BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G30841.1
Length=1722
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897001 jgi|Araly1|897001|Al_scaffold_0005_967 2255 0.0
Ahg489806 jgi|Araly1|489806|fgenesh2_kg.6__2940__AT4G09520.1 1808 0.0
> Ahg897001 jgi|Araly1|897001|Al_scaffold_0005_967
Length=1488
Score = 2255 bits (1221), Expect = 0.0
Identities = 1401/1490 (94%), Gaps = 4/1490 (0%)
Strand=Plus/Plus
Query 109 ATGGAACAAGATCATGTAAAAGTCAAAAAGAGAGTAGCTTTTGTTCTAATCGATGGTTTA 168
||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGAACAAGAACATGTAGAAGTCAAAAAGAGAGTAGCTTTTGTCCTAATCGATGGTTTA 60
Query 169 GGAGATGTAACAATACCAAAACTAGGTTACAAAACTCCATTACAAGCAGCAAACATACCT 228
||||||||| ||||||| || |||||||||||||||||||||||| |||||||||||||
Sbjct 61 GGAGATGTATCAATACCGAAGTTAGGTTACAAAACTCCATTACAAGAAGCAAACATACCT 120
Query 229 AATCTCGACGCAATTGCATCAGCTGGTATCAACGGTTTAATGGATCCAGTAGAAGTTGGT 288
||||| ||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 121 AATCTTGACGCAATTGCTTCAGCTGGAATCAATGGTTTAATGGATCCTGTAGAAGTTGGT 180
Query 289 TTAGGTTGTGGTAGTGACACTGCTCATCTTTCTCTCATGGGTTATGATCCAAGAGTATAT 348
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 181 TTAGGTTGTGGTAGTGACACTGCTCATCTTTCTCTTATGGGTTATGATCCAAGAGTGTAT 240
Query 349 TACCGTGGACGTGGTGCTTTTGAGTCTATGGGTGCAGGTTTAGCTATGTCACCTGGTGAT 408
|| | || |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 TATAGAGGTCGTGGTGCGTTTGAGTCTATGGGTGCAGGGTTAGCTATGTCACCTGGTGAT 300
Query 409 ATAGCTTTCAAGTCTAATTTTGCAACTTTGGATGAGAAATCTGGAGTTGTTGTTAGTCGA 468
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 301 ATAGCTTTCAAGTCTAATTTTGCAACGTTGGATGAGAAATCTGGAGTTGTTGTTAGTAGA 360
Query 469 AGAGCTGATCGACATTTCGAAGAAGAAGGTCCTATACTTTGTGCAGCTCTTGATGG-GTT 527
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 AGAGCTGATCGACATTTCGAAGAAGAAGGTCCTATACTTTGTGCAGCTCTTGATGGAATG 420
Query 528 AAAGCTTCAATCTTTCCCTGAGTATGAAGTGAGAGTCAGATATGCGACGGAACATCGGTG 587
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 421 AAA-CTTCAATCTTTCCCTGAGTATGAAGTGAGAGTCAGATATGCGACGGAGCATAGGTG 479
Query 588 TGGTGTTGTTGTTAAA-GGGCCAAGACTTAGTGGGAATATATCTGGCACTGATCCGTTGA 646
|||||| |||| |||| ||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 480 TGGTGTGGTTG-TAAAGGGGCCAAGACTTAGTGGGAATATATCTGGAACAGATCCATTGA 538
Query 647 AAGATAATCGTTTGCTTCTTGAAGCTAAACCTTTAGATGAATCAGAAGAAGCTACTCACA 706
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||
Sbjct 539 AAGATAATCGTTTGCTTCTTGAGGCTAAACCTTTGGATGAATCAGAAGAAGCTAATCACA 598
Query 707 CTGCTAAAGTTGTTAACGAATTATCAAGAGAGATATCGCGTATTCTTGTTTCTCACCCGG 766
||||||||||||||||||| ||||||||||||||||||| |||||||| || ||||||
Sbjct 599 CTGCTAAAGTTGTTAACGAGTTATCAAGAGAGATATCGCACATTCTTGTATCCCACCCGA 658
Query 767 TTAACGCAGAGAGAGCTGCACAAGGCAAGAATATTGCAAATCTCGTTCTTTTACGTGGTT 826
|||| ||||| |||||| ||||||||||||||||||| ||||| ||||||||||| || |
Sbjct 659 TTAATGCAGAAAGAGCTACACAAGGCAAGAATATTGCGAATCTTGTTCTTTTACGAGGCT 718
Query 827 GTGGTATTCGAATCGAGGTACCTCCTTTTCATGAGAAGCATGGCTTGTGGCCATGTATGG 886
||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 719 GTGGTATTCGAATCGAGGTACCTCCTTTTCAAGAGAAGCACGGCTTGTGGCCGTGTATGG 778
Query 887 TAGCACCAACAAAGATTATAGCTGGACTTGGTATGTCGCTCGGTATTGACATTTTAGAAG 946
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 779 TAGCACCAACAAAGATTATAGCTGGACTTGGTATGTCTCTCGGTATTGACATTCTAGAAG 838
Query 947 CTCCGGGAGCTACTGGAGATTACCGGACGCTTCTGACATCGAAAGCAACTGCTATAGCTA 1006
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 839 CTCCGGGAGCTACTGGAGATTACCGGACGCTTCTGACATCGAAAGCAATTGCTATAGCCA 898
Query 1007 ATGCTCTCTCAGCTCCTTTGAATCCCTGCCCTAATGTCTTTGTACCGGGAGAGGACGGGC 1066
|||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 899 ATGCGCTCTCAGCTCCTTTGAATCCCTGCCCAAATGTTTTTGTACCGGGAGAGGACGGGC 958
Query 1067 ATAAACCAGGAAGGTCAGATGGTTATGATTTCGGGTTCCTTCACATAAAGGCTATAGATG 1126
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ACAAACCAGGAAGGTCAGATGGTTATGATTTCGGGTTCCTTCACATAAAGGCTATAGATG 1018
Query 1127 ATGCAGGTCATGATAAGGCGACAATGTTCAAAGTTCGAGGTTTAGAAGCTGTTGATAAGG 1186
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ATGCTGGTCATGACAAGGCGACAATGTTCAAAGTTCGAGGTTTAGAAGCTGTTGATAAGG 1078
Query 1187 CGATACGTCAGCTTGCTAAGCTTTTATGGCAAGCTGAGTCTTCTACACATTACCAGTATT 1246
| || |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1079 CAATTCGTCAGCTTGCTAAGCTTTTATGGCAAGCTGAATCTTCTACAAATTACCAGTATT 1138
Query 1247 TCTTGTGTGTGACCGGTGATCATTCAACTCCTGTTGAGTATGGAGACCACAGCTTTGAGC 1306
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1139 TCTTGTGTGTGACCGGTGATCATTCAACTCCTGTTGAGTATGGGGACCACAGCTTCGAGC 1198
Query 1307 CTGTCCCATTCACAATGTGCCGGTTAAGGGACTTTGTGAGCGCGGTGGGAGGAGAATCAG 1366
||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||
Sbjct 1199 CTGTCCCATTCACAATGTGTCGATTAAGTGACTTTGTGAGCGCGGTTGGAGGAGAATCAG 1258
Query 1367 CCGTACTAGAGACGTCTTTGGACCCTTTTCCACTTCCAACGGTTGTGGAATCAGGTGAAG 1426
|| || ||||||| |||||||||||||||||||||||||| |||||||||||| | ||||
Sbjct 1259 CCTTATTAGAGACATCTTTGGACCCTTTTCCACTTCCAACAGTTGTGGAATCAAGCGAAG 1318
Query 1427 ATGTTACCAAACAAGAGGAAGAGAGTGGGAGGAGGGAAGCTCCTCTGGCAATTGGTGGAG 1486
|||| |||||||| |||||||| ||||||||||||||| |||||| ||||||||||||||
Sbjct 1319 ATGTCACCAAACATGAGGAAGACAGTGGGAGGAGGGAAACTCCTCCGGCAATTGGTGGAG 1378
Query 1487 ATTTAGTTGCAGAGTTGAATGAGGTTGCAGCTGCAAGAGGATGTCTTGGCCGTTTCCATG 1546
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1379 ATTCAGTTGCAGAGTTGAATGAGATTGCAGCTGCAAGAGGATGTCTTGGCCGTTTCCATG 1438
Query 1547 GCGGTGAAATGATGGGAGTCATCACTAACTTTCTTAATCTAGAGGTATGA 1596
|||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1439 GCGGTGAAATGATGGGAGTCATCACTAAGTTTCTTAAACTAGAGGTATGA 1488
> Ahg489806 jgi|Araly1|489806|fgenesh2_kg.6__2940__AT4G09520.1
Length=1598
Score = 1808 bits (979), Expect = 0.0
Identities = 1317/1480 (89%), Gaps = 24/1480 (2%)
Strand=Plus/Plus
Query 122 ATGTAA-AAGTCAAAAAGAGAGTAGCTTTTGTTCTAATCGATGGTTTAGGAGATGTAACA 180
||| || |||||||||||||||| |||||||| || || |||||||| ||||||||| ||
Sbjct 98 ATGGAAGAAGTCAAAAAGAGAGTTGCTTTTGTACTGATTGATGGTTTGGGAGATGTATCA 157
Query 181 ATACCAAAACTAGGTTACAAAACTCCATTACAAGCAGCAAACATACCTAATCTCGACGCA 240
||||||| | ||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 158 ATACCAAGATTAGGTTATAAAACTCCATTACAAGCAGCAAACATACCTAATCTTGATGCA 217
Query 241 ATTGCATCAGCTGGTATCAACGGTTTAATGGATCCAGTAGAAGTTGGTTTAGGTTGTGGT 300
||||| ||| |||| ||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 218 ATTGCTTCATCTGGAATCAATGGTTTAATGGATCCAGTTGAAGTTGGATTAGGTTGTGGT 277
Query 301 AGTGACACTGCTCATCTTTCTCTCATGGGTTATGATCCAAGAGTATATTACCGTGGACGT 360
||||||||||||||||||||||| |||||||||||||||||||| |||||||| || ||
Sbjct 278 AGTGACACTGCTCATCTTTCTCTAATGGGTTATGATCCAAGAGTGTATTACCGAGGTCGC 337
Query 361 GGTGCTTTTGAGTCTATGGGTGCAGGTTTAGCTATGTCACCTGGTGATATAGCTTTCAAG 420
||||| ||||| ||||||||||| || |||||||||||||| ||||| ||||||||||||
Sbjct 338 GGTGCGTTTGAATCTATGGGTGCTGGATTAGCTATGTCACCAGGTGACATAGCTTTCAAG 397
Query 421 TCTAATTTTGCAACTTTGGATGAGAAATCTGGAGTTGTTGTTAGTCGAAGAGCTGATCGA 480
|||||||||||||||||||||||| | |||||||||||||||||| | ||||||||||||
Sbjct 398 TCTAATTTTGCAACTTTGGATGAGGATTCTGGAGTTGTTGTTAGTAGGAGAGCTGATCGA 457
Query 481 CATTTCGAAGAAGAAGGTCCTATACTTTGTGCAGCTCTTGATGGGTTAAAGCTTCAATCT 540
||||||||||||||||| || ||||||||||| ||||||||||| | ||||||| |||
Sbjct 458 CATTTCGAAGAAGAAGGACCGATACTTTGTGCTGCTCTTGATGGAATGAAGCTTCCTTCT 517
Query 541 TTCCCTGAGTATGAAGTGAGAGTCAGATATGCGACGGAACATCGGTGTGGTGTTGTTGTT 600
||||||||||||||||| |||||||||||||| ||||||||| | ||||| || |||||
Sbjct 518 TTCCCTGAGTATGAAGTTAGAGTCAGATATGCAACGGAACATAGATGTGGAGTGGTTGTA 577
Query 601 AAAGGGCCAAGACTTAGTGGGAATATATCTGGCACTGATCCGTTGAAAGATAATCGTTTG 660
|||||||||||||||||||||||||||||||| || || |||||||| ||||||||||||
Sbjct 578 AAAGGGCCAAGACTTAGTGGGAATATATCTGGAACAGACCCGTTGAAGGATAATCGTTTG 637
Query 661 CTTCTTGAAGCTAAACCTTTAGATGAATCAGAAGAAGCTACTCACACTGCTAAAGTTGTT 720
|||||||||||||||||||| ||||||||||||||||||| |||||| |||||||| |||
Sbjct 638 CTTCTTGAAGCTAAACCTTTGGATGAATCAGAAGAAGCTAATCACACAGCTAAAGTCGTT 697
Query 721 AACGAATTATCAAGAGAGATATCGCGTATTCTTGTTTCTCACCCGGTTAACGCAGAGAGA 780
||||||||||| || ||||||||||| |||||||||||||| |||||||| | | |||||
Sbjct 698 AACGAATTATCCAGGGAGATATCGCGCATTCTTGTTTCTCATCCGGTTAATGTAAAGAGA 757
Query 781 GCTGCACAAGGCAAGAATATTGCAAATCTCGTTCTTTTACGTGGTTGTGGTATTCGAATC 840
||||||||||| ||||||||||| ||||| || |||||| | || |||||||||||||||
Sbjct 758 GCTGCACAAGGAAAGAATATTGCCAATCTTGTCCTTTTAAGAGGCTGTGGTATTCGAATC 817
Query 841 GAGGTACCTCCTTTTCATGAGAAGCATGGCTTGTGGCCATGTATGGTAGCACCAACAAAG 900
||||| |||||||||||||||||||| || |||||||| ||||||||||||||||| |||
Sbjct 818 GAGGTTCCTCCTTTTCATGAGAAGCACGGTTTGTGGCCGTGTATGGTAGCACCAACGAAG 877
Query 901 ATTATAGCTGGACTTGGTATGTCGCTCGGTATTGACATTTTAGAAGCTCCGGGAGCTACT 960
|||||||| |||||||||||||| || |||||||||||| |||||||||||||||| |||
Sbjct 878 ATTATAGCCGGACTTGGTATGTCCCTTGGTATTGACATTCTAGAAGCTCCGGGAGCCACT 937
Query 961 GGAGATTACCGGACGCTTCTGACATCGAAAGCAACTGCTATAGCTAATGCTCTCTCAGCT 1020
|||||||||||||| ||||| ||||| ||||||| ||||||||| ||||| || ||||||
Sbjct 938 GGAGATTACCGGACACTTCTCACATCAAAAGCAATTGCTATAGCCAATGCGCTTTCAGCT 997
Query 1021 CCTTTGAATCCCTGCCCTAATGTCTTTGTA-CCGGGAGAGGACGGGCATAAACCAGGAAG 1079
||||||||||||||||| |||||||||| | || | ||| |||||||||||||| |||||
Sbjct 998 CCTTTGAATCCCTGCCCAAATGTCTTTG-ATCCAGCAGAAGACGGGCATAAACCGGGAAG 1056
Query 1080 GTCAGATGGTTATGATTTCGGGTTCCTTCACATAAAGGCTATAGATGATGCAGGTCATGA 1139
|||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1057 GTCAGATGGTTACGATTTTGGATTCCTTCACATAAAGGCTATAGATGATGCAGGTCATGA 1116
Query 1140 TAAGGCGACAATGTTCAAAGTTCGAGGTTTAGAAGCTGTTGATAAGGCGATACGTCAGCT 1199
||||| ||| |||||||||| ||||| || |||||||| ||||||||||||||||||||
Sbjct 1117 CAAGGCAACATTGTTCAAAGTCCGAGGCTTGGAAGCTGTGGATAAGGCGATACGTCAGCT 1176
Query 1200 TGCTAAGCTTTTATGGCAAGCTGAGTCTTCTACACATTACCAGTATTTCTTGTGTGTGAC 1259
||||||||| ||||||| || || |||||| || |||||||||||||||||||||||||
Sbjct 1177 CGCTAAGCTTCTATGGCATGCCGAATCTTCTTCAAATTACCAGTATTTCTTGTGTGTGAC 1236
Query 1260 CGGTGATCATTCAACTCCTGTTGAGTATGGAGACCACAGCTTTGAGCCTGTCCCATTCAC 1319
||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1237 TGGTGATCATTCTACTCCAGTTGAGTATGGAGACCACAGCTTCGAGCCTGTCCCATTTAC 1296
Query 1320 AATGTGCCGGTTAAGGGACTTTGTGAGCGCGGTGGGAGGAGAATCAGCCGTACTAGAGAC 1379
|||||||||| ||| |||||||||||||||||| ||||||||||||||| || |||||||
Sbjct 1297 AATGTGCCGGCTAAAGGACTTTGTGAGCGCGGTTGGAGGAGAATCAGCCTTATTAGAGAC 1356
Query 1380 GTCTTTGGACCCTTTTCCACTTCCAACGGTTGTGGAATCAGGTGAAGATGTTACCAAACA 1439
||| |||||||||||||||||||||||| ||| | | |||| | | | | |
Sbjct 1357 GTCGTTGGACCCTTTTCCACTTCCAACGAATGTC-A--C---TGAA-A-----C-AGA-A 1402
Query 1440 AGAGGAAGA-GAGTGGGAGGAGGGAAGCTCCT-CTGGCAATTGGTGGAGATTTAGT-TGC 1496
|| ||||| | |||||| || |||||||||| | ||| ||| ||||||| | ||| | |
Sbjct 1403 -GAAGAAGACG-GTGGGAAGAAGGAAGCTCCTTC-GGCGATTAGTGGAGACTCAGTCT-C 1458
Query 1497 AGAGTTGAATGAGGTTGCAGCTGCAAGAGGATGTCTTGGCCGTTTCCATGGCGGTGAAAT 1556
||| ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1459 AGAATTGAATGAGATTGCATCTGCAAGAGGATGTCTTGGCCGTTTCCATGGTGGTGAAAT 1518
Query 1557 GATGGGAGTCATCACTAACTTTCTTAATCTAGAGGTATGA 1596
||||||||||||||| || |||||||| ||||| ||||||
Sbjct 1519 GATGGGAGTCATCACCAAGTTTCTTAAGCTAGATGTATGA 1558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64601055520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5