BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G29830.1 Length=1395 Score E Sequences producing significant alignments: (Bits) Value Ahg323041 jgi|Araly1|323041|fgenesh1_pm.C_scaffold_5000585 1567 0.0 > Ahg323041 jgi|Araly1|323041|fgenesh1_pm.C_scaffold_5000585 Length=1407 Score = 1567 bits (848), Expect = 0.0 Identities = 1222/1401 (87%), Gaps = 31/1401 (2%) Strand=Plus/Plus Query 1 ATGGATTCAGTCAACCAACGAGACAGAATATCAAGTCTACCAGATGTAGTTCTAGTTATG 60 ||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1 ATGGATTCAATTTACCAACGAGACAGAATATCAAGTCTACCAGATGTAGTTCTGGTTATG 60 Query 61 ATCCTCTCTTTCTTGTCCTTCAAGGATAATGTAAAGACGAGCATTCTCTCAAAGCGTTGG 120 |||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||| Sbjct 61 ATCCTCTCTTTCTTGTCCTTCAAGGATAATGTAAAGACGAGCGCTCTCTCGAAGCGCTGG 120 Query 121 AGGAATATTTGCTATGAAGCAAAGAACATTTCCTTTAAGGAATCAGAGTATGTGGAC-AT 179 ||||| | || |||||| ||| ||||||||||||||||||||| |||||||||||| | Sbjct 121 AGGAACCTCTGTTATGAAACAAGGAACATTTCCTTTAAGGAATCCGAGTATGTGGACCA- 179 Query 180 CTCTGTGTTTGACTATGTCTCCAAACGGGTATCATTTGTTCGGTATATGCTCAACTGGGT 239 || ||| | |||||| |||| ||| |||| ||||||||||| ||||||||||||||||| Sbjct 180 CTATGTCTCCGACTATATCTCTAAAAGGGTGTCATTTGTTCGCTATATGCTCAACTGGGT 239 Query 240 CTCTAGAGTTCCCATTAAGGTTATCGAAAGTTTTGAAATTTGTCTCGGTTTTCCGGTGGG 299 |||||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||| Sbjct 240 CTCTAGAGTTCCCATTCAGGTTATCGAAAGTTTTGAAATTTGTCTCTCTAATCCAGTGGG 299 Query 300 CTTCGAGGTAGAGATCAAGTCATTGATTGAGTTTTCCATCTCTAGACAAGTAAAGAAGTT 359 |||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||| || Sbjct 300 CTTCGAGGCAGATATCAAGTCTTTGATTGAGTTTTCCATCTCTAGACAAGTGAAGAACTT 359 Query 360 AGTTCTTGATTTCTCAAGCCCTTTTTGG-GATAACACATGGGATGGGTTGAGAAATGATG 418 |||||||||||||||||||||||||||| | | |||||||||||||||||||| |||||| Sbjct 360 AGTTCTTGATTTCTCAAGCCCTTTTTGGAG-TCACACATGGGATGGGTTGAGATATGATG 418 Query 419 ACTTTGTTATTGAATTGCCCGCACTCATTTACGGTCTACAAACCCTCGAATCATTGACGA 478 |||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| || Sbjct 419 ACTTTGTTATTGTCTTGCCTGCACTCATTTACGGTCTACAAACCCTTGAATCATTGAAGA 478 Query 479 TTTACGCATGCATGTTTGACCCTTCGA-GATTCACAAACGTAGGACTAAGAACGCTCTCT 537 |||| || ||| |||||||||| |||| | ||| ||||| |||||||||||| ||||||| Sbjct 479 TTTATGCTTGCTTGTTTGACCCCTCGAAG-TTCGCAAACTTAGGACTAAGAAAGCTCTCT 537 Query 538 ATTGGTTGGTTTAGACTTGAAAAGATCGAATCTTTGTTATCAAAGTTTCCTTTGCTTGAG 597 ||||||||||| |||||| ||||||||||||||||| |||||||||| |||||||||||| Sbjct 538 ATTGGTTGGTTCAGACTTAAAAAGATCGAATCTTTGCTATCAAAGTTCCCTTTGCTTGAG 597 Query 598 AGTCTGAGTATTATCTCTTGTTACCTTGATGAGGTTAAGTTAGCTGGGCAAATTAGAGTC 657 ||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 598 AGTCTGAGTATAATCTCTTGTTACCTTGATGAGATTATGTTAGCTGGGCAAATTAGAG-- 655 Query 658 AGAGAACTGATCATCGATAACTGCATTATCCCT-ACCATGTATTGTTTGTTAAACCTACC 716 | | |||||||| || ||||||||||||||| || |||| || || ||| |||||||| Sbjct 656 A-A---CTGATCATTGAGAACTGCATTATCCCTTAC-ATGTCTTATTCGTTTAACCTACC 710 Query 717 TAACATAGAAATCTTCAAGTACTCCGGAAATGTCATCGTCTTCGATTTT-CAGAAAGTGA 775 |||||||||||||||||||||||| || || | ||| |||| |||||| | ||||||| Sbjct 711 TAACATAGAAATCTTCAAGTACTCAGGCGATCTTATCTTCTTTGATTTTGC-GAAAGTGG 769 Query 776 ATATGATATTGTTGAAAGAGGTTTACTTAGAtttttttATAGAGCATGAA-AATGACGAA 834 |||||||||| ||||||| || |||||||| ||| | ||||| || || ||||| ||| Sbjct 770 ATATGATATTACTGAAAGAAGTGTACTTAGAATTTGGTGTAGAGTAT-AATAATGATGAA 828 Query 835 CCAACCTATTCA-CCTAAAGAAGCTGGAGATATTCTTTCCCATCTTCTTAATGATCTTCG 893 |||| || |||| || || ||||| ||| |||| ||||| ||||| |||||||||||||| Sbjct 829 CCAAGCTTTTCAACCGAA-GAAGCCGGAAATATGCTTTCTCATCTGCTTAATGATCTTCG 887 Query 894 ATCTTCTAGGACTTTGACCGTCTGCTCTTATCTCCTTGAGGTGATTTCAGAATGTAACGA 953 | |||||||||| || | ||||||||||||||||||||||||||| ||||||||||||| Sbjct 888 ACCTTCTAGGACCTTAATTGTCTGCTCTTATCTCCTTGAGGTGATTCCAGAATGTAACGA 947 Query 954 TCCGGTTGATATGCTTCGTGATGTCCAAGCACAACATTTGGTGCTAGAAACCC-TCATGC 1012 |||||||||||||||| |||| || || |||||||||||||||||||||| | | ||| Sbjct 948 TCCGGTTGATATGCTTTGTGACCTCAAAACACAACATTTGGTGCTAGAAACGCATT-TGC 1006 Query 1013 ATCCGAACGAGTTTACGGGTATGAGGCTCCTTCTTGATCATTGCCCGAACTTAGAGACCC 1072 |||||| ||||||| ||| || | ||||||||||||||||||||||||||||||||| | Sbjct 1007 ATCCGATGGAGTTTAGGGGAATCAAGCTCCTTCTTGATCATTGCCCGAACTTAGAGACTC 1066 Query 1073 TCACGTTCCAGCTTCTTTGTCTAAAACCTTTCCCTATGGCTTCACATGGTGGC-TCCAGT 1131 | || ||| || |||||| | || ||||||||||||||||||| |||| ||| | ||| Sbjct 1067 TTACTTTCAAGATTCTTTCACCAAGACCTTTCCCTATGGCTTCAAATGGCGGCATA-AGT 1125 Query 1132 TCACATACATTATGGCTGGAAAACATCTCATCAAGGTGTTTGAGAAGGACTCTCAAGATC 1191 ||||| | ||| ||||||||||| |||||||| ||||||||||||||||||||||||| | Sbjct 1126 TCACAGATATTTTGGCTGGAAAATATCTCATCCAGGTGTTTGAGAAGGACTCTCAAGACC 1185 Query 1192 CTTGTGGTTAGGGGTTTTTGTAATAGCTGGAACGAGTTCTATTTATTGAACTATTTGGTT 1251 || ||||| | ||||| ||||| ||| ||||||||||| ||||| ||||||||||| ||| Sbjct 1186 CTAGTGGTCAAGGGTTATTGTAGTAGTTGGAACGAGTTTTATTTGTTGAACTATTTTGTT 1245 Query 1252 CTGCCGGAGCATGGGTTTGCATTGGAAAGAGTTGAACTTTACTTGCCTCC--G-TTGCAA 1308 | ||||| |||||||| ||||||||||||||||||||| ||| |||| | | ||| || Sbjct 1246 CAGCCGGCGCATGGGTATGCATTGGAAAGAGTTGAACTCTACATGCCGACTTGGTTGAAA 1305 Query 1309 GAAA-TGCCAAGGCAGTGGGC-CTATCATGGAGCCGCGATGTTACAAAAAACTTCAAATC 1366 |||| || |||||||||||| | || |||| ||||||||||| |||| |||||||||| Sbjct 1306 GAAACTGA-AAGGCAGTGGGCAC-ATTATGGTGCCGCGATGTTGCAAAGCACTTCAAATC 1363 Query 1367 GAGTACAAGTTATTTTGCACA 1387 ||||||||||||||||||||| Sbjct 1364 GAGTACAAGTTATTTTGCACA 1384 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52145545405 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5