BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G30290.1
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323032 jgi|Araly1|323032|fgenesh1_pm.C_scaffold_5000576 1895 0.0
> Ahg323032 jgi|Araly1|323032|fgenesh1_pm.C_scaffold_5000576
Length=1443
Score = 1895 bits (1026), Expect = 0.0
Identities = 1166/1233 (95%), Gaps = 12/1233 (1%)
Strand=Plus/Plus
Query 1 ATGGACCGGTTTTTTCGGACAAGCTTATTCGGAGGCAAAGTTATAATCTCAATGGATAAT 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 ATGGACCGG-TTTTTCGGACAAGCTTATTCGGAGGCAAAGTTATAATCTCAATGGATAAT 270
Query 61 GAATTGAATATGGAGATGGCAAAGACAAATCGTACTCCTGGTATCACAAAGAGCATAGCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 GAATTGAATATGGAGATGGCAAAGACAAATCGTACTCCTGGTATCACAAAGAGCATAGCA 330
Query 121 CGGCTATTTGGAGAAGACAACAACTTGTTTTTACAGAGCACAGAGTCACATAAACATGTC 180
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 331 AGGCTATTTGGAGAAGACAACAACTTGTTTTTACAGAGCACAGAGTCCCATAAACATGTC 390
Query 181 CGGAACTTGACTGTCCAGATGTTGGGTTCACAAAGTTTGAAGTTGAGGATAATGGAAAAC 240
||||||||||| |||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 391 CGGAACTTGACAATCCAAATGTTGGGTTCACAAAGTTTAAAATTGAGGATAATGGAAAAC 450
Query 241 ATTGATCTCTTGACTCGCACACACATGGAGGAAGGAGCTAGGGATGGCTCCCTTGACGTC 300
|||||||||||| |||||||||||||||| |||||| ||||| ||||||| |||||||||
Sbjct 451 ATTGATCTCTTGGCTCGCACACACATGGAAGAAGGATCTAGGAATGGCTCACTTGACGTC 510
Query 301 AAGGAAACAACAAGCAAAATTCT-AATTGAATGCCTTGCAAAGAAAGTTATGGGCGAGAT 359
|||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct 511 AAGGAAACAACAAGCAAAAT-CTTAATTGAATGCCTTGCAAATAAAGTTATGGGCGAGAT 569
Query 360 GGAACCAGAGGCGGCGAAAAAACTCGCACTT-TGTTGGAGATATTTTCCGAGTGGCTGGT 418
||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 570 GGAACCAGAGGCGGCGAAAAAACTCGC-CATATGTTGGAGATATTTTCCGAGTGGCTGGT 628
Query 419 TTCGGTTACCTTTCAACTTACCTGGGAT-AGGTGTCTATAATATGATGAAGGCGAGAAAA 477
||||| | ||||||||||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 629 TTCGGCTCCCTTTCAACTTTCCTGGG-TCAGGTGTCTATAATATGATGAAGGCGAGAAAA 687
Query 478 AGGATGAAGACGTTGCTAAAGGAGGAAGTGTTGAAGAAGAGAGAAGCCGGAGAGGAGTTT 537
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 AGGATGAAGAAGTTGCTAAAGGAGGAAGTGTTGAAGAAGAGAGAAGCCGGAGAGGAGTTT 747
Query 538 GGAGAGTTCTCTAAGATTATATTTGGAGAAAAAGAAGGAGAAAAGGAAACAATGAGCATG 597
|| ||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 748 GGGGAGTTCTTTAAGACCATATTTGGAGAAATAGAAGGAGAAAAGGAAACAATGAGCATG 807
Query 598 AAGAATGTGATTGAGTACATATATACCTTCTTTGTGATTGCTAATGAAACAACACCAAGG 657
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 808 GAGAATTTGATTGAGTACATATATACCTTCTTTGTGATTGCTAATGAAACAACGCCACGG 867
Query 658 ATTCTTGCGGCTACCGTGAAGTTCATAAGTGAAAATCCTAAAGTCATGCAAGAGCTTCAG 717
||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 868 ATTCTTGCGGCGACCGTGAAGCTCATAAGTGAAAATCCTAAAGTCAAGCAAGAGCTTCAG 927
Query 718 AGAGAGCATGCAATGATATTTGAAAATAAGTCTGAG---GAG-GCCGGCTTAACATGGGA 773
|||||||||||||| || |||| ||||||||||||| ||| | ||| ||||||||||
Sbjct 928 AGAGAGCATGCAATAATTTTTGGAAATAAGTCTGAGAATGAGAGT-GGCCTAACATGGGA 986
Query 774 AGACTATAAATCCATGACGTTCACCAATATGGTGATCAATGAGTCTCTTAGGATCTCAAC 833
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 AGACTATAAATCGATGACGTTCACCAATATGGTGATCAATGAGTCTCTTAGGATCTCAAC 1046
Query 834 CACAGTGCCTGTAATTCTTAGAAAACCTGATCATGACACTAAAGTCGGTGATTATACAAT 893
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1047 CACAGTGCCTGTAATTCTTAGAAAACCTGATCATGACATTGAAGTCGGTGATTATACAAT 1106
Query 894 TCCAGCGGGTTGGAACTTCATGGGCTATCCTAGTGCCCATTTTGATCCAACAAAGTATGA 953
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||
Sbjct 1107 TCCAGCGGGTTGGAACTTCATGGGCTATCCTAGTGCCCATTTCGATCCAAAAAAGTACGA 1166
Query 954 GGATCCTTTAGAATTTAATCCATGGCGTTGGAAGGGAAACGACTTGGACGCGATCGTCTC 1013
||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 1167 GGATCCTTTAGTATTTAATCCGTGGCGTTGGAAGGGAAAAGACTTGGACGCGATAGTCTC 1226
Query 1014 CACGAATTACATTCCCTTTGGGGCTGGTCCTAGACTTTGTGTTGGGGCTTACTTTGCTAA 1073
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1227 CAAGAATTACATTCCCTTTGGAGCTGGTCCTAGACTTTGTGTTGGGGCTTACTTTGCTAA 1286
Query 1074 GTTGTTGATGGCCATTTTTATCCACCATTTGTGTAGATATAGGTGGTCAATGAAAGCAGA 1133
| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1287 GCTGTTGATGGCCATTTTTCTACACCATTTGTGTAGATATAGGTGGTCAATGAAAGCAGA 1346
Query 1134 GGTCACAGTAACTCGAAGCTATATGCTCATGTTTCCTCGTGGATGTGACGTTCAAATCTC 1193
||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||
Sbjct 1347 GGTCACAGTAACTCGAAGCTATATGCTTATGTTTCCTCGTGGATGTGATGTTCAATTCTC 1406
Query 1194 AAAAGACACCCAAGAACATGATTCGGATGGGTA 1226
|||||||||||| | ||||||||||||||||||
Sbjct 1407 AAAAGACACCCACGTACATGATTCGGATGGGTA 1439
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45823746234
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5