BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G30210.1
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484718 jgi|Araly1|484718|fgenesh2_kg.5__710__AT3G30210.1 1565 0.0
> Ahg484718 jgi|Araly1|484718|fgenesh2_kg.5__710__AT3G30210.1
Length=1184
Score = 1565 bits (847), Expect = 0.0
Identities = 1078/1186 (91%), Gaps = 29/1186 (2%)
Strand=Plus/Plus
Query 2 AAACACCCACAAAAAGTAAGAAGTGACTGTTGTCAAGCATATAATAGAGATCCACATACT 61
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1 AAACACCCACAAAAAGTAAGAAGTGACTGTTGTCAAGCATA-AATAGAGATACACATACT 59
Query 62 ATTTATATCCACACGCACATGTTCAAGCAGAGACA-AAGATATAGAAAACATAAACATAG 120
|||||||| |||||||||||||||||||||||||| || | |||| ||||||| ||||||
Sbjct 60 ATTTATATACACACGCACATGTTCAAGCAGAGACACAA-ACATAG-AAACATACACATAG 117
Query 121 AAGAGCAAATTAAGCAACAGTCTTACACAGACAGAAGTTGTAGAATTGATTTGTGAGTGA 180
||||||||||||||||||||||| ||||||||||||||| ||| |||| |||||| ||||
Sbjct 118 AAGAGCAAATTAAGCAACAGTCTCACACAGACAGAAGTTATAGTATTGGTTTGTGTGTGA 177
Query 181 AA-AACTATTTAAG-ACTGAACAAGTATGCTTGATTGGGGAGTTCAAGGTCATCATCAAA 238
|| | | ||| || | | |||| ||||||||||||||||||||||||| ||||||||||
Sbjct 178 AAGGA-T-TTTTAGAATTTAACAGGTATGCTTGATTGGGGAGTTCAAGGCCATCATCAAA 235
Query 239 AGCATGATCATGATATTTATCAACAACAACATCAACAACAAGGATGTAGGAAGGGACCAT 298
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 236 AGCATGATCATGATCTTTATCAACAACAACATCAACAACAAGGATGTAGAAAGGGACCAT 295
Query 299 GGACACTTGAAGAAGACAAGCTTCTCGCAGAGTATGTTACTTCGCATGGTGAAGGAAGAT 358
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 296 GGACACTTGAAGAAGATAAGCTTCTGGCGGAGTATGTTACTTCGCATGGTGAAGGAAGAT 355
Query 359 GGAGCACTGTAGCTAAGTGTGCAGGGTTGAATAGAAGTGGTAAAAGCTGTAGACTAAGGT 418
|||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 356 GGAGCACTGTTGCTAAGTGTGCAGGTTTGAAAAGAAGTGGTAAAAGCTGTAGACTAAGGT 415
Query 419 GGGTGAACTACTTGAGGCCAGGGCTTAAGAGAGGACAAATCACTCCTCAAGAAGAAGGAA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 GGGTGAACTACTTGAGGCCAGGGCTTAAGAGAGGACAAATCACTCCTCAAGAAGAAGGAA 475
Query 479 TCATCCTTGAACTTCATTCCCTTTGGGGTAACAAGTGGTCTACAATCGCAAGATATTTAC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TCATCCTTGAACTTCATTCCCTTTGGGGTAACAAGTGGTCTACAATCGCAAGATATTTAC 535
Query 539 CAGGACGAACCGATAATGAAATAAAAAACTACTGGAGAACACATTACAAGAAAAACCAAA 598
|||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 536 CAGGTCGAACAGATAATGAAATCAAAAACTATTGGAGAACACATTACAAGAAAAAAGAAA 595
Query 599 AA-TCTTCTTCGAAGCAAGACAAAGTaaaaaaaTCTCTATCCCGGAAACAACAACAAGTG 657
|| | ||||||||||||||||||||| |||| |||||||||||||||||||||| | ||
Sbjct 596 AAAT-TTCTTCGAAGCAAGACAAAGTCAAAAGATCTCTATCCCGGAAACAACAA-A--TG 651
Query 658 GATCTTAAACCACAACCACAAGCACAATCTGAGAATCATCAGTCTCAGCTAGTGTCCCAA 717
||||||||||| |||| | | || || | |||||||||||| |||||| |||||
Sbjct 652 GATCTTAAACCGCAAC-A-A--CA------GA-A-TCATCAGTCTCAACTAGTGCCCCAA 699
Query 718 GATCACATGAATATCGACAACGATCATAACATAGCTTCATCCTTGTATTACCCGACAAGT 777
|| ||||||||||||||||||||||| ||||||| || | |||||||||||| | |||
Sbjct 700 GACCACATGAATATCGACAACGATCAAAACATAGAGTCCGCTTTGTATTACCCGGCTAGT 759
Query 778 GTCTTCGATGACAAATTATATATGCCTCAAAGTGTAGCAACAACCTCATCCGACCACTCT 837
|||||||||||| |||| | ||||||||||| ||| ||||||||||||||||||||||||
Sbjct 760 GTCTTCGATGACCAATTTTCTATGCCTCAAATTGTTGCAACAACCTCATCCGACCACTCT 819
Query 838 ATGATCGATGAAGGTCACTTGTGGGGCAGCTTGTGGAATCTAGACGAGGATGATCCGCAT 897
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 820 ATGATCGATGAAGGTCACTTGTGGGGCAGCTTGTGGAATCTAGATGATGATGATCCACAC 879
Query 898 AGCTTT-GGTGGTGGCTCAGGACAGGGAACAGCTGCGGATATTGATGAGAAGTTTCCAGA 956
| ||| |||||||||||||||||| ||||||||| |||||| ||||||||||||||
Sbjct 880 GG-TTTCGGTGGTGGCTCAGGACAGAGAACAGCTGAAAATATTGCTGAGAAGTTTCCAGG 938
Query 957 CAGCGGAATTGAGGCCCCGTCGTGTGGCTCAGGGGATTATAGTTATACTGGAGTTTACAT 1016
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 939 CAGCGGAATTGAGGCCCCATCGTGTGGCTCAGGGGATTATAGTTATACTGGCTTTTACAT 998
Query 1017 GGGAGGCTATATTTTTTGATTAGTATGCTCGAAGATATCAAGAAGTTGTGTCTTCGTAG- 1075
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 999 GGGAGGCTATATTTTTTAATTAGTATGCTCGAAGATATCAAGAAGTTGTGTCTTCGTATT 1058
Query 1076 GTTGAGaaaaaaaTTAAAACACCTCATTGTGTAATTTATAACTTTAGTAGTGATCTAAAA 1135
||||| | ||||||||||| ||||||||||||| ||| |||||||| || | ||||||||
Sbjct 1059 GTTGATAGAAAAATTAAAAGACCTCATTGTGTATTTTCTAACTTTAATAAT-ATCTAAAA 1117
Query 1136 CTAGAGTGGAGTGAGGCTAATAAGATGGTTTGGAATATATATGTCT 1181
|||| ||| |||||||||||| |||||||| ||| ||||| |||
Sbjct 1118 ATAGAACGGACTGAGGCTAATAAAATGGTTTGAAATCTATATTTCT 1163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45709377483
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5