BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G30350.2

Length=772
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg323035 jgi|Araly1|323035|fgenesh1_pm.C_scaffold_5000579           390    7e-108


> Ahg323035 jgi|Araly1|323035|fgenesh1_pm.C_scaffold_5000579
Length=423

 Score =  390 bits (211),  Expect = 7e-108
 Identities = 258/281 (92%), Gaps = 2/281 (1%)
 Strand=Plus/Plus

Query  93   ATGATGCGATTCACAATCATAGTCATAGCTTTCCTTTTGATTATTCAATCCCTAGAAGAG  152
            ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct  1    ATGATGCGATTCACAATCATAGTAATAGCTTTCCTTTTGATTATTCAGTCCCTAGAGGAG  60

Query  153  GAACATATCCTAGTCTATGCTCATGAAGGTGGAGAGGCTGGTCACAAGAGTCTTGACTAT  212
            |||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||| 
Sbjct  61   GAACATGTCCTAGTCTATGCTCATGAAGGCGGAGAAGCTGGTCACAAGAGTCTTGACTAC  120

Query  213  CAAGGAGATCAAGATTCATCGACGCTGCATCCAAAAGAACTATT-CGATGCACCGAGGAA  271
            |  |||||||||||||||| ||| |||||||| |||||| | || |||||||||||||||
Sbjct  121  CTTGGAGATCAAGATTCATTGACACTGCATCCTAAAGAA-TTTTACGATGCACCGAGGAA  179

Query  272  AGTAAGGTTTGGGAGAACAACGAGAGCCGAGAAGGAACAAGTTACCGCGATGAACAATGA  331
            | ||||||  ||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct  180  ACTAAGGTCCGGGAGAACAACAAGAGCCGAGAAGGAGCAAGTGACCGCGATGAACAATGA  239

Query  332  TAGTTGGAGCTTCAAGATTTCAGGTGCATCAAAACATTTGA  372
            || |||||||||||||||||||||||||||||| |||||||
Sbjct  240  TAATTGGAGCTTCAAGATTTCAGGTGCATCAAAGCATTTGA  280


 Score =  215 bits (116),  Expect = 4e-55
 Identities = 130/137 (95%), Gaps = 0/137 (0%)
 Strand=Plus/Plus

Query  505  GCCTACCGACACTTGAACCATCTACTTCAACCAATGATATGGAGAAACTGGCTCGGTTGT  564
            ||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct  287  GCCTACCGAAACTTGAACCATCTACTCCAACCAATGATATGAAGAAACTGGCTCGGTTGT  346

Query  565  TGCGTGATGATTATCCGATCTATAGTAAGCCTCGACGCAAGCCTCCGGTCAATAATCGAG  624
            | ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct  347  TACGTGATGATTACCCGATCTATAGTAAGCCTCGACGCAAGCCACCGATCAATAATCGAG  406

Query  625  CTCCAGACAAGTTTTAA  641
            |||||||||||||||||
Sbjct  407  CTCCAGACAAGTTTTAA  423



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28477818999


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5