BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G30460.1

Length=667
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484746 jgi|Araly1|484746|fgenesh2_kg.5__738__AT3G30460.1          632    0.0  


> Ahg484746 jgi|Araly1|484746|fgenesh2_kg.5__738__AT3G30460.1
Length=499

 Score =  632 bits (342),  Expect = 0.0
 Identities = 413/446 (93%), Gaps = 9/446 (2%)
 Strand=Plus/Plus

Query  49   aaaaaaaaaTCAATGGCTGAGGAGTTTCATCTTCCTCTAAACCTCACCGAACCAGACCAA  108
            |||||||||||||||||||||||||||||||||||| ||||||||||||||  ||| |||
Sbjct  27   AAAAAAAAATCAATGGCTGAGGAGTTTCATCTTCCTTTAAACCTCACCGAAATAGATCAA  86

Query  109  ACTCCGACCGAAGAAGATTTCGAAGCAGACACTACATTAATTGACGACGAATACCTCCGT  168
            | ||||||||||||||| ||||||||||||||||| || || ||||||||||||||||||
Sbjct  87   ATTCCGACCGAAGAAGACTTCGAAGCAGACACTACTTTCATCGACGACGAATACCTCCGT  146

Query  169  TACCTCCACTACTTGGATTCACGGAGCAATCATGGAGTCAACACGTTTGGATCTTACGAT  228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct  147  TACCTCCACTACTTGGATTCACGGAGCAATCATGGAGTCAACACGTTTGGATCGTACGAC  206

Query  229  GAAATCTTTGGTCTAGTTCTCGGTAATTCATCCTC--TTGTACGCGGTGGCTTAACGCAG  286
            |||||||| ||| ||||||||||||||||||| ||  ||  | ||| |  |||||||| |
Sbjct  207  GAAATCTTCGGTTTAGTTCTCGGTAATTCATCTTCGATTC-A-GCG-T--CTTAACGC-G  260

Query  287  G-GGAGGAACTTCCGGTGGTGGAGTTTACGGCTGAGGAAATGATGGAGAGAGGTTTAGTG  345
            | |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct  261  GCGGAGGAACTTCCGGTGGTTGAGTTTACGGCTGAGGAAATGATGGAGAGAGGTTTGGTG  320

Query  346  GTTTGTGCTATATGTAGAGAGGAGCTTGCTGCTAATGAGAGGCTCTCAGAGCTTCCTTGT  405
            |||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||
Sbjct  321  GTTTGTGCTATATGTAGAGAGGAGCTCGCTGCTAATGAGAGACTCTCTGAGCTTCCATGT  380

Query  406  CGGCATTATTACCATAAAGAGTGTATCTCGAATTGGTTGAGTAATCGGAACACTTGTCCG  465
            |||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct  381  CGGCATTATTACCATAAAAATTGTATCTCGAATTGGTTGAGTAATCGGAACACGTGTCCG  440

Query  466  CTTTGTCGTCATAACGTGGAATTACC  491
            ||||||||||||||||||||||||||
Sbjct  441  CTTTGTCGTCATAACGTGGAATTACC  466



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24474912714


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5