BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G30380.1 Length=1558 Score E Sequences producing significant alignments: (Bits) Value Ahg323036 jgi|Araly1|323036|fgenesh1_pm.C_scaffold_5000580 1175 0.0 > Ahg323036 jgi|Araly1|323036|fgenesh1_pm.C_scaffold_5000580 Length=1092 Score = 1175 bits (636), Expect = 0.0 Identities = 795/870 (91%), Gaps = 17/870 (2%) Strand=Plus/Plus Query 554 GCTTCACTTACGCTTC-TTTATTCTCATGGTAACGCCGCGGATCTTGGTCAGATGTTCGA 612 |||||||| ||||||| |||||||||| ||||||||||| ||||||||||||||||| || Sbjct 167 GCTTCACTAACGCTTCTTTTATTCTCACGGTAACGCCGCCGATCTTGGTCAGATGTTTGA 226 Query 613 GCTTTTCTCCGAGCTTAGCCTCCATCTTCGTGTTAACTTAATTGGGTATGATTATTCGGG 672 ||| ||||||||||| ||||| || || || | ||||||||||||||||| Sbjct 227 GCTCTTCTCCGAGCTCAGCCT---TCATC---TT--C------GGGTATGATTATTCGGG 272 Query 673 TTATGGGAGATCTTCAGGGAAGCCTAGTGAGCAGAACACGTATAGCGATATAGAAGCAGT 732 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 273 TTACGGGAGGTCTTCAGGGAAGCCTAGTGAGCAGAACACGTATAGCGATATAGAAGCAGT 332 Query 733 GTATAGATGCTTGGAAGAGAAGTATGGTGTGAAGGAACAAGATGTTATCTTATATGGACA 792 ||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 333 GTATAGATGTTTGGAGGAGAAATATGGTGTGAAGGAACAGGATGTTATCTTATATGGACA 392 Query 793 ATCTGTAGGAAGCGGCCCGACTTTAGAATTGGCTTCTCGGTTACCTAACCTACGAGCCGT 852 ||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| || Sbjct 393 ATCTGTAGGAAGCGGTCCGACTTTGGAATTGGCTTCTCGGTTACCTAACCTCCGAGCTGT 452 Query 853 GGTTCTTCATAGCGCTATTGCTTCCGGACTTAGAGTCATGTACCCTGTTAAACGAACTTA 912 ||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 453 TGTTCTTCATAGTGCAATTGCTTCCGGTCTTAGAGTCATGTACCCTGTCAAACGAACTTA 512 Query 913 CTGGTTCGACATTTACAAGAATGTCGAGAAGATATCGTTTGTCAAATGTCCGGTTTTAGT 972 |||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 513 CTGGTTTGACATTTACAAGAATATCGAGAAGATATCTTTTGTCAAATGTCCGGTTTTAGT 572 Query 973 AATACACGGAACATCAGATGATGTTGTTAATTGGTCTCATGGGAAGCAATTATTTGAGCT 1032 | | ||||||||||||||||||||||| |||||||||||||||||||||||||| || || Sbjct 573 AGTTCACGGAACATCAGATGATGTTGTAAATTGGTCTCATGGGAAGCAATTATTCGATCT 632 Query 1033 ATGTAAAGAAAAATATGAACCGCTTTGGATCAAAGGAGGGAACCATTGTGATTTAGAGTT 1092 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 633 GTGTAAAGAAAAATATGAACCGCTTTGGATCAAAGGAGGGAACCATTGTGATTTAGAGTT 692 Query 1093 ATATCCGCAATACATAAAGCATCTAAGAAAATTTGTATCGGCGATTGAAAAGTCGCCG-A 1151 ||| || ||||||||||||||||| || ||||||||||| ||||||||||| ||||| | Sbjct 693 ATACCCACAATACATAAAGCATCTGAGGAAATTTGTATCAGCGATTGAAAAATCGCCTCA 752 Query 1152 TACTTAGAAATGGACCGGTGCCACTAACAGAGAAGGCAAGGAGTAGTACGGATATTAGAG 1211 | |||||||| ||||| ||||||| |||||||||||| ||||| ||||| |||||||||| Sbjct 753 T-CTTAGAAACGGACCTGTGCCACAAACAGAGAAGGCGAGGAGCAGTACAGATATTAGAG 811 Query 1212 AACCTGCAAGACCAAGCACAGATCAGAGAGATAAATCAAGAACAAGCACGGATCAAAGAG 1271 ||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||| Sbjct 812 AACCTGCAAGACCAAGCACAGATCAAAGAGAGAAATCAAGGACAAGCACAGATCAAAGAG 871 Query 1272 AGATGCCGAAGCTGAGTACAGATATAGCGAGAGCAAGCGTTGATAAGAGGGAGAGAACGA 1331 |||||||||||||||||||||||| |||||||||||||||||||||| | |||||||| | Sbjct 872 AGATGCCGAAGCTGAGTACAGATAAAGCGAGAGCAAGCGTTGATAAGCGAGAGAGAACAA 931 Query 1332 GAAGAAGCGTTGATGGGACTGAGAAACCGAGTAATTCCGCGGAACAGCAACTAGTACAAC 1391 ||| |||||||||||||||||| ||||| ||||||||| |||||||||||||| |||||| Sbjct 932 GAAAAAGCGTTGATGGGACTGATAAACCAAGTAATTCCACGGAACAGCAACTACTACAAC 991 Query 1392 CAGAGAAAGGAAGGAATAGCATTGACAGGT 1421 |||||||||| ||||||||||||||||||| Sbjct 992 CAGAGAAAGGGAGGAATAGCATTGACAGGT 1021 Score = 268 bits (145), Expect = 7e-71 Identities = 160/167 (96%), Gaps = 1/167 (1%) Strand=Plus/Plus Query 359 ATGGGAGCGGTGACGTCATCAATGGCGGCGAAGTTTGCGTTTTTCCCGCCAAATCCGCCG 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGGAGCGGTGACGTCATCAATGGCGGCGAAGTTTGCGTTTTTCCCGCCAAATCCGCCG 60 Query 419 TCGTACGGCGTAGAAGTGGTGGAAGGAAAGCTGAGGCTGATTGGTGTAGAGAACGTGAAG 478 ||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct 61 TCGTACGGCGTCGAAGTGGTGGAAGGAAAGCTAAAGCTGATTGGTGTAGAGAACGTGAAG 120 Query 479 GAGAATGTTGAA-GTATTGAAGCTGAAGACGAAGAGAGGTAATCAGG 524 || || |||||| |||||||||||||||||||||||||| ||||||| Sbjct 121 GATAACGTTGAAAGTATTGAAGCTGAAGACGAAGAGAGGGAATCAGG 167 Score = 143 bits (77), Expect = 4e-33 Identities = 77/77 (100%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1482 ACAGGTTTGGGGAGATGATAAGATCAGTAGGATTTTGCAACATAGATTGTTTCAAGCCTA 1541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1016 ACAGGTTTGGGGAGATGATAAGATCAGTAGGATTTTGCAACATAGATTGTTTCAAGCCTA 1075 Query 1542 CAGCAACAGCTAAGTGA 1558 ||||||||||||||||| Sbjct 1076 CAGCAACAGCTAAGTGA 1092 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58354255340 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5