BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29782.1
Length=4131
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480322 jgi|Araly1|480322|fgenesh2_kg.3__3023__AT2G04470.1 2538 0.0
> Ahg480322 jgi|Araly1|480322|fgenesh2_kg.3__3023__AT2G04470.1
Length=2037
Score = 2538 bits (1374), Expect = 0.0
Identities = 1860/2087 (89%), Gaps = 64/2087 (3%)
Strand=Plus/Plus
Query 2057 GGGAAGCTTTTCTTACCACTAACTACATCCTTAATAGGATACCACATAAGGTGACTGCAA 2116
|||||||||| ||||||| ||| |||||||| || | ||||| ||||||||||||| |
Sbjct 3 GGGAAGCTTTGCTTACCAATAATTACATCCTCAACATAATACCGCATAAGGTGACTGGTA 62
Query 2117 AGTCACCATATGAACTTTGGAAAGGTACAGTACCCTCGTACAAATACCTAAAAGTGT-GG 2175
|||||||| |||||||||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct 63 AGTCACCACATGAACTTTGGAAAGGTACAGTACATTCGTACAAATACCTGAAAGTGTGGG 122
Query 2176 GGTGTCTAGCAAAAGTGGCTGTACCACCTCCCAAAAAGGTCACAATTGGGCCTAAGATTG 2235
|||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 123 GGTGCCTAGCAAAAGTGGCTGTACCACCTCCTAAAAAAGTCACAATTGGTCCTAAGACCA 182
Query 2236 TAGACTGTATCTTCATCGGATATGCGCACAACAGCAATGCTTAT-AGATTTCTTGTTT-A 2293
|||||||||||||||||||||||||||| || || | ||||||| | |||| ||| || |
Sbjct 183 TAGACTGTATCTTCATCGGATATGCGCATAATAGTAGTGCTTATCA-ATTT-TTGGTTCA 240
Query 2294 TAAATCGGATATTCCAGATATCCATGAAAATACAGTCATGGAATCAAGAAATGCATCGTT 2353
||||| ||||||||||||||| | | ||||||| | |||||||||||||||||||| ||
Sbjct 241 CAAATCAGATATTCCAGATATC-A-GTAAATACATTTATGGAATCAAGAAATGCATCATT 298
Query 2354 TTTTGAAGATATTTTTCCTTGTAGGAAAACTCAAAAACGAACTCGTGATCAACGAGTTGC 2413
||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||| |||
Sbjct 299 TTTTGAAGACATTTTCCCTTGTAGGAAAGCTCAAAAACGAACTCGTGAACAACGAGATGC 358
Query 2414 AGCAA-CATCGGAAGCTGAGGACAATTCTTTGGGTACTATTACTGTTGAAGAAACAGAAC 2472
||||| | || ||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 359 AGCAATC-TCAGAAGCTGAGGACAATACTTCGGGTACTATTACTGTTGAAGAAACAGAAC 417
Query 2473 AGGAACCTGAAGATCAACCTAGGCGGAGCAAAAGAGCTCGAAAAGAGAAATCTTTCGGTG 2532
|| |||| | | || |||| ||| ||| ||||||||||
Sbjct 418 C--AA----AAGAGC----T---CG---CAAA-GAG----AAA-------TCTTTCGGTG 449
Query 2533 ATGATTTCTTGATGGCGTTTTTAGCTGGAAACGTACCAAGAACTTATTCAGAAGCCATGT 2592
|||| ||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||
Sbjct 450 ATGACTTCTTGATGGCGTTTCTAGCTGAAAACGTACCAAGAACTTATTCAGAAGCTATGT 509
Query 2593 CTTCCCCCGATGCACCTTATTGGAAGGAAGCAGTCAATACTGAAATAGACTCTATCTTGC 2652
|| | || |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 510 CTACACCTGATGCACCTTATTGGAAGGAAGTAGTCAATACTGAAATAGACTCTATCTTGC 569
Query 2653 AACATCATACTTACGAGATAGCAAATCTACCCCAAAGTTCTAAACCATTGGGGAGTAAAT 2712
||||||||||||||||||||||| ||||||||||| | |||||||||||||| |||||||
Sbjct 570 AACATCATACTTACGAGATAGCAGATCTACCCCAAGGCTCTAAACCATTGGGAAGTAAAT 629
Query 2713 GGATTTTCACTATTAAAA-GGAAAACAAATGGTGATATTGATAGGTACAAGGCTAGGCTT 2771
||||||||| || || || ||||||| |||||||||||||||||||||||||||||||||
Sbjct 630 GGATTTTCA-TAATATAACGGAAAACCAATGGTGATATTGATAGGTACAAGGCTAGGCTT 688
Query 2772 GTGGTACAAGGATTTTGACAAAAAGAAGGTTTAGATTTCTTTGATACCTATTCTCCTGTA 2831
||||| ||||||||| ||||||||||| | || ||||| |||||||||||||||| ||||
Sbjct 689 GTGGTGCAAGGATTTCGACAAAAAGAATGCTTGGATTTTTTTGATACCTATTCTCTTGTA 748
Query 2832 ACGAAAATAACTTCAATCAGGATGCTCATAGGCTTTGCAGCCTTAAGAGATCTTGAAATA 2891
|||| |||||||||||||||||||||||||||| |||| |||||| |||||||||||||
Sbjct 749 ACGAGAATAACTTCAATCAGGATGCTCATAGGCATTGCTGCCTTACGAGATCTTGAAATC 808
Query 2892 CATCAAATGGATGTAAAAACAGC-TTTCTTACATGGAGATTTGGATGAGGAAATCTACAT 2950
|||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||
Sbjct 809 CATCAAATGGATGTAAAAACTGCCTTTCTC-CATGGAGATTTGGAAGAGGAAATCTACAT 867
Query 2951 GAAACAACCTGAAGGGTTTGTTATCCCAGGACAAGAACACAAAGTGTGTAAACTTGTGAA 3010
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 868 GAAACAACCTGAAGGGTTTGTTATCCTAGGACAAGAACACAAAGTGTGTAAACTTGTGAA 927
Query 3011 GTCACTATACGGACTCAAACAGGCTCCTAAGCAGTGGCATGAGAAGTTTGACAGTGTTAT 3070
|||| |||| ||||||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 928 GTCATTATATGGACTCAAACAGGCTCCTAAGCAGTGGCATGAGAAGTTTGATAATGTGAT 987
Query 3071 GATGTCTAATGATTTTACCATTAATGAATGTGATAAATGCATATATTTCAAAATTACTCC 3130
||||||||||| |||| ||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 988 GATGTCTAATGGCTTTAGCATTAATCAATGTGACAAATGCATATATTTCAAAATTACTCC 1047
Query 3131 AAAAGGGTACATTTTGTTATGTTTATATGTAGACGATATGCTCATCTTGGGGAGTAACAC 3190
|| |||||||||||||||||||||||||| | | | || |||||||| || |
Sbjct 1048 AACAGGGTACATTTTGTTATGTTTATATG----C--T---C--ATTTTGGGGAGCAATAA 1096
Query 3191 AGATATCATAAATCAATCTAAAAA-CATGCTCAAAAGATATTTTGAAATGAAAAA-TATG 3248
||| |||||||||||| | |||| ||||||||||||||||||||| |||||| | | ||
Sbjct 1097 AGACATCATAAATCAAA-TGAAAAGCATGCTCAAAAGATATTTTGACATGAAAGACT-TG 1154
Query 3249 GGTCTAGCAGATGTTATTCTGGGTATAAAAATCATCAGAACTGATGAAGGCATTATCTTG 3308
|||||| ||||||| ||| |||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1155 GGTCTACCAGATGTCATTTTGGGTATAAAAATCATCAGAACTGATGAGGGCCTTATCTTG 1214
Query 3309 TCTCAAACCCACTATGATGAGAAGATACTCGATCGTTTCAAGCATTACTCTAATGGGACT 3368
||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1215 TCTCAAACCCACTATCCTGAGAAGATACTTGATCGTTTCAAGCATTACTCAAATGGGACT 1274
Query 3369 GCAAAAAA-TCCAGTTGATCCTCAACTTCACTTGACTAAAAACTCTGGTGAACCTGTGCA 3427
| |||||| |||||| ||||||||| |||||||||| ||||| || ||||||||||||||
Sbjct 1275 G-AAAAAACTCCAGTAGATCCTCAAATTCACTTGACCAAAAATTCAGGTGAACCTGTGCA 1333
Query 3428 ACAGGTAAAATATGCAAGAGTAGTTGGCAGTTTAATGTACTTGACAAACAGTACAAGACC 3487
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1334 ACAGGTGGAATATGCAAGAGTAATTGGCAGTTTAATGTACTTGACAAACAGTACAAGACC 1393
Query 3488 GGATTTAGTGCACTCTGTAAATGTACTTAGTCGCTACACAAGCAATCAAGGATATAATCA 3547
|||||||| ||||||||||||||||||||||||||||||||| |||| |||| |||| ||
Sbjct 1394 GGATTTAGCGCACTCTGTAAATGTACTTAGTCGCTACACAAGTAATCCAGGACATAAGCA 1453
Query 3548 TTGCAAGGCTATAACTAGAGTTATGAACTA-CGTATGTTATACCAAAGATCATGGCTTGC 3606
||| |||||||||||||||||| ||||||| | || ||||||||||||||||||||||||
Sbjct 1454 TTGGAAGGCTATAACTAGAGTTTTGAACTATC-TACGTTATACCAAAGATCATGGCTTGC 1512
Query 3607 ACTATGGTAAAGAACCTGCGGTTTTGGAAGGTTACAGTGATGCCAACTGAATAGCAGATT 3666
|||||||||||||||| || |||| |||||||||||||||||||| || || ||||| |
Sbjct 1513 ACTATGGTAAAGAACCCGCAATTTTAGAAGGTTACAGTGATGCCAATTGGATCGCAGACT 1572
Query 3667 CCAAAAACTCTAAATCCACTAGTGGATACATCTTTACACTTGGAAGTCCAGCAGTATCCT 3726
|||| ||||| |||||||| |||||||||||||||||||||||| || || |||| || |
Sbjct 1573 CCAAGAACTCAAAATCCACAAGTGGATACATCTTTACACTTGGAGGTGCATCAGTGTCTT 1632
Query 3727 GGAAATCTAGCAAACAAACTGTGGCAGCCAAATCAACTATGGAATCGGAATTCATAGCAT 3786
|||||||| | |||||||||||||| |||||||||||||||||||| |||||||| || |
Sbjct 1633 GGAAATCTTGTAAACAAACTGTGGCGGCCAAATCAACTATGGAATCTGAATTCATTGCGT 1692
Query 3787 TGGATACAACTGCAGCGGAAGCCGAATGGCTTCGTAATTTCTTGGAAGACATTCCAATGT 3846
|||||||| |||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 1693 TGGATACAGCTGCAGCGGAAGCCGAATGGCTCCGTAATTTCTTGGAAGATATCCCAATGT 1752
Query 3847 GGGGGATACCTGTGCCTGCAATACGTGTACACTGTGATAGCCAATCAGT-TATAGGCAGG 3905
|||||| || |||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1753 GGGGGAAACATGTGCCTGCAATACGTGTACACTGTGATAGCCAATC-GTCTATAGGCAGG 1811
Query 3906 GCACAAAGTACCCTATATAATGGTAAATCTCGTCACATCAGACGTTGACATAAAACCATT 3965
|||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1812 GCACGAAGTACCCTATATAATGGTAAATCTCGTCACATAAGACGACGACATAAAACCATT 1871
Query 3966 CGACAACTTATCTTAACTAAAGTAATCACGATCGATTACATCAAATCAGTTGACAACCTA 4025
|||||||||||| ||||| |||||||||||| |||||||||| |||| |||||||||
Sbjct 1872 AGACAACTTATCTCAACTAGAGTAATCACGATTGATTACATCAGGTCAGCAGACAACCTA 1931
Query 4026 GCGGATCCATTTACAAAAGGTTTGA-ATCGAGATCAAGTTGCAAGATCATCAAGAGGAAT 4084
||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||
Sbjct 1932 GCGGATCCATTTACAAAAGGTTTGACA-CGAGATCAAGTTGCGAGATCATCAAGAGGAAT 1990
Query 4085 GGGTTTAAAGCCTACCACCTAAGAGGAAGTTTGATGGTAACCCCACC 4131
|||||||||||||| || |||||||| |||||||||||||||||||
Sbjct 1991 GGGTTTAAAGCCTATGACTTAAGAGGAGGTTTGATGGTAACCCCACC 2037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 156188279592
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5