BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G30260.1 Length=750 Score E Sequences producing significant alignments: (Bits) Value Ahg896948 jgi|Araly1|896948|Al_scaffold_0005_914 1048 0.0 > Ahg896948 jgi|Araly1|896948|Al_scaffold_0005_914 Length=738 Score = 1048 bits (567), Expect = 0.0 Identities = 693/752 (92%), Gaps = 16/752 (2%) Strand=Plus/Plus Query 1 ATGGGAAGAGGAAGGGTTCAGCTACGGCGGATCGAGAATAAGATAAGGAGACAAGTGACA 60 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1 ATGGGAAGGGGAAGGGTTCAGCTACGGCGGATCGAGAACAAGATAAGGAGACAAGTGACA 60 Query 61 TTTTCAAAGCGAAGGACCGGTTTGGTAAAGAAAGCTCAAGAGATCTCAGTGTTATGTGAT 120 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 61 TTTTCAAAGCGAAGAACCGGTTTGGTTAAGAAAGCTCAAGAGATCTCAGTGTTATGTGAT 120 Query 121 GCTGAAGTTGCTTTGATTGTTTTCTCCCCCAAAGGCAAACTCTTTGAGTACTCTGCTGGT 180 ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 121 GCTGATGTTGCTTTGATTGTCTTCTCCCCCAAAGGCAAGCTCTTTGAGTACTCTGCTGGT 180 Query 181 TCCAGCATGGAGAGAATTCTTGATCGATATGAGAGGTCTGCCTACGCCGGTCAAGATATT 240 |||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 181 TCCAGCATGGGGAGAATTCTTGATCGATATGAGAGATCTTCCTACGCCGGTCAAGATATT 240 Query 241 CCTACACCAAATTTGGATTCACAGGGAGAGTGCTCAACAGAATGTTCAAAGCTCTTGAGG 300 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 241 CCTACACCAAATTTGGATTCACAGGGAGAGTGTTCAACAGAATGTTCAAAGCTCTTGAGG 300 Query 301 ATGATTGATGTCCTGCAAAGAAGCCTGAGGCACTTAAGAGGAGAAGAGGTGGATGGTCTA 360 |||||||||||| ||||||||||||| || ||||||||||||||||||||||||| |||| Sbjct 301 ATGATTGATGTCATGCAAAGAAGCCTAAGACACTTAAGAGGAGAAGAGGTGGATGATCTA 360 Query 361 AGTATCAGAGACCTTCAAGGTGTGGAGATGCAACTTGATACTGCCCTCAAGAAAACTCGC 420 || |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 361 AGCATCAGAGAGCTTCAAGGTTTGGAGATGCAACTTGATACTGCCCTCAAGAAAACTCGC 420 Query 421 TCTAGAAAGAACCAGCTCATGGTAGAGTCCATAGCACAGCTTCAGAAAAAGGAGAAGGAA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TCTAGAAAGAACCAGCTCATGGTAGAGTCCATAGCACAGCTTCAGAAAAAGGAGAAGGAA 480 Query 481 CTAAAAGAACTGAAGAAACAGCTAACAAAGAAGGCTGGTGAAAGGGAAGACTTTCAAAC- 539 ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| | Sbjct 481 CTAAAAGAACTGAAGAAACAGCTAACAAAGAAGGCTGGTCAAAGAGAAGACTTTCAG-CT 539 Query 540 GCAAAACCTCAGCCATGACTTAGCCTCCTTGGCAACACCGCCATTTGAATCACCCCATGA 599 |||||||||||||||||||||| |||||| |||||| ||||||| |||| |||| || || Sbjct 540 GCAAAACCTCAGCCATGACTTATCCTCCTCGGCAACGCCGCCATATGAACCACCGCACGA 599 Query 600 GCTTCGCCGGAC-AATATctcctcctcctcctcctTTATCTTCGGGGGATACATCACAAA 658 ||| | || || |||||||||||||||| | | | | || |||| || || | ||| Sbjct 600 GCTGCCCCC-ACCAATATCTCCTCCTCCTG-TA-TCT-T-TT-GGGG-ATGCA-C-CAA- 649 Query 659 GGGATGGAGTTGGAGAAGTAGCTGCCGGAACCCTAATTCGAAGGACGAATGCAACGTTGC 718 || ||||||| |||||||||||||| |||||||||||||| ||||| | ||||||||| Sbjct 650 GGAATGGAGTGGGAGAAGTAGCTGCTGGAACCCTAATTCGGAGGACTA---CAACGTTGC 706 Query 719 CTCATTGGATGCCCCAGCTCACCGGAGAATAG 750 | ||||||||||||| ||||||| |||||||| Sbjct 707 CGCATTGGATGCCCCGGCTCACCAGAGAATAG 738 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27639114825 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5