BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G32023.1

Length=1137
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg912348 jgi|Araly1|912348|Al_scaffold_0001_2602                    220    1e-56
  Ahg351655 jgi|Araly1|351655|fgenesh1_pg.C_scaffold_6002248           139    4e-32


> Ahg912348 jgi|Araly1|912348|Al_scaffold_0001_2602
Length=369

 Score =  220 bits (119),  Expect = 1e-56
 Identities = 171/195 (88%), Gaps = 8/195 (4%)
 Strand=Plus/Plus

Query  324  GGTTCAAAAGTAACACTGAAGTATCAACACGTGTTAGAAAGATCATTGAAGGGTGCTTCC  383
            ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||| 
Sbjct  179  GGTTCAAAAATAACACTGAAGTATCAACACGAGTTAGAAAGATCATTGAAGGGTGTTTCA  238

Query  384  AAGGACCATGGTACAGCTGGAAAAGAGTTCCGGCGTATTACAAAGA-GACATGGTTTTCA  442
            |||||||||||||||||||||||||||| ||| ||| |||||| || | |||||||||||
Sbjct  239  AAGGACCATGGTACAGCTGGAAAAGAGTGCCGCCGTTTTACAA-GAAGGCATGGTTTTCA  297

Query  443  ACGTTTATGGTT-GACTTCaatta-aatatttgatat-tgatagtattttcatcaattat  499
            ||||||| |||| | ||||||||| || |||| || | | ||| || ||||||| |||||
Sbjct  298  ACGTTTAAGGTTTG-CTTCAATTACAA-ATTTAATGTGT-ATAATACTTTCATCCATTAT  354

Query  500  ttaatttaagtttga  514
            || ||||| ||||||
Sbjct  355  TTTATTTATGTTTGA  369


 Score =  145 bits (78),  Expect = 9e-34
 Identities = 100/111 (90%), Gaps = 0/111 (0%)
 Strand=Plus/Plus

Query  137  CAAATGAACAAGCTGCAAATATTGAAGCAAATGAACAGAGAGAACAAGCTGCGCCTGTCA  196
            |||||  ||| |||| |||| ||||| ||||||||||||||||||||||||| || || |
Sbjct  71   CAAATTCACAGGCTGTAAATGTTGAACCAAATGAACAGAGAGAACAAGCTGCACCAGTAA  130

Query  197  TACGTGACATTCGAGTGCTCCACCCCTTAAGAAGGAATGGAGCTAAATGGT  247
            |||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct  131  TACGTGACATTCGACTTCTCCACCCCTTAAGAAGGAATGGAGCTAAATGGT  181


> Ahg351655 jgi|Araly1|351655|fgenesh1_pg.C_scaffold_6002248
Length=462

 Score =  139 bits (75),  Expect = 4e-32
 Identities = 100/112 (89%), Gaps = 2/112 (2%)
 Strand=Plus/Plus

Query  137  CAAATGAACAAGCTGCAAATATTGAAGCAAATGAACAGAGAGAACAAGCTGCGCCT-GTC  195
            |||||  ||| |||| |||| ||||| |||||||||||||||||||||||||  || || 
Sbjct  110  CAAATTCACAGGCTGTAAATGTTGAACCAAATGAACAGAGAGAACAAGCTGC-ACTAGTA  168

Query  196  ATACGTGACATTCGAGTGCTCCACCCCTTAAGAAGGAATGGAGCTAAATGGT  247
            |||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct  169  ATACGTGACATTCGACAGCTCCACCCCTTAAGAAGGAATGGAGCTAAATGGT  220


 Score =  126 bits (68),  Expect = 3e-28
 Identities = 122/148 (82%), Gaps = 4/148 (3%)
 Strand=Plus/Plus

Query  1    ATGACACGACCTCCAATCGTAAGTGGACGTTCGTTTGTGAGAGGAACAAATTTCGAGTCT  60
            ||||| ||| |||| ||||||||||||||||||||||||||||||||||||||| | | |
Sbjct  1    ATGACTCGATCTCCTATCGTAAGTGGACGTTCGTTTGTGAGAGGAACAAATTTCCAATAT  60

Query  61   ACTAGTACTTCA-TATACTGGTTTGCAAAGACCATTGGTTCCT-CAAATCTCAAATGCAC  118
             || || || || | | ||||||||||||||||||||| || | ||   | ||||| |||
Sbjct  61   GCTGGTTCT-CAATTTGCTGGTTTGCAAAGACCATTGGCTCATGCACCCC-CAAATTCAC  118

Query  119  AAGCTGCATATATTGAAGCAAATGAACA  146
            | |||| | || ||||| ||||||||||
Sbjct  119  AGGCTGTAAATGTTGAACCAAATGAACA  146



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42392683704


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5