BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29830.1
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323041 jgi|Araly1|323041|fgenesh1_pm.C_scaffold_5000585 1567 0.0
> Ahg323041 jgi|Araly1|323041|fgenesh1_pm.C_scaffold_5000585
Length=1407
Score = 1567 bits (848), Expect = 0.0
Identities = 1222/1401 (87%), Gaps = 31/1401 (2%)
Strand=Plus/Plus
Query 1 ATGGATTCAGTCAACCAACGAGACAGAATATCAAGTCTACCAGATGTAGTTCTAGTTATG 60
||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGATTCAATTTACCAACGAGACAGAATATCAAGTCTACCAGATGTAGTTCTGGTTATG 60
Query 61 ATCCTCTCTTTCTTGTCCTTCAAGGATAATGTAAAGACGAGCATTCTCTCAAAGCGTTGG 120
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||
Sbjct 61 ATCCTCTCTTTCTTGTCCTTCAAGGATAATGTAAAGACGAGCGCTCTCTCGAAGCGCTGG 120
Query 121 AGGAATATTTGCTATGAAGCAAAGAACATTTCCTTTAAGGAATCAGAGTATGTGGAC-AT 179
||||| | || |||||| ||| ||||||||||||||||||||| |||||||||||| |
Sbjct 121 AGGAACCTCTGTTATGAAACAAGGAACATTTCCTTTAAGGAATCCGAGTATGTGGACCA- 179
Query 180 CTCTGTGTTTGACTATGTCTCCAAACGGGTATCATTTGTTCGGTATATGCTCAACTGGGT 239
|| ||| | |||||| |||| ||| |||| ||||||||||| |||||||||||||||||
Sbjct 180 CTATGTCTCCGACTATATCTCTAAAAGGGTGTCATTTGTTCGCTATATGCTCAACTGGGT 239
Query 240 CTCTAGAGTTCCCATTAAGGTTATCGAAAGTTTTGAAATTTGTCTCGGTTTTCCGGTGGG 299
|||||||||||||||| ||||||||||||||||||||||||||||| | ||| |||||
Sbjct 240 CTCTAGAGTTCCCATTCAGGTTATCGAAAGTTTTGAAATTTGTCTCTCTAATCCAGTGGG 299
Query 300 CTTCGAGGTAGAGATCAAGTCATTGATTGAGTTTTCCATCTCTAGACAAGTAAAGAAGTT 359
|||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 300 CTTCGAGGCAGATATCAAGTCTTTGATTGAGTTTTCCATCTCTAGACAAGTGAAGAACTT 359
Query 360 AGTTCTTGATTTCTCAAGCCCTTTTTGG-GATAACACATGGGATGGGTTGAGAAATGATG 418
|||||||||||||||||||||||||||| | | |||||||||||||||||||| ||||||
Sbjct 360 AGTTCTTGATTTCTCAAGCCCTTTTTGGAG-TCACACATGGGATGGGTTGAGATATGATG 418
Query 419 ACTTTGTTATTGAATTGCCCGCACTCATTTACGGTCTACAAACCCTCGAATCATTGACGA 478
|||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| ||
Sbjct 419 ACTTTGTTATTGTCTTGCCTGCACTCATTTACGGTCTACAAACCCTTGAATCATTGAAGA 478
Query 479 TTTACGCATGCATGTTTGACCCTTCGA-GATTCACAAACGTAGGACTAAGAACGCTCTCT 537
|||| || ||| |||||||||| |||| | ||| ||||| |||||||||||| |||||||
Sbjct 479 TTTATGCTTGCTTGTTTGACCCCTCGAAG-TTCGCAAACTTAGGACTAAGAAAGCTCTCT 537
Query 538 ATTGGTTGGTTTAGACTTGAAAAGATCGAATCTTTGTTATCAAAGTTTCCTTTGCTTGAG 597
||||||||||| |||||| ||||||||||||||||| |||||||||| ||||||||||||
Sbjct 538 ATTGGTTGGTTCAGACTTAAAAAGATCGAATCTTTGCTATCAAAGTTCCCTTTGCTTGAG 597
Query 598 AGTCTGAGTATTATCTCTTGTTACCTTGATGAGGTTAAGTTAGCTGGGCAAATTAGAGTC 657
||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 598 AGTCTGAGTATAATCTCTTGTTACCTTGATGAGATTATGTTAGCTGGGCAAATTAGAG-- 655
Query 658 AGAGAACTGATCATCGATAACTGCATTATCCCT-ACCATGTATTGTTTGTTAAACCTACC 716
| | |||||||| || ||||||||||||||| || |||| || || ||| ||||||||
Sbjct 656 A-A---CTGATCATTGAGAACTGCATTATCCCTTAC-ATGTCTTATTCGTTTAACCTACC 710
Query 717 TAACATAGAAATCTTCAAGTACTCCGGAAATGTCATCGTCTTCGATTTT-CAGAAAGTGA 775
|||||||||||||||||||||||| || || | ||| |||| |||||| | |||||||
Sbjct 711 TAACATAGAAATCTTCAAGTACTCAGGCGATCTTATCTTCTTTGATTTTGC-GAAAGTGG 769
Query 776 ATATGATATTGTTGAAAGAGGTTTACTTAGAtttttttATAGAGCATGAA-AATGACGAA 834
|||||||||| ||||||| || |||||||| ||| | ||||| || || ||||| |||
Sbjct 770 ATATGATATTACTGAAAGAAGTGTACTTAGAATTTGGTGTAGAGTAT-AATAATGATGAA 828
Query 835 CCAACCTATTCA-CCTAAAGAAGCTGGAGATATTCTTTCCCATCTTCTTAATGATCTTCG 893
|||| || |||| || || ||||| ||| |||| ||||| ||||| ||||||||||||||
Sbjct 829 CCAAGCTTTTCAACCGAA-GAAGCCGGAAATATGCTTTCTCATCTGCTTAATGATCTTCG 887
Query 894 ATCTTCTAGGACTTTGACCGTCTGCTCTTATCTCCTTGAGGTGATTTCAGAATGTAACGA 953
| |||||||||| || | ||||||||||||||||||||||||||| |||||||||||||
Sbjct 888 ACCTTCTAGGACCTTAATTGTCTGCTCTTATCTCCTTGAGGTGATTCCAGAATGTAACGA 947
Query 954 TCCGGTTGATATGCTTCGTGATGTCCAAGCACAACATTTGGTGCTAGAAACCC-TCATGC 1012
|||||||||||||||| |||| || || |||||||||||||||||||||| | | |||
Sbjct 948 TCCGGTTGATATGCTTTGTGACCTCAAAACACAACATTTGGTGCTAGAAACGCATT-TGC 1006
Query 1013 ATCCGAACGAGTTTACGGGTATGAGGCTCCTTCTTGATCATTGCCCGAACTTAGAGACCC 1072
|||||| ||||||| ||| || | ||||||||||||||||||||||||||||||||| |
Sbjct 1007 ATCCGATGGAGTTTAGGGGAATCAAGCTCCTTCTTGATCATTGCCCGAACTTAGAGACTC 1066
Query 1073 TCACGTTCCAGCTTCTTTGTCTAAAACCTTTCCCTATGGCTTCACATGGTGGC-TCCAGT 1131
| || ||| || |||||| | || ||||||||||||||||||| |||| ||| | |||
Sbjct 1067 TTACTTTCAAGATTCTTTCACCAAGACCTTTCCCTATGGCTTCAAATGGCGGCATA-AGT 1125
Query 1132 TCACATACATTATGGCTGGAAAACATCTCATCAAGGTGTTTGAGAAGGACTCTCAAGATC 1191
||||| | ||| ||||||||||| |||||||| ||||||||||||||||||||||||| |
Sbjct 1126 TCACAGATATTTTGGCTGGAAAATATCTCATCCAGGTGTTTGAGAAGGACTCTCAAGACC 1185
Query 1192 CTTGTGGTTAGGGGTTTTTGTAATAGCTGGAACGAGTTCTATTTATTGAACTATTTGGTT 1251
|| ||||| | ||||| ||||| ||| ||||||||||| ||||| ||||||||||| |||
Sbjct 1186 CTAGTGGTCAAGGGTTATTGTAGTAGTTGGAACGAGTTTTATTTGTTGAACTATTTTGTT 1245
Query 1252 CTGCCGGAGCATGGGTTTGCATTGGAAAGAGTTGAACTTTACTTGCCTCC--G-TTGCAA 1308
| ||||| |||||||| ||||||||||||||||||||| ||| |||| | | ||| ||
Sbjct 1246 CAGCCGGCGCATGGGTATGCATTGGAAAGAGTTGAACTCTACATGCCGACTTGGTTGAAA 1305
Query 1309 GAAA-TGCCAAGGCAGTGGGC-CTATCATGGAGCCGCGATGTTACAAAAAACTTCAAATC 1366
|||| || |||||||||||| | || |||| ||||||||||| |||| ||||||||||
Sbjct 1306 GAAACTGA-AAGGCAGTGGGCAC-ATTATGGTGCCGCGATGTTGCAAAGCACTTCAAATC 1363
Query 1367 GAGTACAAGTTATTTTGCACA 1387
|||||||||||||||||||||
Sbjct 1364 GAGTACAAGTTATTTTGCACA 1384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52145545405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5