BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G30260.1
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896948 jgi|Araly1|896948|Al_scaffold_0005_914 1048 0.0
> Ahg896948 jgi|Araly1|896948|Al_scaffold_0005_914
Length=738
Score = 1048 bits (567), Expect = 0.0
Identities = 693/752 (92%), Gaps = 16/752 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAGAGGAAGGGTTCAGCTACGGCGGATCGAGAATAAGATAAGGAGACAAGTGACA 60
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGGAAGGGGAAGGGTTCAGCTACGGCGGATCGAGAACAAGATAAGGAGACAAGTGACA 60
Query 61 TTTTCAAAGCGAAGGACCGGTTTGGTAAAGAAAGCTCAAGAGATCTCAGTGTTATGTGAT 120
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TTTTCAAAGCGAAGAACCGGTTTGGTTAAGAAAGCTCAAGAGATCTCAGTGTTATGTGAT 120
Query 121 GCTGAAGTTGCTTTGATTGTTTTCTCCCCCAAAGGCAAACTCTTTGAGTACTCTGCTGGT 180
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 121 GCTGATGTTGCTTTGATTGTCTTCTCCCCCAAAGGCAAGCTCTTTGAGTACTCTGCTGGT 180
Query 181 TCCAGCATGGAGAGAATTCTTGATCGATATGAGAGGTCTGCCTACGCCGGTCAAGATATT 240
|||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 181 TCCAGCATGGGGAGAATTCTTGATCGATATGAGAGATCTTCCTACGCCGGTCAAGATATT 240
Query 241 CCTACACCAAATTTGGATTCACAGGGAGAGTGCTCAACAGAATGTTCAAAGCTCTTGAGG 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 CCTACACCAAATTTGGATTCACAGGGAGAGTGTTCAACAGAATGTTCAAAGCTCTTGAGG 300
Query 301 ATGATTGATGTCCTGCAAAGAAGCCTGAGGCACTTAAGAGGAGAAGAGGTGGATGGTCTA 360
|||||||||||| ||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct 301 ATGATTGATGTCATGCAAAGAAGCCTAAGACACTTAAGAGGAGAAGAGGTGGATGATCTA 360
Query 361 AGTATCAGAGACCTTCAAGGTGTGGAGATGCAACTTGATACTGCCCTCAAGAAAACTCGC 420
|| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGCATCAGAGAGCTTCAAGGTTTGGAGATGCAACTTGATACTGCCCTCAAGAAAACTCGC 420
Query 421 TCTAGAAAGAACCAGCTCATGGTAGAGTCCATAGCACAGCTTCAGAAAAAGGAGAAGGAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTAGAAAGAACCAGCTCATGGTAGAGTCCATAGCACAGCTTCAGAAAAAGGAGAAGGAA 480
Query 481 CTAAAAGAACTGAAGAAACAGCTAACAAAGAAGGCTGGTGAAAGGGAAGACTTTCAAAC- 539
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
Sbjct 481 CTAAAAGAACTGAAGAAACAGCTAACAAAGAAGGCTGGTCAAAGAGAAGACTTTCAG-CT 539
Query 540 GCAAAACCTCAGCCATGACTTAGCCTCCTTGGCAACACCGCCATTTGAATCACCCCATGA 599
|||||||||||||||||||||| |||||| |||||| ||||||| |||| |||| || ||
Sbjct 540 GCAAAACCTCAGCCATGACTTATCCTCCTCGGCAACGCCGCCATATGAACCACCGCACGA 599
Query 600 GCTTCGCCGGAC-AATATctcctcctcctcctcctTTATCTTCGGGGGATACATCACAAA 658
||| | || || |||||||||||||||| | | | | || |||| || || | |||
Sbjct 600 GCTGCCCCC-ACCAATATCTCCTCCTCCTG-TA-TCT-T-TT-GGGG-ATGCA-C-CAA- 649
Query 659 GGGATGGAGTTGGAGAAGTAGCTGCCGGAACCCTAATTCGAAGGACGAATGCAACGTTGC 718
|| ||||||| |||||||||||||| |||||||||||||| ||||| | |||||||||
Sbjct 650 GGAATGGAGTGGGAGAAGTAGCTGCTGGAACCCTAATTCGGAGGACTA---CAACGTTGC 706
Query 719 CTCATTGGATGCCCCAGCTCACCGGAGAATAG 750
| ||||||||||||| ||||||| ||||||||
Sbjct 707 CGCATTGGATGCCCCGGCTCACCAGAGAATAG 738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27639114825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5