BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G30380.1
Length=1558
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323036 jgi|Araly1|323036|fgenesh1_pm.C_scaffold_5000580 1175 0.0
> Ahg323036 jgi|Araly1|323036|fgenesh1_pm.C_scaffold_5000580
Length=1092
Score = 1175 bits (636), Expect = 0.0
Identities = 795/870 (91%), Gaps = 17/870 (2%)
Strand=Plus/Plus
Query 554 GCTTCACTTACGCTTC-TTTATTCTCATGGTAACGCCGCGGATCTTGGTCAGATGTTCGA 612
|||||||| ||||||| |||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 167 GCTTCACTAACGCTTCTTTTATTCTCACGGTAACGCCGCCGATCTTGGTCAGATGTTTGA 226
Query 613 GCTTTTCTCCGAGCTTAGCCTCCATCTTCGTGTTAACTTAATTGGGTATGATTATTCGGG 672
||| ||||||||||| ||||| || || || | |||||||||||||||||
Sbjct 227 GCTCTTCTCCGAGCTCAGCCT---TCATC---TT--C------GGGTATGATTATTCGGG 272
Query 673 TTATGGGAGATCTTCAGGGAAGCCTAGTGAGCAGAACACGTATAGCGATATAGAAGCAGT 732
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 TTACGGGAGGTCTTCAGGGAAGCCTAGTGAGCAGAACACGTATAGCGATATAGAAGCAGT 332
Query 733 GTATAGATGCTTGGAAGAGAAGTATGGTGTGAAGGAACAAGATGTTATCTTATATGGACA 792
||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 333 GTATAGATGTTTGGAGGAGAAATATGGTGTGAAGGAACAGGATGTTATCTTATATGGACA 392
Query 793 ATCTGTAGGAAGCGGCCCGACTTTAGAATTGGCTTCTCGGTTACCTAACCTACGAGCCGT 852
||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 393 ATCTGTAGGAAGCGGTCCGACTTTGGAATTGGCTTCTCGGTTACCTAACCTCCGAGCTGT 452
Query 853 GGTTCTTCATAGCGCTATTGCTTCCGGACTTAGAGTCATGTACCCTGTTAAACGAACTTA 912
||||||||||| || ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 453 TGTTCTTCATAGTGCAATTGCTTCCGGTCTTAGAGTCATGTACCCTGTCAAACGAACTTA 512
Query 913 CTGGTTCGACATTTACAAGAATGTCGAGAAGATATCGTTTGTCAAATGTCCGGTTTTAGT 972
|||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 513 CTGGTTTGACATTTACAAGAATATCGAGAAGATATCTTTTGTCAAATGTCCGGTTTTAGT 572
Query 973 AATACACGGAACATCAGATGATGTTGTTAATTGGTCTCATGGGAAGCAATTATTTGAGCT 1032
| | ||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 573 AGTTCACGGAACATCAGATGATGTTGTAAATTGGTCTCATGGGAAGCAATTATTCGATCT 632
Query 1033 ATGTAAAGAAAAATATGAACCGCTTTGGATCAAAGGAGGGAACCATTGTGATTTAGAGTT 1092
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 GTGTAAAGAAAAATATGAACCGCTTTGGATCAAAGGAGGGAACCATTGTGATTTAGAGTT 692
Query 1093 ATATCCGCAATACATAAAGCATCTAAGAAAATTTGTATCGGCGATTGAAAAGTCGCCG-A 1151
||| || ||||||||||||||||| || ||||||||||| ||||||||||| ||||| |
Sbjct 693 ATACCCACAATACATAAAGCATCTGAGGAAATTTGTATCAGCGATTGAAAAATCGCCTCA 752
Query 1152 TACTTAGAAATGGACCGGTGCCACTAACAGAGAAGGCAAGGAGTAGTACGGATATTAGAG 1211
| |||||||| ||||| ||||||| |||||||||||| ||||| ||||| ||||||||||
Sbjct 753 T-CTTAGAAACGGACCTGTGCCACAAACAGAGAAGGCGAGGAGCAGTACAGATATTAGAG 811
Query 1212 AACCTGCAAGACCAAGCACAGATCAGAGAGATAAATCAAGAACAAGCACGGATCAAAGAG 1271
||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||
Sbjct 812 AACCTGCAAGACCAAGCACAGATCAAAGAGAGAAATCAAGGACAAGCACAGATCAAAGAG 871
Query 1272 AGATGCCGAAGCTGAGTACAGATATAGCGAGAGCAAGCGTTGATAAGAGGGAGAGAACGA 1331
|||||||||||||||||||||||| |||||||||||||||||||||| | |||||||| |
Sbjct 872 AGATGCCGAAGCTGAGTACAGATAAAGCGAGAGCAAGCGTTGATAAGCGAGAGAGAACAA 931
Query 1332 GAAGAAGCGTTGATGGGACTGAGAAACCGAGTAATTCCGCGGAACAGCAACTAGTACAAC 1391
||| |||||||||||||||||| ||||| ||||||||| |||||||||||||| ||||||
Sbjct 932 GAAAAAGCGTTGATGGGACTGATAAACCAAGTAATTCCACGGAACAGCAACTACTACAAC 991
Query 1392 CAGAGAAAGGAAGGAATAGCATTGACAGGT 1421
|||||||||| |||||||||||||||||||
Sbjct 992 CAGAGAAAGGGAGGAATAGCATTGACAGGT 1021
Score = 268 bits (145), Expect = 7e-71
Identities = 160/167 (96%), Gaps = 1/167 (1%)
Strand=Plus/Plus
Query 359 ATGGGAGCGGTGACGTCATCAATGGCGGCGAAGTTTGCGTTTTTCCCGCCAAATCCGCCG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAGCGGTGACGTCATCAATGGCGGCGAAGTTTGCGTTTTTCCCGCCAAATCCGCCG 60
Query 419 TCGTACGGCGTAGAAGTGGTGGAAGGAAAGCTGAGGCTGATTGGTGTAGAGAACGTGAAG 478
||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 61 TCGTACGGCGTCGAAGTGGTGGAAGGAAAGCTAAAGCTGATTGGTGTAGAGAACGTGAAG 120
Query 479 GAGAATGTTGAA-GTATTGAAGCTGAAGACGAAGAGAGGTAATCAGG 524
|| || |||||| |||||||||||||||||||||||||| |||||||
Sbjct 121 GATAACGTTGAAAGTATTGAAGCTGAAGACGAAGAGAGGGAATCAGG 167
Score = 143 bits (77), Expect = 4e-33
Identities = 77/77 (100%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 1482 ACAGGTTTGGGGAGATGATAAGATCAGTAGGATTTTGCAACATAGATTGTTTCAAGCCTA 1541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 ACAGGTTTGGGGAGATGATAAGATCAGTAGGATTTTGCAACATAGATTGTTTCAAGCCTA 1075
Query 1542 CAGCAACAGCTAAGTGA 1558
|||||||||||||||||
Sbjct 1076 CAGCAACAGCTAAGTGA 1092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58354255340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5