BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G30725.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value Ahg484749 jgi|Araly1|484749|fgenesh2_kg.5__741__AT3G30725.1 466 4e-131 > Ahg484749 jgi|Araly1|484749|fgenesh2_kg.5__741__AT3G30725.1 Length=336 Score = 466 bits (252), Expect = 4e-131 Identities = 301/324 (93%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 1 ATGAGGCCGACACCAAAAGTAGAAATCTGGAAGTCACCAGTACCATATCTCTTTGGTGGT 60 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAGGCCGACACC---AGTAGAAATCTGGAAGTCACCAGTACCATATCTCTTTGGTGGG 57 Query 61 CTCTTTTTGCTTGTTTTGCTTATAGCTTTGGCATTACTCTCATTGGTCTGCACACACCAA 120 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 58 CTCTTTTTGCTTGTTTTGCTTATAGCTTTGGCATTACTTTCATTGGTCTGCACACACCAA 117 Query 121 AAA---CCTTCTTCCTCTAGCAATAACAATCATATGGATGAAGAAGACGATGTCGGTGAC 177 ||| |||||||| || ||||||||||||| ||| |||||||||||||| ||||| ||| Sbjct 118 AAATCTCCTTCTTCTTCAAGCAATAACAATCCTATAGATGAAGAAGACGACGTCGGGGAC 177 Query 178 AAGGACGCTAAGCCTATTACAAGAGAGTACTTACCTAAGATCGTGGTGATTTTGGCCGGA 237 ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 178 AAGGAAGCTAAGCCTATTACAAGTGAGTACTTACCTAAGATCGTCGTGATTTTGGCCGGA 237 Query 238 GACAATAAACCTACTTGCTTGGCTGTTCCGGTCGTGGTTCCTCCACCCACTTCCATTTTT 297 ||||||||||||||||||||||||||||| |||| ||||||||| || ||||||||| | Sbjct 238 GACAATAAACCTACTTGCTTGGCTGTTCCAGTCGCGGTTCCTCCGCCTTCTTCCATTTGT 297 Query 298 CGTTGTAACTGTGACAATGTTACT 321 |||||||||||||||||||||||| Sbjct 298 CGTTGTAACTGTGACAATGTTACT 321 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11904543768 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5