BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G31051.1
Length=144
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923064 jgi|Araly1|923064|scaffold_104345.1 122 4e-28
> Ahg923064 jgi|Araly1|923064|scaffold_104345.1
Length=296
Score = 122 bits (66), Expect = 4e-28
Identities = 111/131 (85%), Gaps = 9/131 (7%)
Strand=Plus/Plus
Query 6 CCTCTTGCACATGTTCCTGACACTATTCACTCGTGCTACGGATCACATCATGCCTCTTGC 65
||| |||||| |||||||| |||||||| ||||||||| |||||||||| ||||||||||
Sbjct 171 CCTTTTGCACTTGTTCCTGGCACTATTCGCTCGTGCTATGGATCACATCGTGCCTCTTGC 230
Query 66 ACTTGTTCCTAGCACTTCACACTCGTCGGCTCGTCGGCTCGTCAGCCATCCTGATCTATC 125
|||| ||||| |||||| | | |||||||||||||||||||||||||||||||
Sbjct 231 ACTTCTTCCTGGCACTT-----T-AT--ACTCGTCGGCTCGTCAGCCATCCTGATCTATC 282
Query 126 TGCAAACCCGC 136
|||| |||||
Sbjct 283 CGCAA-CCCGC 292
Score = 111 bits (60), Expect = 9e-25
Identities = 70/75 (93%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 6 CCTCTTGCACATGTTCCTGACACTATTCACTCGTGCTACGGATCACATCATGCCTCTTGC 65
|||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 67 CCTCTTGCACGTGTTCCTGGCACTAATCACTCGTGCTACGGATCACATCATGCCTATTGC 126
Query 66 ACTTGTTCCTAGCAC 80
|||||||||| ||||
Sbjct 127 ACTTGTTCCTGGCAC 141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 4620779581
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5