BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G30530.1
Length=522
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936841 jgi|Araly1|936841|scaffold_501032.1 798 0.0
> Ahg936841 jgi|Araly1|936841|scaffold_501032.1
Length=559
Score = 798 bits (432), Expect = 0.0
Identities = 493/522 (94%), Gaps = 5/522 (1%)
Strand=Plus/Plus
Query 1 ATGCAGCCGCAAACAGACGTTTTCAGCCTCCATAACTACCTAAACTCATCGATACTGCAG 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 21 ATGCAGCCGCAAACAGACGTTTTCAGCCTCCATAACTACCTAAACTCCTCGAT--TTC-C 77
Query 61 TCTCCGTATCCTTCTAATTTCCCGATATCTACGCCATTTCCAACCAACGGTCAAAACCCG 120
||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 78 TCTCCATATCCTTCTAATTTCCCGATATCTACGCCATTTCCAACCAACAGCCAAAACCCG 137
Query 121 TACCT-CCTCTACGGATTCCAAAGCCCTACAAACAATCCACAATCCATGAGCCTAAGCAG 179
|| || ||| ||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 138 TA-CTCCCTTTACGGATTCCAAAGCCCTACATATAATCCACAATCCATGAGCCTAAGCAG 196
Query 180 CAACAACTCAACATCAGATGAAGCAGAAGAGCAGCAGACGAACAACAATATAATCAACGA 239
|||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||
Sbjct 197 CAACAACTCAACATCAGACGAAGCAGAAGAGCAGCAGATGGACAACAATATAATCAACGA 256
Query 240 GCGGAAGCAGAGAAGGATGATTTCAAACCGAGAATCCGCAAGGAGATCGCGTATGAGGAA 299
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 257 GCGGAAGCAGAGAAGGATGATTTCAAACAGAGAATCCGCAAGGAGATCGCGTATGAGGAA 316
Query 300 GCAAAGACACCTTGACGAGCTTTGGTCACAAGTGATGTGGTTAAGGATCGAGAATCATCA 359
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 317 GCAAAGACACCTTGACGAGCTTTGGTCACAAGTTATGTGGTTAAGGATCGAGAATCATCA 376
Query 360 GTTGCTTGATAAGCTTAACAATCTCTCTGAGTCTCACGACAAGGTTCTTCAAGAGAATGC 419
|||||| ||||||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 377 GTTGCTAGATAAGCTTAAAAATCTCTCTGAGTCTCACGAAAAAGTTCTTCAAGAGAATGC 436
Query 420 TCAGCTTAAAGAAGAAACATTTGAGCTTAAGCAAGTGATCAGCGATATGCAAATTCAAAG 479
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||
Sbjct 437 TCAGCTTAAAGAAGAAACATCTGAGCTTAAGCAAGTGATCAGTGATATGCAAATCCAAAG 496
Query 480 CCCTTTCTCTTGCTTTAGAGACGATATAATCCCCATTGAATA 521
||||||||||||||| || ||||||||||| |||||||||||
Sbjct 497 CCCTTTCTCTTGCTTCAGGGACGATATAATACCCATTGAATA 538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19001483322
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5