BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G31910.1
Length=1580
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897577 jgi|Araly1|897577|Al_scaffold_0005_1543 220 2e-56
> Ahg897577 jgi|Araly1|897577|Al_scaffold_0005_1543
Length=909
Score = 220 bits (119), Expect = 2e-56
Identities = 242/299 (81%), Gaps = 18/299 (6%)
Strand=Plus/Plus
Query 299 CGGGATAGCATCCTCTAGTA--ATACATTCAAATATCCTCGACGGCTATATGAAGAAGGT 356
|||||| |||||||| |||| || | ||||||||||||| || || |||||||||||
Sbjct 486 CGGGATGGCATCCTCCAGTACCAT-C-TTCAAATATCCTCCTCGCCTCTATGAAGAAGGA 543
Query 357 AAATCTCCATTGAAACA-CAGAAGCATGAATCACTACTGTT-TCTTGTCGAGAATTGGGA 414
|||||| ||| |||| || |||||||| ||| |||||| | ||||| | |||||||
Sbjct 544 AAATCTATTTTGCAACATCA-TAGCATGAACCACAACTGTTAT-TTGTCAAAAATTGGGC 601
Query 415 TGATTAAAGAAGGATTAGGTCAT-GATGTGTGGGATGCTTTAGAGAAATCATCTATTGGA 473
||||| ||||||||||||| | ||||||||||| ||| || |||||||| ||||
Sbjct 602 TGATTCGAGAAGGATTAGGT-GTGGATGTGTGGGACAAATTAAAGGAATCATCTCTTGGT 660
Query 474 GTGTTTCTAAAG-TTAGTTGACGTC-TCATACACATGGGCTGCAAAGAAGGTTCACTT-A 530
|| ||| ||||| || | ||| | | |||||||||||||||||||||||||||||| |
Sbjct 661 GTATTTATAAAGCTT-GCTGAAG-CAGAATACACATGGGCTGCAAAGAAGGTTCACTTTA 718
Query 531 TTCCTCATAAATCAGCTACGAGTAGACAACTT-CAAAGAGATTTGGTCTTTGATAGATG 588
| ||||| ||||||||| |||||| ||||||| || ||||||||||||||||| ||||
Sbjct 719 T-CCTCACAAATCAGCTGCGAGTAAACAACTTGCAT-GAGATTTGGTCTTTGATTGATG 775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59192240730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5