BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G29970.1
Length=441
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323026 jgi|Araly1|323026|fgenesh1_pm.C_scaffold_5000570 438 1e-122
> Ahg323026 jgi|Araly1|323026|fgenesh1_pm.C_scaffold_5000570
Length=264
Score = 438 bits (237), Expect = 1e-122
Identities = 255/264 (97%), Gaps = 0/264 (0%)
Strand=Plus/Plus
Query 89 ATGGGGCGTTGGGTGAGACCTGAGGTGTACCCTCTTCTTGGAGCAATGGGATTTGTGACA 148
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGCGTTGGGTGAGACCTGAGGTATACCCTCTTCTTGGAGCAATGGGATTTGTGACA 60
Query 149 TCTATGGTTGTGTTTCAACTCACAAGAAATGCATTCTTAAACCCTGACTGCagaataaat 208
||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 61 ACTATGGTTGTGTTCCAACTCACAAGAAACGCATTGTTAAACCCTGACTGCAGAATAAAT 120
Query 209 aaagagcatagaaaaatgggaattctagaaaataaagacgaaggagaaaaataTGCACAA 268
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 121 AAAGAGCATAGAAAAATGGGAATTCTTGAAAACGAAGACGAAGGAGAAAAATATGCACAA 180
Query 269 CACAATTTTCGCAAGTATCTAAGGACCCGTCAACCTCAAGTTATGCCTTCACTCAACCGT 328
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 CACAATTTTCGCAAGTATCTAAGGACCCGTCAACCTCAAGTGATGCCTTCACTCAACCGT 240
Query 329 TTCTTCTCTCAAGAGGACAACTAA 352
||||||||||||||||||||||||
Sbjct 241 TTCTTCTCTCAAGAGGACAACTAA 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15910880613
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5