BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29810.1
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484733 jgi|Araly1|484733|fgenesh2_kg.5__725__AT3G29810.1 2141 0.0
> Ahg484733 jgi|Araly1|484733|fgenesh2_kg.5__725__AT3G29810.1
Length=1447
Score = 2141 bits (1159), Expect = 0.0
Identities = 1328/1409 (94%), Gaps = 14/1409 (1%)
Strand=Plus/Plus
Query 27 CACATCTTCGAGAAGTTTCCGCCGGCGGGAGAGATCAAAGACAACTGCTGATCAGAAATC 86
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 CACATCTTCGAGAAGTTTCCGCCGGCGGGAGAGATCAAAGACAACTGTTGATCAGAAATC 60
Query 87 AGAGATCAGAGATATGAACATTCTCTTCTCCAGATTCTCCTTTTTGCTTCTGTTTCTCTG 146
||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 61 AGATATCAGAGATATGAACATTCTCTTCTCTAGATTCTCCATTTTGCTTCTGTTTCTCTG 120
Query 147 TTCTTGGACCAGTTTCACTTTCACCACAACAGAAGCTTATGATGCACTTGATCCATA-TG 205
|||||||||||| ||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 121 TTCTTGGACCAG------TTTCACCACAACAGAGGCTTATGATGCACTTGATCCA-ACTG 173
Query 206 GAAACATTACTATAAAATGGGATATTATGAGCTGGACTGGTGATGGTTATGTGGCTGTTG 265
|||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||
Sbjct 174 GAAACATTACTATAAAATGGGATATTATAAGCTGGACTCCTGATGGTTATTTGGCTGTTG 233
Query 266 TAACAATCTTTAATTTCCAACAATACCGTCACATTGAGGCGCCGGGGTGGCAATTAGGAT 325
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 234 TAACAATCTTTAATTTCCAACAATACCGTCATATTGAGGCGCCCGGGTGGCAATTAGGAT 293
Query 326 GGAGTTGGATGAAGAAGGAAGTAATTTGGAGTATGGTTGGTGGTCAAGCAACAGAACAAG 385
|||||||| ||||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 294 GGAGTTGGTTGAAGAAGGAAGTGATATGGAGTATGGTTGGTGGGCAAGCAACAGAACAAG 353
Query 386 GAGATTGTTCTAAGTTTAAGGGTAACATTCCTCATTGCTGCAAGAAAACTCCGGCTATCG 445
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 354 GAGATTGTTCTAAGTTTAAGGGTAACATTCCTCATTGCTGCAAGAAAACCCCGGCCATCG 413
Query 446 TTGATTTGTTACCGGGAACTCCTTATAACCAACAGATATCAAACTGTTGTAGAGGCGGTG 505
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 414 TTGATTTGTTACCGGGAACTCCTTATAACCAACAGATATCCAACTGTTGTAGAGGCGGTG 473
Query 506 TGATTAGCGCGTGGGCGCAAGACCCCGCAACCGCGATTTCTTCGTTTCAGATTAGTGTTG 565
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 474 TGATTAGCGCGTGGGCACAAGACCCTGCAACTGCGATTTCTTCGTTTCAGATTAGTGTTG 533
Query 566 GCCAGTCTGGAACAACTAATACTACGGTTAGAGCACCTAGGAATATAACTTTGAAGGCTC 625
| || |||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 534 GTCAATCTGGAACAACTAATACTACGGTTAGAGCACCTAGGAACATCACTTTGAAGGCGC 593
Query 626 CAGGACCTGGTTACACTTGCGGGCCTGCAAAACTCGTTAAGCCGAGTAGATTCATTTCCG 685
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
Sbjct 594 CAGGACCTGGTTACACTTGCGGGCCTGCAAAACTCGTTAAGCCTAGTAAATTCATTTCTG 653
Query 686 CGGATAAACGAAGAAAGACTCAGTCTTTGCTTACATGGAACATTACTTGCACATATTCGC 745
| ||| ||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||
Sbjct 654 CAGATGAACGAAGAAAGACTCAGTCCTTGCTGACATGGAACATTACGTGCACGTATTCGC 713
Query 746 AGTTTCTAGCACGGAAAACTCCGACTTGTTGTGTCTCACTCTCAGCCTTCTACAATGAAA 805
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 714 AGTTTCTAGCACGGAAAACTCCGACTTGTTGTGTCTCACTCTCATCCTTCTACAATGAAA 773
Query 806 CTATAGTACCATGTCCAACTTGTTCTTGTGGATGTCAAAATAGTTCTCAAGCTGGTACAT 865
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CTATAATACCATGCCCAACTTGTTCTTGTGGATGTCAAAATAGTTCTCAAGCTGGTACAT 833
Query 866 GTGTTGACCCTAAAATAGCTTCAGTAGTACCAGCCTTAGGG-AAGAACAACCTCGAACCT 924
|||||||||| ||||||||||| || |||||||| || ||| ||||||||||| |||||
Sbjct 834 GTGTTGACCCGAAAATAGCTTCGGTTGTACCAGC-TTCGGGGAAGAACAACCTTGAACCG 892
Query 925 CTCTTGCAATGTACGCAACATATGTGTCCCATTCGAGTTCATTGGCATGTAAAAACTAGC 984
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 893 CTCTTGCAATGTACGCAACATATGTGTCCCATCCGAGTTCATTGGCATGTAAAAACTAAC 952
Query 985 TACAAAGAGTACTGGAGAGTGAAGGTTGCCATCACAAACTTTAACTACAATATGAACTAC 1044
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 953 TACAAAGAGTACTGGAGAGTGAAGGTCGCAATCACAAACTTTAACTACAATATGAACTAC 1012
Query 1045 TCTCAGTGGAACTTAGTCGTTCAGCATCCCAACTTCGACAATCTCACTAAGCTTTTCAG- 1103
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1013 TCGCAGTGGAACTTAGTCGTTCAGCATCCCAACTTCGACAATCTCACTCAGCTTTTCAGC 1072
Query 1104 TTTCAACTACAAACCGCTTAATCCTTACTTGAACATAAATGACACGGCCATGCTATGGGG 1163
||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1073 TTT-AACTACAAACCGCTTAATCCTTACGCAAACATAAATGATACGGCCATGCTATGGGG 1131
Query 1164 AATCAAGTTCTACAATGATTTTTTAAGCCAAGCTGGTCCAGTAGGCAATGTACAGTCAGA 1223
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1132 AATCAAGTTCTACAATGATTTTTTGAGCCAAGCTGGTCCAGTAGGCAATGTACAATCAGA 1191
Query 1224 GCTTCTCTTCCAAAAGAACCCATTGGAGTTCACATTCGAGAAAGGATGGGCGTTTCCGAG 1283
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1192 GCTTCTCTTCCAAAAGAACCCGTCGGAGTTCACATTCGAGAAAGGATGGGCGTTTCCGAG 1251
Query 1284 GCGCATATACTTCAACGGTGATAACTGCGTTATGCCACCTCCAGACTCTTATCCATGGCT 1343
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 GCGCATTTACTTCAACGGTGATAACTGCGTTATGCCACCTCCAGACTCTTATCCATGGCT 1311
Query 1344 TCCAAACGCTAGTCCAAAC-ATTGCAACCTCGCCATTTGTCATACTTCTCATCACTTTCT 1402
||| ||||||| ||||||| || ||| ||||||||||||| |||||||||||||||||||
Sbjct 1312 TCCGAACGCTACTCCAAACCAT-GCAGCCTCGCCATTTGTTATACTTCTCATCACTTTCT 1370
Query 1403 TATCTGTTTTGATTCTTATGTAAATGGAT 1431
| | |||||| ||||||||||||| ||||
Sbjct 1371 TTTTTGTTTTAATTCTTATGTAAAGGGAT 1399
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56373562600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5