BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G30390.1
Length=1937
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896967 jgi|Araly1|896967|Al_scaffold_0005_933 2206 0.0
Ahg356106 jgi|Araly1|356106|fgenesh1_pg.C_scaffold_7003279 992 0.0
> Ahg896967 jgi|Araly1|896967|Al_scaffold_0005_933
Length=1377
Score = 2206 bits (1194), Expect = 0.0
Identities = 1314/1373 (96%), Gaps = 3/1373 (0%)
Strand=Plus/Plus
Query 290 TTGGAGATGTTGCTCCAATTCCAAGGAGGAACAGTTCTACTTGCTCTAATGATATCGCTG 349
|||||||||||||||||||||||||||||||||| | | ||||| ||||||| || | ||
Sbjct 8 TTGGAGATGTTGCTCCAATTCCAAGGAGGAACAG-T-T-CTTGCGCTAATGAAATTGTTG 64
Query 350 CTCCGTTATTACCAGAGTGTCATGGAGATGAAGTTGCTCATGATGAATTCAATGGAGCTT 409
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 65 CTCCGTTATTACCAGAGTGTCATGGAGATGAAGTTGCTTATGATGAATTCAATGGAGCTT 124
Query 410 CTTTTAGTGGCGCGGTTTTTAACCTCGCCACGACTATAATTGGTGCTGGTATCATGGCTT 469
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 125 CTTTTAGTGGCGCGGTTTTTAATCTCGCTACGACTATAATTGGTGCTGGTATCATGGCTT 184
Query 470 TGCCTGCTACAATGAAGATTCTTGGACTTGGACTTGGAATCACGATGATTGTTGTTATGG 529
|||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 185 TGCCGGCTACGATGAAGATTCTTGGACTTGGACTTGGAATCACTATGATTGTTGTTATGG 244
Query 530 CTTTCTTGACTGATGCGTCGATTGAGTTCTTGCTTAGGTTTAGTAAAGCTGGGAAGAATC 589
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 CTTTCTTGACTGATGCATCGATTGAGTTCTTGCTTAGGTTTAGTAAAGCTGGGAAGAATC 304
Query 590 GATCTTACGGTGGTTTAATGGGTGGTTCTTTTGGTAATCCTGGAAGGATTTTGCTTCAAG 649
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 305 GATCTTACGGTGGTTTAATGGGTGGTTCTTTTGGTAATCCCGGAAGGATTTTGCTTCAAG 364
Query 650 TCGCGGTTTTAGTTAATAACATCGGTGTTTTGATTGTATACATGATCATTATAGGTGATG 709
|||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 365 TCGCGGTTTTCGTTAACAACATCGGTGTTTTGATTGTTTACATGATCATCATAGGTGATG 424
Query 710 TGTTGGCTGGAAAGACGGAAGATGGTATCCATCATTTCGGTGTTCTCGAAGGATGGTTTG 769
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct 425 TGTTGGCTGGAAAGACGGAAGATGGAATCCATCATTTCGGTGTTCTTGAAGGATGGTTCG 484
Query 770 GTCACCATTGGTGGAATGGAAGAGCTGCTATTCTTCTGATTACTACTCTTGGTGTGTTTG 829
|||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 485 GTCACCATTGGTGGAACGGAAGAGCTGCTATTCTTCTTATTACAACTCTTGGTGTGTTTG 544
Query 830 CTCCATTGGCTTGCTTCAAGCGAATCGATTCTTTGAAATTTACATCGGCCTTATCCGTGG 889
||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 545 CTCCATTAGCTTGCTTCAAGCGAATTGATTCTTTGAAATTTACATCTGCCTTATCCGTGG 604
Query 890 CTCTGGCGGTTGTGTTTCTCATTATTACTGCGGGAATTTCAATTATGAAGTTGATCAGTG 949
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 605 CTCTGGCGGTTGTGTTTCTCATTATTACAGCGGGAATTTCGATTATGAAGTTGATCAGTG 664
Query 950 GCGGTGTGGCGATGCCAAGATTGTTACCAGATGTTACTGACTTAACATCTTTCTGGAATC 1009
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 665 GCGGTGTGGCGATGCCAAGATTGCTACCAGATGTTACCGACTTAACATCTTTCTGGAATC 724
Query 1010 TCTTCACAGTCGTACCTGTTCTTGTCACAGCATTCATTTGCCATTACAATGTTCACAGTA 1069
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 725 TCTTCACAGTTGTACCCGTTCTTGTCACAGCATTCATTTGCCATTACAATGTTCACAGCA 784
Query 1070 TACAGAACGAGCTCGAAGACCCCTCTCAGATAAGACCTGTTGTTCGATCAGCACTTATGC 1129
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 785 TACAGAACGAGCTCGAAGACGCCTCTCAGATAAGACCTGTTGTCCGATCAGCACTTATGC 844
Query 1130 TCTGCTCATCTGTTTACATAATGACAAGTATTTTCGGGTTCCTCTTGTTTGGTGATGATA 1189
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 845 TCTGCTCATCTGTTTACATAATGACAAGCATTTTCGGGTTCCTCTTGTTTGGTGATGATA 904
Query 1190 CTCTTGATGATGTCCTTGCAAACTTTGACACTGATCTTGGAATCCCTTTTGGTTCTATCC 1249
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 905 CTCTTGATGATGTCCTTGCAAACTTTGACACCGACCTTGGAATCCCTTTTGGTTCTATCC 964
Query 1250 TTAATGATGCGGTTCGAGTTAGCTACGCGCTTCATTTGATGCTCGTGTTCCCGATTGTTT 1309
|||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||
Sbjct 965 TTAATGATGCGGTTCGAGTTAGCTACGCACTTCATCTGATGCTCGTGTTCCCAATTGTTT 1024
Query 1310 TCTACCCTCTTCGGATTAACATTGACGGGCTCTTGTTCCCTTCCGCTCGATCATTATCTA 1369
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1025 TCTACCCTCTGCGGATTAACATTGACGGGCTCTTGTTCCCTTCCGCCCGATCATTATCTA 1084
Query 1370 CCTCAAATGTGAGGTTCGGTTGCCTCACTGCCGGTCTCATCTCTGTAATCTTCTTGGGTG 1429
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1085 CCTCAAATGTGAGGTTCGGTTGCCTCACTGCCGGTCTCATCTCTGTAGTCTTCTTGGGTG 1144
Query 1430 CAAACTTCATCCCAAGCATTTGGGATGCTTTCCAATTCACTGGAGCAACCGCCGCTGTTT 1489
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1145 CAAACTTCATCCCGAGCATTTGGGATGCTTTCCAATTCACTGGAGCAACTGCCGCTGTTT 1204
Query 1490 GTCTCGGCTTCATCTTCCCAGCTTCTATCATACTAAAGGATCGTCATGACAAAGCAACAA 1549
||||||||||||||||||| || ||||| |||||||||||||| |||| |||||||||||
Sbjct 1205 GTCTCGGCTTCATCTTCCCCGCGTCTATTATACTAAAGGATCGGCATGGCAAAGCAACAA 1264
Query 1550 ACAGGGACACAACCTTAGCTATTTTCATGATTGTTCTTGCGGTATTGTCCAATGCAATCG 1609
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1265 ACAGGGACACAACCTTAGCCATTTTCATGATCGTTCTTGCGGTATTGTCCAATGCAATCG 1324
Query 1610 CCATTTACAGCGATGCTTATGCGCTATTCAAGAAGAACGCTCCTCGTGAGTAA 1662
|||||||||||||||| ||||| |||||||||| |||||| ||||||||||||
Sbjct 1325 CCATTTACAGCGATGCCTATGCACTATTCAAGAGGAACGCGCCTCGTGAGTAA 1377
> Ahg356106 jgi|Araly1|356106|fgenesh1_pg.C_scaffold_7003279
Length=1371
Score = 992 bits (537), Expect = 0.0
Identities = 1047/1287 (81%), Gaps = 60/1287 (5%)
Strand=Plus/Plus
Query 394 GAATTCAATGGAGCTTCTTTTAGTGGCGCGGTTTTTAACCTCGCCACGACTATAATTGGT 453
|||||||| |||||||| |||||||| |||||||| || ||||| || || || || |||
Sbjct 91 GAATTCAACGGAGCTTCGTTTAGTGGAGCGGTTTTCAATCTCGCTACAACGATCATCGGT 150
Query 454 GCTGGTATCATGGCTTTGCCTGCTACAATGAAGATTCTTGGACTTGGACTTGGAATCACG 513
|||||||| ||||| |||||||| || |||||||| || || ||| | |||||| ||
Sbjct 151 GCTGGTATAATGGCATTGCCTGCGACGATGAAGATCCTCGGTCTTATCCCCGGAATCGCG 210
Query 514 ATGATTGTTGTTATGGCTTTCTTGACTGATGCGTCGATTGAGTTCTTGCTTAGGTTTAGT 573
||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 211 ATGATTGTTCTTATGGCTTTCTTGACCGATGCTTCGATTGAGTTCTTGCTTAGGTTTAGT 270
Query 574 AAAGC-T-GGGAA-GAATCGATCTTACGGTGGT-TTAATGGGTGGTTCTTTTGGT-AATC 628
|| | | ||||| || ||||||| |||||| || |||| || |||||||||| |||
Sbjct 271 -AA-CATAGGGAATCAA-AGATCTTATGGTGGTGTT-ATGGATGATTCTTTTGGTAAAT- 325
Query 629 CTGGAAGGATTTTGCTT-CAAGTCGCGGTT-TTAGTTAATAACATCGGTGTTTTGATTGT 686
||||||||||||| || ||||| || || || |||| ||||||||||||||||| ||
Sbjct 326 GTGGAAGGATTTTG-TTACAAGTTTCGATTCTT-GTTAGCAACATCGGTGTTTTGATCGT 383
Query 687 ATACATGATCATTATAGGTGATGTGTTGGCTGGAAAGACGGAAGATGGTATCCATCATTT 746
|| ||||||||||| |||||||| |||||||| |||| ||| |||| |||||||| |
Sbjct 384 TTATATGATCATTATTGGTGATGTTTTGGCTGGTAAGAATGAATATGGAATCCATCA-TG 442
Query 747 C-GGTGTTCTCGAAGGATGGTTT-GG-TCACCATTGGTGGAATGGAAGAGCTGCTATTCT 803
| ||| | || |||||||||||| || | | ||||||||||| ||||| || | ||||
Sbjct 443 CTGGTATGCTTGAAGGATGGTTTGGGATTA--ATTGGTGGAATAGAAGAACTTTTGTTCT 500
Query 804 TCT-GATTACTACTCTTGGTGTGTTTGCTCCATTGGCTTGCTTCAAGCGAATCGATTCTT 862
||| | |||||||||| |||||||||||||||| ||||||||||||| || |||||||
Sbjct 501 TCTCG-TTACTACTCTCATTGTGTTTGCTCCATTGACTTGCTTCAAGCGGATTGATTCTT 559
Query 863 TGAAATTTACATCGGCCT-TATCCGTGGCTCTGGCGGTTGTGTTTCTCATTATTACTGCG 921
||| ||| ||||| | || |||| || ||| | |||||||| ||||| | |||||||||
Sbjct 560 TGAGATTCACATCTG-CTGTATCGGTTGCTTTAGCGGTTGTTTTTCTTGTCATTACTGCG 618
Query 922 GGAATTTCAATTATGAAGTTGATCAGTGGCGGTGTGGCGATGCCAAGA-TTGTTACC-AG 979
|||||| | || | ||| || | | || ||| || |||||||||| || ||||| |
Sbjct 619 GGAATTACTATCGTAAAGCTGTTTACTGATGGTTTGATGATGCCAAGACTT-TTACCTA- 676
Query 980 ATGTTACTGACTTAACATC-TTTCTGGAATCTCTTCACAGTCGTACCTGTTCTTGTCACA 1038
|||| |||||||| | || || ||||| |||||||| || || ||||| ||||||| |
Sbjct 677 ATGTCACTGACTTGTCGTCGGTT-TGGAAACTCTTCACGGTTGTTCCTGTGCTTGTCA-A 734
Query 1039 -GCATTCATTTGCCATTACAATGTTCACAGTATACAGAACGAGCTCGAAGACCCCTCTCA 1097
|||| |||||| |||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 735 TGCATACATTTGTCATTACAATGTTCACAGTATACAGAACGAGCTTGAAGATCCTTCTCG 794
Query 1098 GATAAGACCTGTTGTTCGATCAGCACTTATGCTCTGCTCATCTGTTTACATAATGACAAG 1157
||||| ||| |||||||||||||||||| | | || || ||||||||| | ||||| ||
Sbjct 795 GATAAAACCAGTTGTTCGATCAGCACTTGCGATGTGTTCTTCTGTTTACGTTATGACGAG 854
Query 1158 TATT-TTCGGGTTCCTCTTGTTTGGTGATGATACTCTTGATGATGTCCTTGCAAACTTTG 1216
|| ||||| | ||| || || ||||||| |||||| |||||||| |||||||||||||
Sbjct 855 C-TTATTCGGATACCTTTTATTCGGTGATGCTACTCTCGATGATGTTCTTGCAAACTTTG 913
Query 1217 ACACTGATCTTGGAATCCCTTTTGGTTCTATCCTTAATGATGCGGTTCGAGTTAGCTACG 1276
|||| ||||||||||||||||||||||| | ||||||||||| || || ||||||| |
Sbjct 914 ACACGGATCTTGGAATCCCTTTTGGTTCGGTTCTTAATGATGCAGTGAGATTTAGCTATG 973
Query 1277 C-GCTTCATTTGATGCTCGTGTTCCC-GATTGTTTTCTACCCTCTTCGGATTAACATTGA 1334
| ||| ||| | ||||| |||||||| | |||| ||||| ||||| ||||||||||||||
Sbjct 974 CAGCT-CATCTCATGCTTGTGTTCCCTG-TTGTCTTCTATCCTCTGCGGATTAACATTGA 1031
Query 1335 CGGGCTC-TTGTTCCCTTCCGCTCGATCA-TTATCTACCTCAAA-TGTGAGGTTCGGTT- 1390
||| ||| || |||| | | |||| | || ||| || |||| | ||| | ||||
Sbjct 1032 CGGTCTCATTTTTCC-TACGGCTCCACCACTTA-CTTCCTCTGGGTCTGATCTGAGGTTT 1089
Query 1391 G-C-CT--CACTGCCGGTCTCATCTCTGTAATCTTCTTGGGTGCAAACTTCATCCCAAGC 1446
| | || |||||| ||||||||| |||||||||||||||| ||||||||||| ||||||
Sbjct 1090 GGCTCTATCACTGCTGGTCTCATCGCTGTAATCTTCTTGGGAGCAAACTTCATTCCAAGC 1149
Query 1447 ATTTGGGATGCTTTCCAATTCACTGGAGCAACCGCCGCTGTTTGTC-TCGGCTTCATCTT 1505
||||||||||||||||||||||||||||||||||| ||||| || | |||| ||||| ||
Sbjct 1150 ATTTGGGATGCTTTCCAATTCACTGGAGCAACCGCTGCTGTCTG-CATCGGTTTCATATT 1208
Query 1506 CCCAGCTTCTATCATACTA-AAGGATCGTCATGACAAAGCAACAAA-CAGGGACACA-AC 1562
||| ||| || | || || |||||||||||| || |||||||||| | |||||| | ||
Sbjct 1209 CCCTGCTGCTGTTAT-CTTGAAGGATCGTCATAACCAAGCAACAAAGC-GGGACA-AGAC 1265
Query 1563 CT-TAGCTATTTTCATGATTGTTCTTGCGGTATTGTCCAATGCAATCGCCATTTACAGCG 1621
| |||| |||| |||||| || |||||||| || ||||| ||||||||||||||||| |
Sbjct 1266 -TATAGCCATTTGCATGATCGTCCTTGCGGTTTTCTCCAACGCAATCGCCATTTACAGTG 1324
Query 1622 ATGCTTATGCGCT-ATTCAAGAAGAAC 1647
| || || || || |||||||||||||
Sbjct 1325 ACGCCTACGC-CTTATTCAAGAAGAAC 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72790458195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5