BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G30875.1
Length=6698
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897003 jgi|Araly1|897003|Al_scaffold_0005_969 1823 0.0
Ahg492093 jgi|Araly1|492093|fgenesh2_kg.7__1526__AT4G27030.1 1264 0.0
Ahg945357 jgi|Araly1|945357|scaffold_701586.1 152 3e-35
> Ahg897003 jgi|Araly1|897003|Al_scaffold_0005_969
Length=2787
Score = 1823 bits (987), Expect = 0.0
Identities = 1204/1310 (92%), Gaps = 9/1310 (1%)
Strand=Plus/Plus
Query 2295 GTGGTGGCACATAAGCTTTCAACAGTTAGAGGAGCAAATATCATTGCCATGTTAGAAAAT 2354
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 988 GTGGTGGCGCATAAGCTTTCAACAGTTAGAGGAGCCAATATCATTGCTATGTTAGAAAAT 1047
Query 2355 GGTTCCGTTAGAGAATTGGGTTCTCATGAAGATTTGATGACAAAGAACAACCATTATGCA 2414
|||||||||| |||| | ||||||||||||||||||||||| || |||||||||||||||
Sbjct 1048 GGTTCCGTTAAAGAACTAGGTTCTCATGAAGATTTGATGACGAATAACAACCATTATGCA 1107
Query 2415 AAACTCGTAAAACTTCAAAGACAATTCGGTCATGAACATCAACAAGATCTTCAAGATAGG 2474
||||||||||| ||||||||||||| |||||||||||||| ||| ||||||||||||||
Sbjct 1108 AAACTCGTAAACCTTCAAAGACAATGCGGTCATGAACATCGACAGGATCTTCAAGATAGA 1167
Query 2475 GTCAACAGTCCTGAGATACAACAACGTTGGTCGACTATGAACAGTGTCATTAGGCTAAGC 2534
|| || | |||||||||||||||||||||||| ||||||||| |||||| ||||||||||
Sbjct 1168 GTTAAAACTCCTGAGATACAACAACGTTGGTCTACTATGAACTGTGTCAATAGGCTAAGC 1227
Query 2535 A-ATAGGTCATCTCCTGATCTCATTGTTTCTCC-TATCACATTGGAGAGCAATCACACAA 2592
| | |||||||||||||||||||||| |||||| || | ||||||| |||| | |||||
Sbjct 1228 AGA-AGGTCATCTCCTGATCTCATTGATTCTCCTTA-CCCATTGGAAAGCATTAACACAG 1285
Query 2593 CCAAGATCAATGAAAAT-ATCCCTTCTACTTCATTCACTCGACTTCTTCCATTTGTTTCT 2651
|||| |||||||| ||| | |||||||||||||||||| |||||||||||||| |||||
Sbjct 1286 CCAAAATCAATGATAATCA-CCCTTCTACTTCATTCACCCGACTTCTTCCATTGGTTTCC 1344
Query 2652 CCTGAGTGGAAGTCTTCTCTCGTCGGTTGCATATCAGCAACTACATTTGGTGCAATCCAA 2711
|||||||||||||||||||| ||||||||||| ||||| | ||||||||||||||||||
Sbjct 1345 CCTGAGTGGAAGTCTTCTCTTGTCGGTTGCATTTCAGCTGCAACATTTGGTGCAATCCAA 1404
Query 2712 CCGGTTTATGCCTTAAGTATTGGCGGTATGATATCAGCATTTTTCGCAAAAAGCTCTCAA 2771
|||||||||||||||| |||||||||||||| || |||||||| ||||||||||| ||
Sbjct 1405 CCGGTTTATGCCTTAACCATTGGCGGTATGATCTCCGCATTTTTTGCAAAAAGCTCACAG 1464
Query 2772 GAAATGCAAGATAAGATAC-ACATCTACTCTTTAATCTTCATTTCCCTTACCTTTCTCTC 2830
|||||||| | |||||||| | || ||||| |||||||||| |||||| |||||||||||
Sbjct 1465 GAAATGCAGGCTAAGATACGA-ATTTACTCCTTAATCTTCACTTCCCTCACCTTTCTCTC 1523
Query 2831 CATCACCCTTAATCTCCTTCAGCATTATAGTTTTGCAAAAATGGGTGAAAGGCTAATGCA 2890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 CATCACCCTTAATCTCCTTCAGCATTATAGTTTTGCAAAAATGGGTGAAAGGCTAATGCA 1583
Query 2891 ACGACTTCGGTTGAAAATGCTTGAAAAAATCTTTACCTTTGAACCTGCATGGTTTGATGT 2950
| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1584 AAGACTTCGGTTGAAAATGCTCGAAAAAATCTTTACCTTTGAACCTGCCTGGTTTGATGT 1643
Query 2951 GGAAGAGAACTTTACCAGTGAGATTTGTTCAAGGCTTAATAATGAAGTGTCCATTGTGAA 3010
|||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1644 GGAAGAGAACTTTAGTGGTGAGCTTTGTTCAAGGCTTAGTAATGAAGTGTCCATTGTGAA 1703
Query 3011 GTCCTTAGTAGCCGACAGAATCTCCTTACTTGTCCAGACCATTTCAGGTGTCACAATCGC 3070
||||||||||||||||||| | || || ||||||||||||||||||||||||||||||||
Sbjct 1704 GTCCTTAGTAGCCGACAGACTTTCGTTGCTTGTCCAGACCATTTCAGGTGTCACAATCGC 1763
Query 3071 AATGATCATAGGTCTACTAATTTCTTGGAAACTCGCGTTGGTAATGATCGCGGTACAGCC 3130
|||||| |||||||||||| |||||||||||||||||||||| ||||||||||| |||||
Sbjct 1764 AATGATTATAGGTCTACTACTTTCTTGGAAACTCGCGTTGGTGATGATCGCGGTCCAGCC 1823
Query 3131 ACTCTCTATCCTTTGCTTCTATACCAAAAAGGTTTTGCTCTCCAAAATTTCCAACAATTA 3190
||||||||||| |||||||| |||||||| |||||||||||||| |||||| |||||||
Sbjct 1824 TCTCTCTATCCTCTGCTTCTACACCAAAAAAGTTTTGCTCTCCAACATTTCCCACAATTA 1883
Query 3191 CGCCTATGCACAAAACCGTAGCTCACAGATTGCATCAGAAGCTATTTACAACCACAAAAT 3250
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1884 TGCCTATGCACAAAACCGTAGCTCACAAATTGCATCGGAAGCTATTTACAACCACAAAAT 1943
Query 3251 TGTTACATCCTTAGGGTCTACGAAGAAGATCATAGAAATATTTGACAATGCTCAATATGA 3310
| ||||||||||||||||||| ||||||||||||||||||||||| || ||||||||| |
Sbjct 1944 TATTACATCCTTAGGGTCTACAAAGAAGATCATAGAAATATTTGATAAGGCTCAATATAA 2003
Query 3311 GGCAAAAAGAAAGGGTAGGAAGGCAGCTTGGCTCGCAGGCTTTGGGATGGGGTCTGCACA 3370
||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 2004 GGCGAAAAGAAAGGGTAGGAAGGCAGCATGGCTTGCAGGCTTTGGGATGGGGTCGGCACA 2063
Query 3371 ATGCCTAACATTCTTGACATGGGCATTAGACTTTTGGTATGGAGGAGTGTTGGTTCAAAA 3430
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2064 GTGCCTAACCTTCTTGACATGGGCATTAGACTTTTGGTATGGAGGAGTGTTGGTTCAAAA 2123
Query 3431 AGGGGAAATATCGGCCGGGGATGTATTCAAGACATTCTTTGTTTTGGTAAGCACTGGCAA 3490
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2124 GGGGGAAATCTCGGCCGGGGATGTATTCAAGACATTCTTTGTTTTGGTAAGCACCGGCAA 2183
Query 3491 GGTTATTGCGGAAGCAGGAAGCATGACTTCTGACCTTGCCAAAGGCACTGCCGCCATTTC 3550
|||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 2184 GGTTATTGCGGAAGCAGGAAGCATGACTTCTGACCTCGCCAAGGGCTCTGCCGCCATTTC 2243
Query 3551 TTCTGTTTTCAATATCCTTGATCGTCCTTCATCGCATGTAAGTTACAAAC 3600
||| |||||||| |||||||| ||||||||||| || | || | ||||||
Sbjct 2244 TTCCGTTTTCAAGATCCTTGACCGTCCTTCATCTCAAGAAAAT-ACAAAC 2292
Score = 719 bits (389), Expect = 0.0
Identities = 433/455 (95%), Gaps = 0/455 (0%)
Strand=Plus/Plus
Query 886 GTGCCCATATTTTTGATGCACATATCAGTTTTCATCACTGGCCTTGTGTTTTCGGCATAC 945
||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 298 GTGCCCACATTCTTGATGCACATATCAGTTTTCATCACTGGCCTTCTGTTTTCGGCATAC 357
Query 946 TTTTCATGGAGATTAACCGTGGTGGCCATCCCAACACTTGTTCTTCTTCTAATCCCAGGG 1005
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 358 TTTTCATGGAGATTAACCGTCGTGGCCATCCCAACACTTGTTCTTCTTTTAATCCCAGGG 417
Query 1006 TTGATCTATGGCAAATACCTTGTTCACTTATCAAAGAAATCTTTTAAAGAATACACCAAA 1065
|||||||||||||||||||||||||||||||| ||||||||||| |||||| || | |||
Sbjct 418 TTGATCTATGGCAAATACCTTGTTCACTTATCTAAGAAATCTTTCAAAGAACACGCAAAA 477
Query 1066 GCAAACTCCATCGTGGAACAGGCTCTAAGCTCCATCAAGACAATTCTTTCATTCACAGCC 1125
|||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct 478 GCAAACTCCATCGTGGAACAAGCTCTAAGCTCCTTCAAGACCATTCTTTCATTCACAGCC 537
Query 1126 GAAACTCAAATAATCAAGAAATACTCGGAAGTCTTGGAAAGACACAAAAAGCTTGGGTTA 1185
|| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 538 GAGACTCAAATCATCAAGAAATACTCAGAGGTCTTGGAAAGACACAAAAAGCTTGGGTTA 597
Query 1186 AAGCAAGGTCTTGCCAAAGGTTTAGCCGTGGGAAGCTCAGGGATTTCATTCACCATTTGG 1245
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 598 AAGCAAGGTCTCGCCAAAGGTTTAGCTGTGGGAAGCTCAGGGATTTCATTCACCATTTGG 657
Query 1246 GCTTTTCTTGCTTGGTACGGAAGCAGATTGGTGATGCACAAACAAGAAACCGGTGGACGC 1305
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GCCTTTCTTGCTTGGTACGGAAGCAGATTGGTGATGCACAAACAAGAAACCGGTGGACGC 717
Query 1306 ATTTATGCAGCTGGTATCTCCTTCGTCTTGGGTGG 1340
||||||||||| || ||||||||||||||||||||
Sbjct 718 ATTTATGCAGCCGGGATCTCCTTCGTCTTGGGTGG 752
Score = 429 bits (232), Expect = 1e-118
Identities = 293/322 (91%), Gaps = 6/322 (2%)
Strand=Plus/Plus
Query 3692 GAAAATACAAACCATGGAG-AAAAGATGGGGACAA-TACA-AGGCCGAATAGAACTGAAG 3748
||||||||||||||||||| |||| || | || || || | ||| || ||||||||||||
Sbjct 2281 GAAAATACAAACCATGGAGCAAAA-ATTGAGA-AACTA-ATAGGGCGGATAGAACTGAAG 2337
Query 3749 AATATCGATTTTTCATACCCTAACCGGCCTAGTATTCTGGTGCTTCGAGATTTTTCCTTG 3808
|||||||||||||| |||||||||| ||||||||||| ||||||||| | |||||||||
Sbjct 2338 AATATCGATTTTTCTTACCCTAACCAGCCTAGTATTCCAGTGCTTCGACAATTTTCCTTG 2397
Query 3809 GATATCAAGCCTGGGACAAGCATTGGATTGGTTGGTACATCAGGATGTGGTAAATCAACA 3868
|| |||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 2398 GACATCAAGCCCGGGACAAGCATTGGATTGGTCGGTATATCAGGATGTGGTAAATCAACA 2457
Query 3869 GTGATAGCTTTGATCCAACGCTTCTATGATGTGGAAATAGGTTGTGTGAAAATAGATAGT 3928
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 2458 GTGATAGCTTTGATCCAACGTTTCTACGATGTGGAAATAGGTTGTGTGAAAATAGACAGT 2517
Query 3929 GAAAATTTGCGAGATATAAATATCAAATGGTATAGAAAACATACTGCTCTAGTGAGCCAA 3988
| | |||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||
Sbjct 2518 GTAGATTTGCGAGATATAGATATTAAATGGTATAGAAAACATACTGCACTAGTGAGCCAA 2577
Query 3989 GAGCCAGTTGTTTACTCAGGAA 4010
||||||||||||||||| ||||
Sbjct 2578 GAGCCAGTTGTTTACTCTGGAA 2599
Score = 313 bits (169), Expect = 1e-83
Identities = 220/244 (90%), Gaps = 5/244 (2%)
Strand=Plus/Plus
Query 1416 GGT-GCAGCTCTCTAGGGACGGCACTGACTGAAATAAGATACTTTTCCGAGGCTTCAGTT 1474
||| ||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 748 GGTGGCATCTCTCTAGGGACGGCACTGACTGAAATAAGATATTTTTCGGAGGCTTCAGTT 807
Query 1475 GCGGCAGCTCGAATATGTTCAAGAATTGATAGAATTTCAGAGATAGATGGTGAGGATACA 1534
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 808 GCAGCAGCTCGAATATGTTCAAGGATTGATAGAATTTCAGAGATAGATGGTGAGGATACA 867
Query 1535 AAGAAAGGATTCATACCCGGAGAGAAAATGAAGGGAAGAGTAGAGTTTGAACGTGTAACC 1594
||||||||||||||||| ||||| |||||||||||||||||||| ||||| | ||||||
Sbjct 868 AAGAAAGGATTCATACCAGGAGATAAAATGAAGGGAAGAGTAGAATTTGAGCATGTAACT 927
Query 1595 TT-AGTATATCTTTCTCGTCCAGAAACCA-TAATTCTCAAAGACTTCACTCTCACTGTTG 1652
|| | |||||| || ||| || |||| || |||||||||| || |||||||| |||| ||
Sbjct 928 TTCA-TATATCCTTGTCGACC-GAAATCAATAATTCTCAAGGATTTCACTCTTACTGCTG 985
Query 1653 ATGT 1656
||||
Sbjct 986 ATGT 989
Score = 252 bits (136), Expect = 3e-65
Identities = 169/185 (91%), Gaps = 2/185 (1%)
Strand=Plus/Plus
Query 4544 GATCATGGCTAGCCGAAATATGACTACTGTAGTAGTGGCTCACCGTCTGAACACCTTGAA 4603
||||||||||| ||| || ||||| || ||||||||||||||||| || ||||||||| |
Sbjct 2604 GATCATGGCTAACCGGAAGATGACAACAGTAGTAGTGGCTCACCGCCTCAACACCTTG-A 2662
Query 4604 AAAT-TTGGATTGTATTGCATTGATCGTAGATGGAACTGTAATAGAGACAGGGAGTTACG 4662
|||| ||||||||||||||| |||||| ||||||||| ||||| ||||||||||||||||
Sbjct 2663 AAATATTGGATTGTATTGCAATGATCGCAGATGGAACCGTAATGGAGACAGGGAGTTACG 2722
Query 4663 ACCACTTGAAAAATATTGGAGGCCAGTTCTCTAGGCTTGCACATGCTCATGATCTTAAAT 4722
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 2723 ACCACTTGAAAAATATTGGAGGCCAGTTCTCTAGACTTGTTCATGCTCATGATCTTAAAT 2782
Query 4723 CTTGA 4727
|||||
Sbjct 2783 CTTGA 2787
> Ahg492093 jgi|Araly1|492093|fgenesh2_kg.7__1526__AT4G27030.1
Length=1122
Score = 1264 bits (684), Expect = 0.0
Identities = 812/875 (93%), Gaps = 4/875 (0%)
Strand=Plus/Plus
Query 5171 TTACTACTACCAAGCCTCAGCTAAATCGTGAGAAGCTTGTGGTAGAGCAACGCATTGTGA 5230
||||||| | ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 123 TTACTACCATCAAGCCTCAGCCAAATCGTGAGAAGCTTGTGGTAGAGCAACACATTGTGA 182
Query 5231 AATCTCCTCTGTCAAACGA-CACAACCCTACAATTGACCAAGTTTCAGCCTAATCATGAG 5289
|| |||||||||| ||| | ||| || || |||| | ||||| || |||||| | ||||
Sbjct 183 AACCTCCTCTGTCCAACAACCAC-ACTCTGCAATCGTCCAAGCCTCGGCCTAACCGTGAG 241
Query 5290 AAGCTTGTGGTTGAGCAACGTCTTGTGAGTCCTCCTCTGACCAACGACCCAACTCTGAAA 5349
|||||||||||||||||||| |||| ||||||||||||| |||| ||||||||| |||||
Sbjct 242 AAGCTTGTGGTTGAGCAACGCCTTGCGAGTCCTCCTCTGTCCAATGACCCAACTTTGAAA 301
Query 5350 TCGACATGGACCCATCGGTTAAGGGTTGCAGCGGGCTGCACCACTTTGTTTGTCTCTTGA 5409
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
Sbjct 302 TCGACATGGACCCATCGGTTATGGGTTGCAGCAGGCTGCACCACTTTGTTTGTCTCTTTA 361
Query 5410 GCTAAATCTGTCATTGGAGGGTTTGATTCTCATCTCTGGCTCGATCCAGCTTTAGCCGGT 5469
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 362 GCTAAATCTGTCATTGGAGGGTTTGATTCTCATCTCTGGCTCGAACCAGCTTTAGCCGGT 421
Query 5470 TATGCAGGGTACATCTTAGCTGATCTAGGTTCCGGTGTCTACCACTTGGCCATTGATAAC 5529
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 422 TATGCAGGGTACATCTTAGCTGATCTAGGTTCTGGTGTCTACCACTGGGCCATTGATAAC 481
Query 5530 TATGGTGATGAGTCAACACCTGTAGTAGGAACCCAAATCGAAGCATTTCAGGGTCACCAC 5589
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 482 TACGGTGATGAGTCAACACCAGTAGTAGGAACCCAAATCGAAGCATTTCAGGGTCACCAC 541
Query 5590 AAGTGGTCTTGGACAATCACCATACGGTAATTTGCTAACAATCTACACGCTCTGGCTCAA 5649
|||||| ||||||||||||||| |||| ||||||| ||||||||||||||||||||||||
Sbjct 542 AAGTGGCCTTGGACAATCACCAGACGGCAATTTGCCAACAATCTACACGCTCTGGCTCAA 601
Query 5650 GTCATAACCTTTACAATTCTCCCACTAGACCTTGCATTTAACGACGATGTGTTTCATGGC 5709
|||||||||||||| ||||||||||||||||||||||||||||| ||| ||||| |||
Sbjct 602 GTCATAACCTTTACTGTTCTCCCACTAGACCTTGCATTTAACGACCCTGTCTTTCACGGC 661
Query 5710 TTTGTGTGCACATTTGCATTTTGCATAATGCTTAGCCAGCAATTCCATGCTTGGGCACAT 5769
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 662 TTTGTGTGCACATTTGCATTTTGCATAATGTTTAGCCAGCAATTCCATGCTTGGGCACAT 721
Query 5770 GGAACCAAGAGCAAGCGTCCACCTCTCGTGGTAGCGTTGCAGAACATGGGATTGCTTGTT 5829
|||||||||||||||| ||||||||||||||| ||||||||| ||||||| |||||||||
Sbjct 722 GGAACCAAGAGCAAGCTTCCACCTCTCGTGGTGGCGTTGCAGGACATGGGGTTGCTTGTT 781
Query 5830 TCAAGGAGACAGCACGCGGAACATCATCGAGCACCATATAACAACAATTACTGCATCGTG 5889
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 TCACGGAGACAGCACGCAGAACATCATCGAGCACCATATAACAACAATTACTGCATCGTG 841
Query 5890 AGTGGGACATGGAACAATGTTTTGGATGAGAGCAATGTCTTTGAAGAATTGGAGATGGTG 5949
|||||| ||||||||||||||||||||||||| || |||||||| | |||||||||||||
Sbjct 842 AGTGGGGCATGGAACAATGTTTTGGATGAGAGTAAGGTCTTTGAGGCATTGGAGATGGTG 901
Query 5950 TTTTTTATTTCCAGCTTGGGATGAGACCTCGATTATGGGGTGAACCAAACTCTGACTGGA 6009
|||| |||||||||||||| |||||||| | | |||| |||||||||||||||||||||
Sbjct 902 TTTT--ATTTCCAGCTTGGGGTGAGACCTAGGTCATGGAGTGAACCAAACTCTGACTGGA 959
Query 6010 TAGAAGAAACAGAGATCTCCAACAACAAAGCATAA 6044
||||||||| ||||||||||||||| ||||||||
Sbjct 960 CAGAAGAAACCGAGATCTCCAACAACCAAGCATAA 994
> Ahg945357 jgi|Araly1|945357|scaffold_701586.1
Length=793
Score = 152 bits (82), Expect = 3e-35
Identities = 90/94 (96%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 6426 CTTCTAACAAAGTTTCGAGAGCATCTATAACGCGACCAGATGTCCACGAGAGGCGTCTTT 6485
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 672 CTTCTAACAAAGTTTCGAGAGCATCTATAACCCGACCAGATGTCCATGAGAGGCGTCTTT 613
Query 6486 GTACCTCTTCCACAATCACAAAGCCTTGGCTCTG 6519
|||||||||||||| ||||||||||||||| |||
Sbjct 612 GTACCTCTTCCACAGTCACAAAGCCTTGGCCCTG 579
Score = 111 bits (60), Expect = 5e-23
Identities = 70/75 (93%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 6624 GAGCCAACTCCAACATCTGGTTATGGTCTTTGTTCAGCTCCGTGGGAACCGTACGAACAA 6683
||||||||||||| |||||||||||||||||||||||||||||||| || | ||| ||||
Sbjct 579 GAGCCAACTCCAAGATCTGGTTATGGTCTTTGTTCAGCTCCGTGGGTACAGAACGGACAA 520
Query 6684 GCTTTTTCTTGCCAA 6698
|||||||||||||||
Sbjct 519 GCTTTTTCTTGCCAA 505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 253882069483
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5