BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29773.1
Length=3455
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949069 jgi|Araly1|949069|scaffold_800956.1 627 2e-178
Ahg494740 jgi|Araly1|494740|fgenesh2_kg.8__556__AT5G28667.1 363 7e-99
Ahg474030 jgi|Araly1|474030|fgenesh2_kg.1__3984__AT5G28667.1 363 7e-99
Ahg497217 jgi|Araly1|497217|fgenesh2_kg.61__1__AT5G28667.1 357 3e-97
Ahg896143 jgi|Araly1|896143|Al_scaffold_0005_109 313 7e-84
Ahg331170 jgi|Araly1|331170|fgenesh1_pm.C_scaffold_8000513 148 2e-34
Ahg897008 jgi|Araly1|897008|Al_scaffold_0005_974 82.4 2e-14
> Ahg949069 jgi|Araly1|949069|scaffold_800956.1
Length=1823
Score = 627 bits (339), Expect = 2e-178
Identities = 620/754 (82%), Gaps = 26/754 (3%)
Strand=Plus/Plus
Query 2251 TTTTCGTATATGTCAGTTGCG-TGCACGAGGAGT-C-CAATTTCTAAGCTACGAGGAAAT 2307
|||||||||||| || ||||| | ||| ||| || | ||| ||||| || || || |
Sbjct 795 TTTTCGTATATGCCAATTGCGAT-CACAAGGTGTACACAA--TCTAAATTATGAAGAGAG 851
Query 2308 AATTGAGCTGTAGAATTTGGAAAACGAGCAATTTGAAGAGTTAATAATTCAACCAACATT 2367
|||||| | | |||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 852 AATTGAATTATGGAATTTGGAAAATGAGCAATTTGAAGAGTTAATAATTCAACCGTCATT 911
Query 2368 GAGTTACTACAATC-AATATTTTCAAAGAGCACCAATCCAAACAAATGGTGGTTTGGGAT 2426
|||||||||||||| || ||||| |||||| ||||| |||||| |||| || |||||||
Sbjct 912 GAGTTACTACAATCGAA-ATTTTGAAAGAGGGCCAATTCAAACAGATGGCGGGTTGGGAT 970
Query 2427 AGCA-CAATATTTGGTGTCGTCTGCAAGAAGATGA-TGATGCTTGTCTACAATTATTACA 2484
| | ||||||||| |||| | ||||||||| | || ||||||||| || ||| |||
Sbjct 971 -GGAGAAATATTTGGCGTCGAATACAAGAAGAT-AGTGCTGCTTGTCTTCAGTTACTACG 1028
Query 2485 AATGTCTCTTTG-TTGTTTCGGAACATTATGTGAAACACTTCAAATAAATTATGGGTTGC 2543
|||||||| ||| |||||| || |||||||||| | | ||||| |||||| || |
Sbjct 1029 AATGTCTC-TTGATTGTTTTAGATCATTATGTGACGTAATGGAAATACGTTATGGATTAC 1087
Query 2544 AACCAACATCGAATGTAAGCATT-AAAGAGAGTG-TGACAATGTTTCTACGGACATGTGG 2601
|||| |||| |||||| |||||| ||| |||||| || | |||||| |||||| ||||||
Sbjct 1088 AACCTACATTGAATGTTAGCATTGAAA-AGAGTGTTG-CCATGTTTTTACGGATATGTGG 1145
Query 2602 TCACAATGAAGTTCAAAGAGATGTTGGATTGCTATTTGGACAAAATCAAGAGACAGTGAA 2661
|||||||||||||||||||||||||| || | |||||||| || ||||| ||||||||
Sbjct 1146 ACACAATGAAGTTCAAAGAGATGTTGGGTTACGATTTGGACGAACGCAAGAAACAGTGAA 1205
Query 2662 -GGAGAAATTTTTTGAGGTCCTTACAGCGACTGAGTTACTTACTTGTGATTATATCAAGA 2720
| |||||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||
Sbjct 1206 TCG-GAAATTTTTTGAAGTCCTTAGAGCGACAGAGTTACTTGCTTGTGATTATATCAAGA 1264
Query 2721 CTCCAACAAGACAAGAACTATACCGAATTCATGAACAATTGCAA-GTAGCTCGAAGATAT 2779
|||||||||||||||||||| ||||||| | || || | ||| | | ||||||||||
Sbjct 1265 CTCCAACAAGACAAGAACTACGTCGAATTCCTAAAAAACTACAAAGG-GATCGAAGATAT 1323
Query 2780 -GAGCCATATTTTAATGGATTTATTGGAGCAA-ATGATGGAGTTCATGTCTGCGTTAAGG 2837
| ||||||||| | ||||||| ||||||| | | |||||||||||||| || |||||||
Sbjct 1324 TG-GCCATATTTCAGTGGATTTGTTGGAGCTATA-GATGGAGTTCATGTATGTGTTAAGG 1381
Query 2838 TGAAACCCGAGTTACAAGGAATATATTGGGATCGACATGGTAGAACATCATTCAACGTCA 2897
|||| || || |||||||||| |||||| ||||||| | ||||||||| || || |||
Sbjct 1382 TGAAGCCTGAACTACAAGGAATGTATTGGAATCGACACGATAGAACATCGTTTAATATCA 1441
Query 2898 TGGCAATATGTGATTTGAATATGTTGTTCACATATGTTTGGAATTGAGTACCAAGATCTT 2957
|||||||||||||| | ||||||||||| ||||||||||||||| ||| ||| |||| |
Sbjct 1442 TGGCAATATGTGATATAAATATGTTGTTTACATATGTTTGGAATGGAGCACCTGGATCGT 1501
Query 2958 ATCATGATACAGCAGTTCTCACAATCGCACAAGA 2991
||| |||||||||||||| || || ||||||||
Sbjct 1502 GTCACGATACAGCAGTTCTAACGATGGCACAAGA 1535
> Ahg494740 jgi|Araly1|494740|fgenesh2_kg.8__556__AT5G28667.1
Length=954
Score = 363 bits (196), Expect = 7e-99
Identities = 323/384 (84%), Gaps = 9/384 (2%)
Strand=Plus/Plus
Query 2668 ATTTTTTGAGGTCCTTACAGCGACTGAGTTACTTACTTGTGATTATATCAAGACTCCAAC 2727
||||||||| ||||||| ||| || ||||||||||||||||||||||||||||||||||
Sbjct 152 ATTTTTTGAAGTCCTTAGAGCAACAAAGTTACTTACTTGTGATTATATCAAGACTCCAAC 211
Query 2728 AAGACAAGAACTATACCGAATTCATGAACAATTGCAAGTAGCTCGAAGATAT-GAGCCAT 2786
||||||||||||| ||||||| |||| || ||||| | | |||||||||| | |||||
Sbjct 212 AAGACAAGAACTACGTCGAATTCCTGAAAAACTGCAAATGGATCGAAGATATTG-GCCAT 270
Query 2787 ATTTTAATGGATTTATTGGAGCAA-ATGATGGAGTTCATGTCTGCGTTAAGGTGAAACCC 2845
|||||| ||||||| ||||||| | | |||||||||||||| || ||||||||||| ||
Sbjct 271 ATTTTAGTGGATTTGTTGGAGCTATA-GATGGAGTTCATGTATGTGTTAAGGTGAAGCCT 329
Query 2846 G-AGTTACAAGGAATATATTGGGATCGACATGGTAGAACATCATTCAACGTCATGGCAAT 2904
| | |||||||||| |||||| ||||||| | ||||||||| || || ||||||||||
Sbjct 330 GGAACTACAAGGAATGTATTGGAATCGACACGATAGAACATCGTTTAATATCATGGCAAT 389
Query 2905 ATGTGATTTGAATATGTTGTTCACATATGTTTGGAATTGAGTACCAAGATCTTATCATGA 2964
||||||| | ||||||||||| |||||||||||||| ||| ||| |||| | ||| ||
Sbjct 390 ATGTGATATAAATATGTTGTTTACATATGTTTGGAACGGAGCACCTGGATCATGTCACGA 449
Query 2965 TACAGCAGTTCTCACAATCGCACAAGACAGA-GATTCTGAATTTCTTTTGCTTCCAACAG 3023
|||||||||||| || || |||||||| | | ||||||||||||| ||||| ||| | ||
Sbjct 450 TACAGCAGTTCTAACGATGGCACAAGATA-ATGATTCTGAATTTCCTTTGCCTCCGAGAG 508
Query 3024 A-AATATATTATCTAGTTGATTCT 3046
| || |||||| |||||||||||
Sbjct 509 ACAAG-TATTATGTAGTTGATTCT 531
> Ahg474030 jgi|Araly1|474030|fgenesh2_kg.1__3984__AT5G28667.1
Length=976
Score = 363 bits (196), Expect = 7e-99
Identities = 322/383 (84%), Gaps = 8/383 (2%)
Strand=Plus/Plus
Query 2668 ATTTTTTGAGGTCCTTACAGCGACTGAGTTACTTACTTGTGATTATATCAAGACTCCAAC 2727
||||||||| ||||||| |||||| ||||||||| |||||||||||||||||||||||||
Sbjct 152 ATTTTTTGAAGTCCTTAGAGCGACAGAGTTACTTGCTTGTGATTATATCAAGACTCCAAC 211
Query 2728 AAGACAAGAACTATACCGAATTCATGAACAATTGCAAGTAGCTCGAAGATAT-GAGCCAT 2786
||||||||||||| ||||||| |||| || | ||| | | |||||||||| | |||||
Sbjct 212 AAGACAAGAACTACGTCGAATTCCTGAAAAACTACAAATGGATCGAAGATATTG-GCCAT 270
Query 2787 ATTTTAATGGATTTATTGGAGCAA-ATGATGGAGTTCATGTCTGCGTTAAGGTGAAACCC 2845
|||| | ||||||| ||||||| | | |||||||||||||| || |||||||||| ||
Sbjct 271 ATTTCAGTGGATTTGTTGGAGCTATA-GATGGAGTTCATGTATGTATTAAGGTGAAGCCT 329
Query 2846 GAGTTACAAGGAATATATTGGGATCGACATGGTAGAACATCATTCAACGTCATGGCAATA 2905
|| |||||||||| |||||| ||||||| | ||||||||| || || |||||||||||
Sbjct 330 GAACTACAAGGAATGTATTGGAATCGACACGATAGAACATCGTTTAATATCATGGCAATA 389
Query 2906 TGTGATTTGAATATGTTGTTCACATATGTTTGGAATTGAGTACCAAGATCTTATCATGAT 2965
|| ||| | ||||||||||| ||||||||||||||| ||| ||| |||| | ||| |||
Sbjct 390 TGCGATATAAATATGTTGTTTACATATGTTTGGAATGGAGCACCTGGATCGTGTCACGAT 449
Query 2966 ACAGCAGTTCTCACAATCGCACAAGACAGA-GATTCTGAATTTCTTTTGCTTCCAACAGA 3024
||||||||||| || || |||||||| | | ||||||||||||| ||||| ||||| |||
Sbjct 450 ACAGCAGTTCTAACGATGGCACAAGATA-ATGATTCTGAATTTCCTTTGCCTCCAAGAGA 508
Query 3025 -AATATATTATCTAGTTGATTCT 3046
|| |||||| |||||||||||
Sbjct 509 CAAG-TATTATGTAGTTGATTCT 530
Score = 244 bits (132), Expect = 3e-63
Identities = 238/288 (83%), Gaps = 12/288 (4%)
Strand=Plus/Plus
Query 3054 TCTTCACGAAACAGAGTTATTCA-TTATCATATGGCACAATT-TGAAAATGCTCCTCCTC 3111
||||| || ||| ||||| || | ||||| || ||||||| | | |||| ||||||||
Sbjct 570 TCTTCGCGGAACGGAGTTGTT-AGGTATCACATATCACAATTCT-ACAATGGTCCTCCTC 627
Query 3112 CTAGGAATAAGCAGAAACTATTTAATCGATGTCATGCATCTTTACGTTTTATTATTGAGA 3171
|||||||||| ||| | | ||||||||||||||||||||| |||||| | |||||||||
Sbjct 628 CTAGGAATAAACAGGAGTTGTTTAATCGATGTCATGCATCTCTACGTTCTGTTATTGAGA 687
Query 3172 GGTCATTTGGAATTTGGAAGaaaaaaaTGAAGGATTCTTTGTGAA-TTACTAGATAT-AC 3229
|| |||||||| |||||||| |||||||| ||||||||||||||| || | |||||| |
Sbjct 688 GGACATTTGGAGTTTGGAAG-AAAAAATGGAGGATTCTTTGTGAATTTCCCAGATATGA- 745
Query 3230 TACTCTTGTGCAAAAGAGAGTAGTAATGGCTACAATGGGACTACATAATTTTATCATAAT 3289
|| | ||| ||||| ||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct 746 TATTGATGTTCAAAAAAGAGTGGTAACGGCTACAATGGGACTACATAATTTTATCAGAAT 805
Query 3290 TTCAAA--ATTTTCATATAAAGATTTTGGAGAAGTAATGGGAGAAACA 3335
||| || ||||| || | ||||||| |||||||||||||| |||
Sbjct 806 TTCGAATTATTTTGATG-AG-GATTTTGTTGAAGTAATGGGAGATACA 851
> Ahg497217 jgi|Araly1|497217|fgenesh2_kg.61__1__AT5G28667.1
Length=976
Score = 357 bits (193), Expect = 3e-97
Identities = 321/383 (84%), Gaps = 8/383 (2%)
Strand=Plus/Plus
Query 2668 ATTTTTTGAGGTCCTTACAGCGACTGAGTTACTTACTTGTGATTATATCAAGACTCCAAC 2727
||||||||| ||||||| ||| || ||||||||||||||||||||||||||||||||||
Sbjct 152 ATTTTTTGAAGTCCTTAGAGCAACAAAGTTACTTACTTGTGATTATATCAAGACTCCAAC 211
Query 2728 AAGACAAGAACTATACCGAATTCATGAACAATTGCAAGTAGCTCGAAGATAT-GAGCCAT 2786
||||||||||||| ||||||| |||| || ||||| | | |||||||||| | |||||
Sbjct 212 AAGACAAGAACTACGTCGAATTCCTGAAAAACTGCAAATGGATCGAAGATATTG-GCCAT 270
Query 2787 ATTTTAATGGATTTATTGGAGCAA-ATGATGGAGTTCATGTCTGCGTTAAGGTGAAACCC 2845
|||||| ||||||| ||||||| | | |||||||||||||| || ||||||||||| ||
Sbjct 271 ATTTTAGTGGATTTGTTGGAGCTATA-GATGGAGTTCATGTATGTGTTAAGGTGAAGCCT 329
Query 2846 GAGTTACAAGGAATATATTGGGATCGACATGGTAGAACATCATTCAACGTCATGGCAATA 2905
|| |||||||||| |||||| ||||||| | ||||||||| || || |||||||||||
Sbjct 330 GAACTACAAGGAATGTATTGGAATCGACACGATAGAACATCGTTTAATATCATGGCAATA 389
Query 2906 TGTGATTTGAATATGTTGTTCACATATGTTTGGAATTGAGTACCAAGATCTTATCATGAT 2965
|||||| | ||||||||||| |||||||||||||| ||| ||| |||| | ||| |||
Sbjct 390 TGTGATATAAATATGTTGTTTACATATGTTTGGAACGGAGCACCTGGATCATGTCACGAT 449
Query 2966 ACAGCAGTTCTCACAATCGCACAAGACAGA-GATTCTGAATTTCTTTTGCTTCCAACAGA 3024
||||||||||| || || |||||||| | | |||| |||||||| ||||| || | |||
Sbjct 450 ACAGCAGTTCTAACGATGGCACAAGATA-ATGATTATGAATTTCCTTTGCCTCTGAGAGA 508
Query 3025 -AATATATTATCTAGTTGATTCT 3046
|| |||||| |||||||||||
Sbjct 509 CAAG-TATTATGTAGTTGATTCT 530
Score = 193 bits (104), Expect = 9e-48
Identities = 316/415 (76%), Gaps = 27/415 (7%)
Strand=Plus/Plus
Query 3054 TCTTCACGAAACAGAGTTATTCAT-TATCATATGGCACAATT-TGAAAATGCTCCTCCTC 3111
||||| || ||| | ||| || || ||||| ||| |||| || | | |||| ||||||||
Sbjct 570 TCTTCGCGGAACGGGGTTGTT-ATGTATCACATGTCACAGTTCT-ACAATGGTCCTCCTC 627
Query 3112 CTAGGAATAAGC-AGAAACTATTTAATCGATGTCATGCATCTTTACGTTTTATTATTGAG 3170
| || ||||| | || | | ||||||||||| ||||||||| |||||| | |||||||
Sbjct 628 CAAGAAATAAACAAG-AGTTGTTTAATCGATGCCATGCATCTCTACGTTCTGTTATTGAA 686
Query 3171 AGGTCATTTGGAATTTGGAAGaaaaaaaTGAAGGATTCTTTGTGA-ATTACTAGATAT-A 3228
|| |||||||| |||||||| |||||||| |||||||| |||| || | |||||| |
Sbjct 687 AGAACATTTGGAGTTTGGAAG-AAAAAATGGAGGATTCTAAGTGATTTTCCCAGATATGA 745
Query 3229 CTACTCTTGTGCAAAAGAGAGTAGTAATGGCTACAATGGGACTACATAATTTTATCATAA 3288
|| | ||| |||| ||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 746 -TATTGATGTTAAAAAAAGAGTGGTAATGGCTACAATGGGACTACATAATTTTATCAGAA 804
Query 3289 TTTCAAA--ATTTTCATATAAAGATTTTGGAGAAGTAATGGGAGAAACAGAGATTA-CGG 3345
|||| || ||||| | || ||||||| ||||| |||||||| ||| | || | |
Sbjct 805 TTTCGAATTATTTTGACG-AA-GATTTTGTTGAAGTGATGGGAGATACAAATATCAACA- 861
Query 3346 ACACAAATTTTGA-AACTGG-CTTAGG-GAACATCGAAACTGCA-GAG-ATAGTTAATAG 3400
|| ||||| ||| || || || || || ||| || | || | | | ||| | || |
Sbjct 862 ACGTAAATTCTGAGAA-TGATCT-AGATGA-CATGGAGAGTG-ATG-GTATACCTGATGG 916
Query 3401 CGATAAAAAGCCAAATATGAGGGAAAATTATTGTAGATATGTTATGGGAAAATCA 3455
|| | | | ||||||| || |||||| |||| |||||||||||||| ||||||
Sbjct 917 AAATCATATGGCAAATATAAGAGAAAAT-ATTGCAGATATGTTATGGGCAAATCA 970
> Ahg896143 jgi|Araly1|896143|Al_scaffold_0005_109
Length=678
Score = 313 bits (169), Expect = 7e-84
Identities = 216/239 (90%), Gaps = 2/239 (1%)
Strand=Plus/Plus
Query 238 ATGAATAACTACCATTTAAAAGACCCTATACCCCTTGGTAAAGAGTTTTTGGTTGAAAAA 297
|||||||| |||| ||||||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 1 ATGAATAATTACCGTTTAAAAGATCCTACACCCCTTGGTAAAGAGTTTTTGGTTGACAAT 60
Query 298 TTTAATGAGAAGTTCAATCTCAATATAAACTATCGGTTCTTCAAAGAAAAGCTTAACCAG 357
||||| ||||||||||||||||||||||||||||||||||| |||||||||||| | |||
Sbjct 61 TTTAACGAGAAGTTCAATCTCAATATAAACTATCGGTTCTTTAAAGAAAAGCTTGATCAG 120
Query 358 TTGaaaaaa-aaGTACAAGAAGTATGTATAACTCATGGATAACACAGGTATCACGGCTGA 416
|| |||||| |||||||| ||||||||| | |||||| |||||||||| ||||||| |||
Sbjct 121 TT-AAAAAAGAAGTACAAAAAGTATGTACAGCTCATGAATAACACAGGCATCACGGTTGA 179
Query 417 TCTTGTCACACATCAGATAACTGCTAGTAATTCATGGTGGAAAGAGCAAGAAGTAAGTA 475
|| |||||||||||||||||| || |||||||||||||||||||| ||||||||| |||
Sbjct 180 TCCTGTCACACATCAGATAACAGCAAGTAATTCATGGTGGAAAGATCAAGAAGTATGTA 238
> Ahg331170 jgi|Araly1|331170|fgenesh1_pm.C_scaffold_8000513
Length=807
Score = 148 bits (80), Expect = 2e-34
Identities = 171/211 (81%), Gaps = 22/211 (10%)
Strand=Plus/Plus
Query 1305 CGCTTAAACACGGGTCATCATTTTGGGACTCCAAGTTCTGCTTGTTTTCCTTATGGCAGT 1364
|||||||||||||| ||||||| || || ||||||||||||||||||||||||||||| |
Sbjct 506 CGCTTAAACACGGG-CATCATTATGAGAGTCCAAGTTCTGCTTGTTTTCCTTATGGCAAT 564
Query 1365 TCAATGTCTGGTGGTTTTCCTTACAAGAGTCCTTATTGTGATGGTAATTCATGGGGTACA 1424
||||| ||||||||||||||||| || | | ||| | | | ||||||| ||
Sbjct 565 CCAATGCCTGGTGGTTTTCCTTAC--GA--C---A--GTG--G-TCA---ATGGGGTGCA 609
Query 1425 CCACCAAATGCTCCAC-A-ATGGGGTACTCCACCAAGTGCACCACAATGGGGTA-ATCTT 1481
|| ||||||||||||| | |||||| ||||||||| ||| |||||||||| || | |
Sbjct 610 CCGCCAAATGCTCCACGATATGGGG--CTCCACCAAATGCTCCACAATGGGTTACACCAC 667
Query 1482 TCAAATGGACCACAATGGAGTTCATAACCAA 1512
||||||| |||||||||| ||||| |||||
Sbjct 668 -CAAATGGGCCACAATGGATTTCATCACCAA 697
> Ahg897008 jgi|Araly1|897008|Al_scaffold_0005_974
Length=1116
Score = 82.4 bits (44), Expect = 2e-14
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 1412 TTCATGGGGTACACCACCAAATGCTCCACAATGGGGTACTCCACCAAGTGCACCACAATG 1471
||| |||||||||||||||||||||||||||||||| || ||||||| ||| || || ||
Sbjct 798 TTCTTGGGGTACACCACCAAATGCTCCACAATGGGGAACACCACCAAATGCTCCTCAGTG 857
Query 1472 GGGTA 1476
|||||
Sbjct 858 GGGTA 862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130461360244
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5