BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G30775.1
Length=1866
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484750 jgi|Araly1|484750|fgenesh2_kg.5__742__AT3G30775.1 2726 0.0
> Ahg484750 jgi|Araly1|484750|fgenesh2_kg.5__742__AT3G30775.1
Length=1818
Score = 2726 bits (1476), Expect = 0.0
Identities = 1708/1816 (94%), Gaps = 31/1816 (2%)
Strand=Plus/Plus
Query 18 AGaaaaaaacagcgataaaaccgaaacatcaagcaaacaaaaaaaaaaGAGAAGAGAAAT 77
|||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1 AGAAGAAAACAGCGATAAAACCGAAACAT----CAAAC--AAAAAAAAGAGAAGAGAAAT 54
Query 78 TAtttttttttgttttcgttttCAAAAACAAAATCTTTGAATTTTATGGCAACCCGTCTT 137
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 55 CA---TTTTTTGTTTTCGTTTTCAAAAACAAAATCTTTGAATTTTATGGCAACCCGTCTT 111
Query 138 CTCCGAACAAACTTTATCCGGCGATCTTACCGTTTACCCGCTTTTAGCCCGGTGGGTCCT 197
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 112 CTCCGAACAAACTTTATCCGACGATCTTACCGTTTACCCGCTTTTAGCCCGGTGGGTCCT 171
Query 198 CCCACCGTGACTGCTTCCACCGCCGTCGTCCCGGAGATTCTCTCCTTTGGACAACAAGCA 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 CCCACCGTGACTGCTTCCACCGCCGTCGTCCCGGAGATTCTCTCCTTTGGACAACAAGCA 231
Query 258 CCGGAACCACCTCTTCACCACCCAAAACCCACCG-AGCAATCTCACGATGGTCTCGATCT 316
|| |||||||||||||||||||||||||| |||| || ||||||||||||||||||||||
Sbjct 232 CCAGAACCACCTCTTCACCACCCAAAACCAACCGAAG-AATCTCACGATGGTCTCGATCT 290
Query 317 CTCCGATCAAGCCCGTCTTTTCTCCTCTATCCCAACCTCTGATCTCCTCCGTTCCACCGC 376
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 291 CTCCGATCAAGCCCGTCTTTTCTCCTCTGTCCCAACCTCTGATCTCCTCCGTTCCACCGC 350
Query 377 CGTGTTGCATGCGGCGGCGATAGGTCCTATGGTCGACCTAGGGACGTGGGTCATGAGCTC 436
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 351 CGTGTTGCATGCGGCGGCGATAGGTCCTATGGTCGATCTAGGAACGTGGGTCATGAGCTC 410
Query 437 TAAACTTATGGACGCTTCGGTGACGCGTGGCATGGTTTTAGGGCTTGTGAAAAGTACGTT 496
||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||
Sbjct 411 TAAACTTATGGACGCCGCTGTGACGCGTGGCATGGTTTTAGGGCTTGTGAAAGGTACGTT 470
Query 497 TTATGACCATTTTTGCGCCGGTGAAGATGCCGACGCAGCCGCTGAGCGCGTGAGAAGCGT 556
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 471 TTATGACCATTTTTGCGCCGGTGAAGATGCCGACGCAGCCGCTGAGCGCGTGCGAAGCGT 530
Query 557 TTATGAAGCTACTGGTCTTAAAGGGATGCTTGTCTATGGCGTCGAACACGCCGATGACGC 616
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 531 TTATGAAGCTACGGGTCTTAAAGGTATGCTTGTCTATGGCGTCGAACACGCCGATAACGC 590
Query 617 TGTATCTTGTGATGATAACATGCAACAATTCATTCGAACCATTGAAGCTGCCAAATCTTT 676
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 591 TGCATCTTGTGATGATAACATGCAACAATTTATTCGAACCATTGAAGCTGCCAAATCTTT 650
Query 677 ACCAACATCTCACTTTAGCTCAGTGGTTGTGAAGATAACTGCCATTTGTCCAATTAGTCT 736
||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 651 ACCAACATCTCACTTTAGCTCAGTGGTCGTGAAGATAACCGCGATTTGTCCAATTAGTCT 710
Query 737 TCTGAAACGAGTGAGCGATCTGCTGCGGTGGGAATACAAAAGTCCGAACTTCAAACTCTC 796
||||||||||||||||||| |||| || ||||||||||| ||||| || |||||||||||
Sbjct 711 TCTGAAACGAGTGAGCGATTTGCTTCGATGGGAATACAAGAGTCCAAATTTCAAACTCTC 770
Query 797 ATGGAAGCTCAAATCGTTTCCGGTTTTCTCCGAATCGAGTCCTCTCTACCACACAAACTC 856
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 771 GTGGAAGCTCAAATCGTTTCCGGTTTTCTCCGATTCGAGTCCTCTCTACCACACAAACTC 830
Query 857 AGAACCGGAACCGTTAACCGCGGAAGAAGAAAG-GGAGCTCGAAGCAGCTCATGGAAGGA 915
|||||||||||| |||||||| ||||||| ||| |||||| |||||||||||||||||||
Sbjct 831 AGAACCGGAACCCTTAACCGCAGAAGAAG-AAGAGGAGCTTGAAGCAGCTCATGGAAGGA 889
Query 916 TTCAAGAAATCTGTAGGAAATGCCAAGAGTCCAATGTACCATTG-TTGATTGATGCGGAA 974
|||||||||||||||||||||||||||||||||||||||| ||| || || |||||||||
Sbjct 890 TTCAAGAAATCTGTAGGAAATGCCAAGAGTCCAATGTACCTTTGCTT-ATCGATGCGGAA 948
Query 975 GACACAATCCTCCAACCCGCGATCGATTACATGGCTTATTC-ATCGGCGATCATGTTCAA 1033
||||| ||||||||||| ||||||||||||||||||||||| || |||||| ||||||||
Sbjct 949 GACACGATCCTCCAACCGGCGATCGATTACATGGCTTATTCAAT-GGCGATTATGTTCAA 1007
Query 1034 TGCTGACAAAGACCGACCAATCGTTTACAACACGATTCAGGCGTACTTGAGAGACGCCGG 1093
||| |||||||||||||| || ||||||||||| |||||||||||||||||||| || ||
Sbjct 1008 TGCGGACAAAGACCGACCGATTGTTTACAACACTATTCAGGCGTACTTGAGAGATGCAGG 1067
Query 1094 TGAGAGACTGCATTTGGCAGTACAAAATGCTGAGAAAGAGAATGTTCCTATGGGGTTCAA 1153
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1068 TGAGAGATTGCATTTGGCAGTACAAAATGCCGAGAAAGAGAATGTTCCTATGGGGTTCAA 1127
Query 1154 GTTGGTGAGAGGGGCTTACATGTCTAGCGAAGCTAGCTTGGCGGATTCCCTGGGTTGCAA 1213
|||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||
Sbjct 1128 GTTGGTGAGAGGGGCTTACATGTCTAGCGAAGCTAGATTGGCTGATTCCTTGGGTTGCAA 1187
Query 1214 GTCGCCAGTCCACGACACAATTCAGGATACTCACTCTTGTTACAATGATTGTATGACATT 1273
||| ||||||||||||||||||||||| || |||||||||||||| | |||||||| ||
Sbjct 1188 GTCACCAGTCCACGACACAATTCAGGACACACACTCTTGTTACAACAACTGTATGACCTT 1247
Query 1274 CCTGATGGAGAAAGCATCAAACGGTTCTGGTTTCGGTGTCGTTCTCGCAACACATAACGC 1333
||||||||||||||| |||||||| || ||||| || |||||||| ||||||||||||||
Sbjct 1248 CCTGATGGAGAAAGCCTCAAACGGATCAGGTTTTGGCGTCGTTCTTGCAACACATAACGC 1307
Query 1334 TGATTCGGGGAGACTTGCGTCGAGGAAAGCGAGTGACCTCGGGATCGATAAACAGAACGG 1393
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1308 TGATTCTGGGAGACTTGCGTCAAGGAAAGCGAGTGACCTCGGGATCGATAAACAGAACGG 1367
Query 1394 GAAGATAGAGTTTGCACAGCTATATGGTATGTCAGATGCATTGTCCTTCGGGTTAAAGAG 1453
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1368 GAAGATAGAGTTTGCACAACTATATGGTATGTCAGATGCATTGTCCTTCGGTTTAAAGAG 1427
Query 1454 AGCAGGGTTCAATGTTAGCAAGTACATGCCGTTTGGACCCGTCGCAACCGCTATACCGTA 1513
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 AGCCGGGTTCAATGTTAGCAAGTACATGCCGTTTGGACCCGTCGCAACCGCTATACCGTA 1487
Query 1514 TCTTCTCCGACGCGCTTATGAGAACCGGGGAATGATGGCCACCGGAGCTCATGACCGTCA 1573
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1488 TCTTCTCCGACGCGCTTATGAGAACCGGGGAATGATGGCCACCGGAGCCCATGACCGCCA 1547
Query 1574 ACTCATGAGGATGGAACTTAAGAGGAGATTAATCGCCGGGATTGCGTAAAGAGA-GAGT- 1631
||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 1548 ACTCATGAGGATGGAACTTAAGAGGAGATTAATCGCCGGAATTGCGTAAAGAGAAGCGTT 1607
Query 1632 -A-TGG--A---GCCATTAAATGAAATTGGGAAATGTAGATGAATAAATTTCTTCTATGT 1684
| | | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 TAATTGTCATAAGCCATTAAATGAAATTGGGAAATGTAGATGAATAAATTTCTTCTATGT 1667
Query 1685 AGTTTAAGAAATTGAAAACA-AAAAA----TTATAATATAAGAAATGGAGTAGGTAAGAA 1739
|| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1668 AGATTAAGAAATTGAAAACACAAAAAAAAATTATAATATAAGAAATGGAGTAGGTAAGAA 1727
Query 1740 CATTTCCTGTGGCTAAATATTTTTCATGAGGGACTATGTTTTTACTATCAATATATCATT 1799
|||||| ||||||| |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1728 CATTTCATGTGGCTTAATATTTTTCATGACGGACTATGTTTTTATTATCAATATATCATT 1787
Query 1800 CACAAATGTATATTCA 1815
||||| ||||||||||
Sbjct 1788 CACAACTGTATATTCA 1803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70086050800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5