BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G30725.1

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484749 jgi|Araly1|484749|fgenesh2_kg.5__741__AT3G30725.1          466    4e-131


> Ahg484749 jgi|Araly1|484749|fgenesh2_kg.5__741__AT3G30725.1
Length=336

 Score =  466 bits (252),  Expect = 4e-131
 Identities = 301/324 (93%), Gaps = 6/324 (2%)
 Strand=Plus/Plus

Query  1    ATGAGGCCGACACCAAAAGTAGAAATCTGGAAGTCACCAGTACCATATCTCTTTGGTGGT  60
            ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||| 
Sbjct  1    ATGAGGCCGACACC---AGTAGAAATCTGGAAGTCACCAGTACCATATCTCTTTGGTGGG  57

Query  61   CTCTTTTTGCTTGTTTTGCTTATAGCTTTGGCATTACTCTCATTGGTCTGCACACACCAA  120
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  58   CTCTTTTTGCTTGTTTTGCTTATAGCTTTGGCATTACTTTCATTGGTCTGCACACACCAA  117

Query  121  AAA---CCTTCTTCCTCTAGCAATAACAATCATATGGATGAAGAAGACGATGTCGGTGAC  177
            |||   |||||||| || ||||||||||||| ||| |||||||||||||| ||||| |||
Sbjct  118  AAATCTCCTTCTTCTTCAAGCAATAACAATCCTATAGATGAAGAAGACGACGTCGGGGAC  177

Query  178  AAGGACGCTAAGCCTATTACAAGAGAGTACTTACCTAAGATCGTGGTGATTTTGGCCGGA  237
            ||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct  178  AAGGAAGCTAAGCCTATTACAAGTGAGTACTTACCTAAGATCGTCGTGATTTTGGCCGGA  237

Query  238  GACAATAAACCTACTTGCTTGGCTGTTCCGGTCGTGGTTCCTCCACCCACTTCCATTTTT  297
            ||||||||||||||||||||||||||||| |||| ||||||||| ||  ||||||||| |
Sbjct  238  GACAATAAACCTACTTGCTTGGCTGTTCCAGTCGCGGTTCCTCCGCCTTCTTCCATTTGT  297

Query  298  CGTTGTAACTGTGACAATGTTACT  321
            ||||||||||||||||||||||||
Sbjct  298  CGTTGTAACTGTGACAATGTTACT  321



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11904543768


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5