BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G31442.1

Length=886
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg908588 jgi|Araly1|908588|Al_scaffold_0002_1669                    111    7e-24
  Ahg910390 jgi|Araly1|910390|Al_scaffold_0001_644                    67.6    1e-10


> Ahg908588 jgi|Araly1|908588|Al_scaffold_0002_1669
Length=297

 Score =  111 bits (60),  Expect = 7e-24
 Identities = 211/281 (75%), Gaps = 22/281 (8%)
 Strand=Plus/Minus

Query  574  GTCGGAGTGACTAGCTTTCCGGGAGACTTGTGGTGGGTTGGTGCGTCAGAGT--TG-AGA  630
            ||||||||||||||||||||||||||||||||||||| |||| |||| |||   || | |
Sbjct  269  GTCGGAGTGACTAGCTTTCCGGGAGACTTGTGGTGGGCTGGTTCGTCGGAGGCATGTA-A  211

Query  631  CTTTTCTGACGAAAACCGGAATCTTTCGTCGGT-TTGGTCAAT-T-TTCCGAGGCGGCCA  687
             |    || || |||||||  ||||||| ||   ||  |||   | ||| |  |  ||||
Sbjct  210  -TGGA-TGGCGGAAACCGGTCTCTTTCGCCGAAATT--TCACGGTCTTCGGTTGTAGCCA  155

Query  688  CAAAGCGGTGGGTCTTGAGTCCGCCGGATCTAAAGCTTT-GGTCGCTCTGCTAGCGA-CG  745
            |||| | |||| ||||||| ||||||||| | | | ||  ||| |||||||  || | | 
Sbjct  154  CAAAACAGTGGATCTTGAGCCCGCCGGATTTCAGG-TTCCGGTTGCTCTGCGGGC-ATCT  97

Query  746  GTCAACAGGCGGCGATCtttttttCGTTTT-CCAGCGAGAT-GCCGATTTCCCATTTTGT  803
             ||||||  |||||| | | |||| ||||| || | || || ||||||||||  ||||||
Sbjct  96   ATCAACAAACGGCGAACCTCTTTT-GTTTTTCCGGTGA-ATTGCCGATTTCCTTTTTTGT  39

Query  804  AACTGGATCGTTTTTGTTTGTAGGCTTCGGCCCAAGCCCAT  844
            |||||||| |   || || ||||  ||||||||||||||||
Sbjct  38   AACTGGATTGGACTT-TT-GTAGA-TTCGGCCCAAGCCCAT  1


> Ahg910390 jgi|Araly1|910390|Al_scaffold_0001_644
Length=1575

 Score = 67.6 bits (36),  Expect = 1e-10
 Identities = 103/134 (77%), Gaps = 9/134 (7%)
 Strand=Plus/Plus

Query  588  CTTTCCGGGAGACTTGTGGTGGGTTGGTGCGTCAGAGT--TGAGACTTTTCTGACGAAAA  645
            |||||||||||||||||||||||||||| |||| |||   ||| | ||   || || |||
Sbjct  283  CTTTCCGGGAGACTTGTGGTGGGTTGGTTCGTCGGAGGCATGAAA-TTGA-TGGCGGAAA  340

Query  646  CCGGAATCTTTCGTCGGT-TTGGTCAAT-T-TTCCGAGGCGGCCACAAAGCGGTGGGTCT  702
            ||||  ||||||| ||   ||  ||| | | ||| |  || |||||||| |  |||||||
Sbjct  341  CCGGTCTCTTTCGCCGAAATT--TCACTGTCTTCGGTTGCAGCCACAAAACTCTGGGTCT  398

Query  703  TGAGTCCGCCGGAT  716
            |||| |||||||||
Sbjct  399  TGAGCCCGCCGGAT  412



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32823831537


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5