BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29770.1
Length=1577
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484732 jgi|Araly1|484732|fgenesh2_kg.5__724__AT3G29770.1 1934 0.0
> Ahg484732 jgi|Araly1|484732|fgenesh2_kg.5__724__AT3G29770.1
Length=1349
Score = 1934 bits (1047), Expect = 0.0
Identities = 1266/1369 (92%), Gaps = 26/1369 (2%)
Strand=Plus/Plus
Query 1 CTTTCTCGCCACCACTTTCACCTGAATTCTCACGTCACTCTTTCTCTCTAAACCACCATA 60
||||||| |||||||||||||||||| || |||||||||| |||||||||| | |||||
Sbjct 1 CTTTCTCTCCACCACTTTCACCTGAA-TCCCACGTCACTC--TCTCTCTAAAACTCCATA 57
Query 61 AAGCTCAAACTTTTTCTCATTCTCTCTCT--AAAGCT-AAAATCTTTTTCACACTCTTCT 117
|||||||||| |||||||||||||||||| ||| || | ||||||||||||||||||||
Sbjct 58 AAGCTCAAACCTTTTCTCATTCTCTCTCTCGAAAACTCACAATCTTTTTCACACTCTTCT 117
Query 118 TCATGTTCAAGCAATGGGAAACCTCTGTTCTTTGTTTACTCCGCCAAAACCCGTGAAGAA 177
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 118 TCATGTTCAAGCAATGGGAAATCTCTGTTCTTTGTTTACTCCGCCAAAACCCGTGAA-AA 176
Query 178 AA-GAAAACCCATCACAAAAAGACAATCTTCTATCGGAGCTTCTTCTTCCGGGTCGGGTC 236
|| |||||||||||||||||||||||||||| || |||| ||||||||||||||||||||
Sbjct 177 AACGAAAACCCATCACAAAAAGACAATCTTCCATTGGAGTTTCTTCTTCCGGGTCGGGTC 236
Query 237 TTAATAGTAACCGTTGGAACAACCGGGTCAGATCATCTTCTTCTAGAAGAGACAACAAGT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TTAATAGTAACCGTTGGAACAACCGGGTCAGATCATCTTCTTCTAGAAGAGACAACAAGT 296
Query 297 TCGAAGATGCTTTGATTCAAGAACATGCTCTTGCTGCTGCTGCTGTTTTGTTCCGACAGC 356
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTGAAGATGCTGTGATTCAAGAACATGCTCTTGCTGCTGCTGCTGTTTTGTTCCGACAGC 356
Query 357 AAAACGGTGGTGGAGGATCGTTGCCGTTTGATCGGTCGGCTTCACAACGTTATCAAGGTT 416
||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 357 AAAACGGCGGTGGA---TCGTTGCCGTTTGATCGGTCGGCTTCGCAACGTTATCAAGGTT 413
Query 417 CTTGTTCGAAGAAGAACCAGTTGCCTCGAAGCTCGAGTTCGAGGTCAAGGTCTTCTACAG 476
|||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |
Sbjct 414 CTTGTTCGAAGAAGAATCAGTTGCCTCGAAGTTCAAGTTCGAGGTCAAGGTCTTCTACGG 473
Query 477 ATCCTCTGTTACAACCTCATCAGTTTCTTAATCAGGGTATAAAGCTAGATGACTTGGAAA 536
|||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |
Sbjct 474 ATCCTCTGTTACAACCTCATCAGTTTCTTAATCAGGGTGTGAAGGTAGATGACTTGGAGA 533
Query 537 CAAACCATTTTGTCCTTGTTCATGGAGGTAGTTTTGGCGCTTGGTGTTGGTATAAAACCA 596
||||||||||||| || | |||||||| ||||||| ||||||||||||||||||||||
Sbjct 534 CAAACCATTTTGTTCTCATCCATGGAGGGGGTTTTGGTGCTTGGTGTTGGTATAAAACCA 593
Query 597 TTGCACTTCTTGAGGAAGATGGTTTTAAAGTTACCGCTATAGACTTAGCAGGTTGCGGTA 656
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 594 TTGCACTTCTTGAGGAAGATGGTTTTAAAGTTACCGCTATAGACTTAGCTGGTTGCGGTA 653
Query 657 TTAACTCGATTAATATAAATGGCATCGCTAGTTTGTCACAATATGTCAAGCCACTTACCG 716
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 654 TTAACTCGATTAATATAAATGGCATTGCTAGTTTGTCACAATATGTGAAGCCACTTACCG 713
Query 717 ATATTCTTGAAAAGCTTCCCATAGGAGAGAAGGTGATATTGGTCGGTCACGATTTTGGTG 776
||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 714 ATATTCTTGAAAAGCTTCCCATAGGAGAGAAGGTGATCTTGGTTGGTCATGATTTTGGTG 773
Query 777 GAGCATGTATATCTTATGCTATGGAACTCTTTCCTTCAAAGATTTCGAAAGCGGTTTTCC 836
|||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct 774 GAGCATGTATATCTTATGCTATGGAAATGTTTCCTTCAAAGATTTCAAAAGCGGTTTTCC 833
Query 837 TCGCTGCAGCGATGTTAACAAATGGTCAAAGTACACTCGATATGTTCTCCTTGAAGGCCG 896
||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||| |
Sbjct 834 TCGCTGCGGCGATGTTGACTAATGGTCAAAGTACACTGGATATGTTCTCCTTGAAGGCAG 893
Query 897 GTCAGAACGATTTAATGAGAAAAGCTCAGATATTTATCTACACAAATGGTAATGAAAACC 956
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 894 GTCAGAACGATTTAATGAGAAAAGCTCAGATTTTTATCTACAAAAATGGTAATGAAAACC 953
Query 957 CTCCAACCGCAATTGACTTAGACAAATCTCTTCTCAAAGACCTTTTGTTCAACCAAAGCC 1016
|||||||||| ||||||||||||||||||||||||| ||||||| ||||||| |||||||
Sbjct 954 CTCCAACCGCCATTGACTTAGACAAATCTCTTCTCAGAGACCTTCTGTTCAATCAAAGCC 1013
Query 1017 CTTCGAAGGACGTTGCATTGGCTTCTGTATCAATGAGGTCAATTCCATTTGCGCCGGTTC 1076
|||| |||||| |||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 1014 CTTCAAAGGACATTGCATTGGCCTCTGTTTCAATGAGGTCAATCCCATTTGCGCCGGTTC 1073
Query 1077 TTGAAAAACTCTCTCTTTCGGATGCTAACTACGGATCAGTTAGACGGTACTATATAGAGA 1136
|||| ||||||||| | || |||||||||||||||||||||||||||||||| |||||||
Sbjct 1074 TTGAGAAACTCTCTATCTCAGATGCTAACTACGGATCAGTTAGACGGTACTACATAGAGA 1133
Query 1137 CGTTAGAAGACAATGCTATACCAGTGACTCTTCAAGAAAACATGATCAATAGTAGTCCTC 1196
|| |||||||||||||||||||| ||||| | |||||||||||||| ||||||||||| |
Sbjct 1134 CGCTAGAAGACAATGCTATACCAATGACTGTCCAAGAAAACATGATTAATAGTAGTCCAC 1193
Query 1197 CTGAAAAGGTTTATCGGTTAAAAGGCGCCGACCATGCTCCTTTCTTTTCCAAACCACAAG 1256
||||||| ||||| |||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 1194 CTGAAAAAGTTTACCGGTTAAAAGGCGCTGACCATGCTCCTTTCTTTTCTAAGCCACAAG 1253
Query 1257 CTTTGCATAAACTTCTGCTTGAGATCGCCAGAATTAGCCCTGCTTAACTCTTTATCATGA 1316
||||||||||||||||||| ||||| |||||||| ||| | || | || | | | | |
Sbjct 1254 CTTTGCATAAACTTCTGCTCGAGATTGCCAGAATCAGC--T-CT-A-CT-TA-A-C-T-A 1303
Query 1317 TATTCACTAACTGGTGTT-TCAAAGTGTCT-CATCAGATCTCTCTTCCT 1363
| | |||||||||||||| | |||||| || ||| ||||||||||||||
Sbjct 1304 T-T-CACTAACTGGTGTTCT-AAAGTGGCTTCATGAGATCTCTCTTCCT 1349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59077969995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5