BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G29780.1

Length=449
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936820 jgi|Araly1|936820|scaffold_501011.1                        435    2e-121


> Ahg936820 jgi|Araly1|936820|scaffold_501011.1
Length=396

 Score =  435 bits (235),  Expect = 2e-121
 Identities = 322/363 (89%), Gaps = 9/363 (2%)
 Strand=Plus/Plus

Query  1    ATGACCAAAACATTTttctcct-tctccttcttcttcaccag-ctctcttctccttctcc  58
            ||| ||||| ||||||||| || ||||||||||||||||| | |||||||||| ||||||
Sbjct  24   ATGGCCAAATCATTTTTCT-CTGTCTCCTTCTTCTTCACC-GTCTCTCTTCTCTTTCTCC  81

Query  59   tcGCGGCAACTTCCGCAACCGCATCTACAGGGAATGTTACTAGTGGGTTGAGATATGACG  118
            || ||||  |||| |||||||||| | ||| ||| |||||||||| |||||||||||| |
Sbjct  82   TCACGGCGGCTTCAGCAACCGCATTTGCAGAGAACGTTACTAGTGAGTTGAGATATGATG  141

Query  119  GATGTGCTCCTGGAGACACCGTTGGAGAATGTATAACCGCAACGGTTGAGGAGGAGGATG  178
            ||||| ||||||||||||||||||||||||| ||||||||  |||||   ||||| ||||
Sbjct  142  GATGTTCTCCTGGAGACACCGTTGGAGAATGCATAACCGCGGCGGTT---GAGGATGATG  198

Query  179  AGGAAGGAGTTGAGGCGGTAGTCCGGCGGATTCTACAACAAAGAAA-GTACTTAAGCTAC  237
            | ||||||||||||||| | || ||||||||||| ||||||| ||| ||| |||||||||
Sbjct  199  ATGAAGGAGTTGAGGCGTTGGTGCGGCGGATTCTTCAACAAA-AAAGGTATTTAAGCTAC  257

Query  238  AAAACTTTGCAGAAGCAGCCAACTTGTGATGGTAGAATTGCTGGTAATTGCATAGGGACT  297
            |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||
Sbjct  258  AAAACTTTGCAGAAGCAGCCGACTTGTGATGGAAGAATTGCCGGTAATTGCATAGGAACT  317

Query  298  GTTAATCCAAAAGGTGCAACTTGTACTTACTACCAGAGATGCAAACGTGCCGCATAGTTA  357
            ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| 
Sbjct  318  GTTAATCCAAAAGGTTCAACTTGTACTTACTACCAAAGATGCAAACGTGCCGCCTAGTTG  377

Query  358  TTT  360
            |||
Sbjct  378  TTT  380



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16216125325


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5