BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G30849.1

Length=102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg949959 jgi|Araly1|949959|scaffold_801846.1                        124    8e-29
  Ahg932781 jgi|Araly1|932781|scaffold_400769.1                        124    8e-29
  Ahg916592 jgi|Araly1|916592|Al_scaffold_0008_1343                    119    4e-27


> Ahg949959 jgi|Araly1|949959|scaffold_801846.1
Length=768

 Score =  124 bits (67),  Expect = 8e-29
 Identities = 94/106 (89%), Gaps = 6/106 (6%)
 Strand=Plus/Plus

Query  1    ATGTCTCTCATGAATGCCT-CTAATCTAAATCTAGCTACCTATGTTGCATTTGATGATTT  59
            |||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||
Sbjct  23   ATGTCTCTCATGAATG-CTCCTAATCAAAATCTAGCTACCTATGTTGCATTTGATGATTT  81

Query  60   GCAACTTGGAACTCACGCCCAAC--GTTATTGGCT-GTATTGTTAG  102
             |||||||||| ||| || ||||  ||| ||| || ||||||||||
Sbjct  82   ACAACTTGGAATTCATGCTCAACATGTTGTTG-CTCGTATTGTTAG  126


> Ahg932781 jgi|Araly1|932781|scaffold_400769.1
Length=1251

 Score =  124 bits (67),  Expect = 8e-29
 Identities = 94/106 (89%), Gaps = 6/106 (6%)
 Strand=Plus/Plus

Query  1    ATGTCTCTCATGAATGCCT-CTAATCTAAATCTAGCTACCTATGTTGCATTTGATGATTT  59
            |||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||
Sbjct  23   ATGTCTCTCATGAATG-CTCCTAATCAAAATCTAGCTACCTATGTTGCATTTGATGATTT  81

Query  60   GCAACTTGGAACTCACGCCCAAC--GTTATTGGCT-GTATTGTTAG  102
             |||||||||| ||| || ||||  ||| ||| || ||||||||||
Sbjct  82   ACAACTTGGAATTCATGCTCAACATGTTGTTG-CTCGTATTGTTAG  126


> Ahg916592 jgi|Araly1|916592|Al_scaffold_0008_1343
Length=1302

 Score =  119 bits (64),  Expect = 4e-27
 Identities = 94/107 (88%), Gaps = 8/107 (7%)
 Strand=Plus/Plus

Query  1    ATGTCTCTCATGAATGCCT-CTAATCTAAATCTAGCTACCTATGTTGCATTTGATGATTT  59
            |||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTATCTCATGAATG-CTCCTAATCTAAATCTAGCTACCTATGTTGCATTTGATGATTT  59

Query  60   GCAACTTGGAACT-CACGCCCAAC--GTTATTGGCT-GTATTGTTAG  102
             |||||||||| | || || ||||  ||| ||| || ||||||||||
Sbjct  60   ACAACTTGGAA-TGCATGCTCAACACGTTGTTG-CTCGTATTGTTAG  104



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 3057674640


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5