BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G30280.1
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936799 jgi|Araly1|936799|scaffold_500990.1 1929 0.0
> Ahg936799 jgi|Araly1|936799|scaffold_500990.1
Length=1373
Score = 1929 bits (1044), Expect = 0.0
Identities = 1240/1336 (93%), Gaps = 8/1336 (1%)
Strand=Plus/Plus
Query 1 ATGGAGACAATGAAGGTAGAAACAATTGCTAAGGAAATCATAAAACCATCTTCCACAACT 60
|||||||| |||||||| ||||| || ||||| |||||||||||||||||||||||||||
Sbjct 21 ATGGAGACGATGAAGGTTGAAACCATCGCTAAAGAAATCATAAAACCATCTTCCACAACT 80
Query 61 CCAAATGATCTCCAAACTCTCCAACTCTCTATTTATGATCACATCCTCCCTCCTGTTTAC 120
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 81 CCAAATGATCTCCAAACTCTCCAACTTTCTATTTATGATCACATTCTCCCTCCTGTTTAC 140
Query 121 ACAGTCGCCTTTCTCTTCTACACAAAAGATGATTTGATCTCTCCTGAACAAAGTTCTCAC 180
|||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||| ||
Sbjct 141 ACAGTCGCATTTCTCTTCTACACAAAAGATGACTTGATCTCTCCAGAACACAGTTCCCAA 200
Query 181 AAACTCAAGACTTCTCTTG-CCGAAACCTTGACAAAATTCTACCCTCTTGCAGGCAGAAT 239
|||||||||||||||| || ||||||||||||| ||||||||||||||||| ||||||||
Sbjct 201 AAACTCAAGACTTCTC-TGTCCGAAACCTTGACCAAATTCTACCCTCTTGCTGGCAGAAT 259
Query 240 CAAAGGCGTCACCATCGATTGTAACGACGAAGGAGCTGTTTTTGTTGACGCTCGTGTCAA 299
||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 260 CAACGGCGTCACCATAGATTGTAACAACGAAGGAGCTGTTTTTGTTGACGCTCGTGTCAA 319
Query 300 TAACTATCCTCTCTCTGATTTCCTGAGATCTCCGGATTTTAAAACCCTCCAACAGTTACT 359
||||| |||||||| |||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 320 TAACTGTCCTCTCTATGATTTCCTGAGATCTCCGGATTTCAAAACCCTCCAGCAGTTACT 379
Query 360 TCCTCTGGACGTCATCGATGATCCTTACGAGGCAGCTACTACATGGCCTTTGCTACTCGT 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 380 TCCTCTGGACGTCATCGATGATCCTTACGAGGCAGCTACTACATGGCCTTTGCTGCTAGT 439
Query 420 GAAGGCGACTTACTTTCCATGTGGTGGCATGGCCATAGGATTATGCATCACTCACAAAAT 479
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 440 GAAGGCGACTTACTTTCCATGTGGTGGCATGGCCATAGGAATCTGCATCACTCACAAAAT 499
Query 480 CGCGGACGCAACCTCCATCTCAACTTTCATTCAGTCTTGGGCTGCTATGGCTCGAGGAGA 539
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 500 CGCGGACGCAACCTCCATCTCGACTTTCATTCAGTCTTGGGCTGTTATGGCTCGAGGAGA 559
Query 540 GGCTGGCGACATAGTGGCTGATCCCGTGTTTGCGGCAGCAAATTTCTACCCACCAGCAAA 599
|||||||||| |||||| | ||||| |||||||||||||||||||||||||||||| ||
Sbjct 560 GGCTGGCGACGCAGTGGCCGGTCCCGAGTTTGCGGCAGCAAATTTCTACCCACCAGCCAA 619
Query 600 TGAGTTATTTAAGTTTCCGGTTGACGAAAATGCCAACAAGATAAGCCA-AATAACGAAGA 658
|||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||
Sbjct 620 TGAGTTATTTAAGTTTCCGGTTGATGAAAATGCCAACAAGATAAGT-AGAATAACGAAGA 678
Query 659 GATTCGTGTTCAGTGCGTCTAAGTTGGAAGAGCTCAGGACCAAAGCAGCTAGTGAAGACT 718
||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 679 GATTCGTGTTCAGTGCGTCCAAGTTGGAAGAGCTCAGGACCAATGCCGCTAGTGAAGACT 738
Query 719 TTGTAGGCCGGCCTA-AGCGGGTGGAAAGTGTCACTGCGCTTCTTTGGAAAGCCTTTGTT 777
|||||| ||| |||| | ||||||||||| |||||||| ||||||||||||||| | |||
Sbjct 739 TTGTAGCCCGACCTACA-CGGGTGGAAAGCGTCACTGCACTTCTTTGGAAAGCCATCGTT 797
Query 778 GCAGCTGCATCCTCAAATACA-AATGCTTGTGATATGAAGGTATTGATCCAGCCCTCTAA 836
| ||||| ||||||||| | | |||||||||||||||||||| |||||||||||||||||
Sbjct 798 GAAGCTGGATCCTCAAACA-ATAATGCTTGTGATATGAAGGTCTTGATCCAGCCCTCTAA 856
Query 837 CTTGCGCCCCAAGATACCTTCTCTTTTGGCAGAAAGCCTGATCGGAAACATAATGTTCTC 896
|||||||||||||||||| || ||| | | ||||||||||| ||||| |||||||||||
Sbjct 857 CTTGCGCCCCAAGATACCGTCCCTTCTACCTGAAAGCCTGATTGGAAATATAATGTTCTC 916
Query 897 TTCTGTGGTCTTGGGTATTAGTCAACAAGAGGAAATTAAAATTGAAAAGGCAGTTCGAGA 956
|||||| |||||| ||||||||||| |||||||| |||||||||||||||| ||| ||||
Sbjct 917 TTCTGTCGTCTTGAGTATTAGTCAAGAAGAGGAAGTTAAAATTGAAAAGGCCGTTAGAGA 976
Query 957 CTTACGAAAACAGGGAGATGACTTGCAAAATGTAATCAAAGAAGAGGGTGGGTCGTCTTC 1016
|||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||
Sbjct 977 CTTACGAAAAAAGGGAGATGACTTGCAATATGTAATCAAAGACGAGGGTGGGTCTTCTTC 1036
Query 1017 TGCGATGATTGGTTCTAAACTAGCAAACCTAATGCTCACTAATTATTCGAAGTTGAGCTA 1076
| ||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||
Sbjct 1037 TTCGATGATTGGTTCTAAACTAGCAAATTTAATGCTCACCAATTATTCGCAGTTGAGCTA 1096
Query 1077 TGAGACTCATGAACCCTACACCGTGAGTAGCTGGTGCAAACTACCCCTTTATGAGGCCAG 1136
||| ||||| || ||||||||||||||||||||||||||| |||| ||||||||||| ||
Sbjct 1097 TGAAACTCACGAGCCCTACACCGTGAGTAGCTGGTGCAAATTACCTCTTTATGAGGCAAG 1156
Query 1137 TTTCGGATGGGGATCACCGGTTTGGATTGCCGGTAATGTTGCTCCCATGTTAGAAAACGT 1196
||| ||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||
Sbjct 1157 TTTTGGATGGGGATCACCGGTTTGGGTTGCCGGTAATGTGGCTCCCATGTTAGACAACGT 1216
Query 1197 AACTATGTTGATTGATTCCAAGGATGGACAAGGAATTGAAGCGTTTGTCACATTGCCCGA 1256
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1217 AACTATGTTGATTGATTCCAAGGACGGACAAGGAATTGAAGCGTTTGTCACATTGCCTGA 1276
Query 1257 AGAGAACATGTTGTCTTTAGAGCAGAACACAGAACTCCTAGCCTTTGCTTCCGTGAATCC 1316
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1277 AGAGAACATGATGTCTTTCGAGCAGAACACAGAACTCCTAGCCTTTGCTTCCGTTAATCC 1336
Query 1317 TAGTGTCTTGGTCTAA 1332
|||||||||| |||||
Sbjct 1337 TAGTGTCTTGATCTAA 1352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49826652519
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5