BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G30714.1
Length=393
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484465 jgi|Araly1|484465|fgenesh2_kg.5__457__AT3G26870.1 571 1e-162
Ahg932605 jgi|Araly1|932605|scaffold_400593.1 145 3e-34
> Ahg484465 jgi|Araly1|484465|fgenesh2_kg.5__457__AT3G26870.1
Length=393
Score = 571 bits (309), Expect = 1e-162
Identities = 366/394 (93%), Gaps = 2/394 (1%)
Strand=Plus/Plus
Query 1 ATGAAATATTTCACAATTTTCGTATTTGTTTTTAGTCTTTGCATGCTTGGCCATGTATCC 60
|||||| || ||||||||||| ||||||||||||| ||||||| ||||||||||||||||
Sbjct 1 ATGAAAAATCTCACAATTTTCATATTTGTTTTTAGCCTTTGCACGCTTGGCCATGTATCC 60
Query 61 GGCGCCGGAATTAGAATCGTGAACGAACTCAAAAATAAGAAAACTCTTTGGATGAGGTGC 120
|| |||||||| |||||||| ||||||||||||| || ||||||||| |||||||||||
Sbjct 61 GGTGCCGGAATCAGAATCGTAAACGAACTCAAAAGTAGGAAAACTCTCTGGATGAGGTGT 120
Query 121 TATTCCAAAAATGACGTACTTGGTCCAACAGTAATACCAAATGGAGGACAATTTAC-AGA 179
||||||||| |||||||||| |||||||| |||||||||||||||||||| ||||| | |
Sbjct 121 TATTCCAAAGATGACGTACTAGGTCCAACGGTAATACCAAATGGAGGACAGTTTACTA-A 179
Query 180 TTATTTCTTTCATAATTTATTTGGTACGACACGTTTTATGTGTACCTTAAAACAAGGGCC 239
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 180 TTATTTCTTTCATAATTTATTTGGTACGATGCGTTTTATGTGTACTTTAAAACAAGGGCC 239
Query 240 TGGATTTAGTCACAGTCAGAGCTTTAGAGCATTTAAAAATTCTGGCTTATGGGATTGGAG 299
|||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 240 TGGATTTAGTCACAGTGTGAGTTTTAGAGCATTTAAAAATTCTGGTTTATGGGATTGGAG 299
Query 300 AGCTAGAGAAGATGGGATCTATTTAAGAAGAATCTATAAGGCCAAATTTGATGACGGTGC 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 AGCCAGAGAAGATGGGATCTATTTAAGAAGAATCTATAAGGCCAAATTTGATGACGGCGC 359
Query 360 AGACAATCTGCATAAAGAGCAAAGTTGGATATAG 393
||||||||||||||||||||||| ||||||||||
Sbjct 360 AGACAATCTGCATAAAGAGCAAAATTGGATATAG 393
> Ahg932605 jgi|Araly1|932605|scaffold_400593.1
Length=454
Score = 145 bits (78), Expect = 3e-34
Identities = 184/232 (79%), Gaps = 19/232 (8%)
Strand=Plus/Plus
Query 18 TTTCGTATTTGTTTTTAGTCTTTGCATGCTTGGCCATGTATCCGGCGCCGGAATTAGAAT 77
|||| |||| ||||| |||||||||||||||||||||||||||||| | ||||| || ||
Sbjct 40 TTTC-TATTCGTTTTCAGTCTTTGCATGCTTGGCCATGTATCCGGCTCTGGAATCAGGAT 98
Query 78 CGTGAACGAACTCAAAAAT-AAGAAAACT-CTTTGGATGAGGTGCTATTCCAAAAATGAC 135
| ||||||||||||| | |||||| || || ||||| || || ||||||||| ||||
Sbjct 99 AGCGAACGAACTCAAAT-TCAAGAAA-CTTCTCTGGATTAGATGTTATTCCAAAGATGAT 156
Query 136 GTACTT-GGTCCAACAGTAATACCAAAT-GGAGGACAAT-TT-ACAGATTATTT-CTTTC 190
||| || ||||||| | |||||||| | ||| ||| | || ||| || ||| | |
Sbjct 157 GTA-TTCGGTCCAAAAACAATACCAA-TCGGACAACA-TGTTGACAT-TTCTTTTCGT-- 210
Query 191 AT-AATTTATTTGG-TACGACACGTTTTATGTGTACCTTAAAACAAGGGCCT 240
|| ||||||| || |||||| |||||||||||||| || | ||||| ||||
Sbjct 211 ATTAATTTATG-GGCTACGACGCGTTTTATGTGTACTTTGAGACAAGAGCCT 261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14079412341
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5