BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G30290.1 Length=1227 Score E Sequences producing significant alignments: (Bits) Value Ahg323032 jgi|Araly1|323032|fgenesh1_pm.C_scaffold_5000576 1895 0.0 > Ahg323032 jgi|Araly1|323032|fgenesh1_pm.C_scaffold_5000576 Length=1443 Score = 1895 bits (1026), Expect = 0.0 Identities = 1166/1233 (95%), Gaps = 12/1233 (1%) Strand=Plus/Plus Query 1 ATGGACCGGTTTTTTCGGACAAGCTTATTCGGAGGCAAAGTTATAATCTCAATGGATAAT 60 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 212 ATGGACCGG-TTTTTCGGACAAGCTTATTCGGAGGCAAAGTTATAATCTCAATGGATAAT 270 Query 61 GAATTGAATATGGAGATGGCAAAGACAAATCGTACTCCTGGTATCACAAAGAGCATAGCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 271 GAATTGAATATGGAGATGGCAAAGACAAATCGTACTCCTGGTATCACAAAGAGCATAGCA 330 Query 121 CGGCTATTTGGAGAAGACAACAACTTGTTTTTACAGAGCACAGAGTCACATAAACATGTC 180 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 331 AGGCTATTTGGAGAAGACAACAACTTGTTTTTACAGAGCACAGAGTCCCATAAACATGTC 390 Query 181 CGGAACTTGACTGTCCAGATGTTGGGTTCACAAAGTTTGAAGTTGAGGATAATGGAAAAC 240 ||||||||||| |||| |||||||||||||||||||| || |||||||||||||||||| Sbjct 391 CGGAACTTGACAATCCAAATGTTGGGTTCACAAAGTTTAAAATTGAGGATAATGGAAAAC 450 Query 241 ATTGATCTCTTGACTCGCACACACATGGAGGAAGGAGCTAGGGATGGCTCCCTTGACGTC 300 |||||||||||| |||||||||||||||| |||||| ||||| ||||||| ||||||||| Sbjct 451 ATTGATCTCTTGGCTCGCACACACATGGAAGAAGGATCTAGGAATGGCTCACTTGACGTC 510 Query 301 AAGGAAACAACAAGCAAAATTCT-AATTGAATGCCTTGCAAAGAAAGTTATGGGCGAGAT 359 |||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||| Sbjct 511 AAGGAAACAACAAGCAAAAT-CTTAATTGAATGCCTTGCAAATAAAGTTATGGGCGAGAT 569 Query 360 GGAACCAGAGGCGGCGAAAAAACTCGCACTT-TGTTGGAGATATTTTCCGAGTGGCTGGT 418 ||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||| Sbjct 570 GGAACCAGAGGCGGCGAAAAAACTCGC-CATATGTTGGAGATATTTTCCGAGTGGCTGGT 628 Query 419 TTCGGTTACCTTTCAACTTACCTGGGAT-AGGTGTCTATAATATGATGAAGGCGAGAAAA 477 ||||| | ||||||||||| |||||| | ||||||||||||||||||||||||||||||| Sbjct 629 TTCGGCTCCCTTTCAACTTTCCTGGG-TCAGGTGTCTATAATATGATGAAGGCGAGAAAA 687 Query 478 AGGATGAAGACGTTGCTAAAGGAGGAAGTGTTGAAGAAGAGAGAAGCCGGAGAGGAGTTT 537 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 688 AGGATGAAGAAGTTGCTAAAGGAGGAAGTGTTGAAGAAGAGAGAAGCCGGAGAGGAGTTT 747 Query 538 GGAGAGTTCTCTAAGATTATATTTGGAGAAAAAGAAGGAGAAAAGGAAACAATGAGCATG 597 || ||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 748 GGGGAGTTCTTTAAGACCATATTTGGAGAAATAGAAGGAGAAAAGGAAACAATGAGCATG 807 Query 598 AAGAATGTGATTGAGTACATATATACCTTCTTTGTGATTGCTAATGAAACAACACCAAGG 657 ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 808 GAGAATTTGATTGAGTACATATATACCTTCTTTGTGATTGCTAATGAAACAACGCCACGG 867 Query 658 ATTCTTGCGGCTACCGTGAAGTTCATAAGTGAAAATCCTAAAGTCATGCAAGAGCTTCAG 717 ||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 868 ATTCTTGCGGCGACCGTGAAGCTCATAAGTGAAAATCCTAAAGTCAAGCAAGAGCTTCAG 927 Query 718 AGAGAGCATGCAATGATATTTGAAAATAAGTCTGAG---GAG-GCCGGCTTAACATGGGA 773 |||||||||||||| || |||| ||||||||||||| ||| | ||| |||||||||| Sbjct 928 AGAGAGCATGCAATAATTTTTGGAAATAAGTCTGAGAATGAGAGT-GGCCTAACATGGGA 986 Query 774 AGACTATAAATCCATGACGTTCACCAATATGGTGATCAATGAGTCTCTTAGGATCTCAAC 833 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 987 AGACTATAAATCGATGACGTTCACCAATATGGTGATCAATGAGTCTCTTAGGATCTCAAC 1046 Query 834 CACAGTGCCTGTAATTCTTAGAAAACCTGATCATGACACTAAAGTCGGTGATTATACAAT 893 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 1047 CACAGTGCCTGTAATTCTTAGAAAACCTGATCATGACATTGAAGTCGGTGATTATACAAT 1106 Query 894 TCCAGCGGGTTGGAACTTCATGGGCTATCCTAGTGCCCATTTTGATCCAACAAAGTATGA 953 |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| || Sbjct 1107 TCCAGCGGGTTGGAACTTCATGGGCTATCCTAGTGCCCATTTCGATCCAAAAAAGTACGA 1166 Query 954 GGATCCTTTAGAATTTAATCCATGGCGTTGGAAGGGAAACGACTTGGACGCGATCGTCTC 1013 ||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| ||||| Sbjct 1167 GGATCCTTTAGTATTTAATCCGTGGCGTTGGAAGGGAAAAGACTTGGACGCGATAGTCTC 1226 Query 1014 CACGAATTACATTCCCTTTGGGGCTGGTCCTAGACTTTGTGTTGGGGCTTACTTTGCTAA 1073 || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1227 CAAGAATTACATTCCCTTTGGAGCTGGTCCTAGACTTTGTGTTGGGGCTTACTTTGCTAA 1286 Query 1074 GTTGTTGATGGCCATTTTTATCCACCATTTGTGTAGATATAGGTGGTCAATGAAAGCAGA 1133 | ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 1287 GCTGTTGATGGCCATTTTTCTACACCATTTGTGTAGATATAGGTGGTCAATGAAAGCAGA 1346 Query 1134 GGTCACAGTAACTCGAAGCTATATGCTCATGTTTCCTCGTGGATGTGACGTTCAAATCTC 1193 ||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||| Sbjct 1347 GGTCACAGTAACTCGAAGCTATATGCTTATGTTTCCTCGTGGATGTGATGTTCAATTCTC 1406 Query 1194 AAAAGACACCCAAGAACATGATTCGGATGGGTA 1226 |||||||||||| | |||||||||||||||||| Sbjct 1407 AAAAGACACCCACGTACATGATTCGGATGGGTA 1439 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45823746234 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5