BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G32030.1
Length=1815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891372 jgi|Araly1|891372|Al_scaffold_0007_3358 1559 0.0
Ahg904386 jgi|Araly1|904386|Al_scaffold_0003_1514 595 3e-169
> Ahg891372 jgi|Araly1|891372|Al_scaffold_0007_3358
Length=1845
Score = 1559 bits (844), Expect = 0.0
Identities = 1095/1217 (90%), Gaps = 13/1217 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGTAGCAAGAACGGTTTTTGGGCTCGGAACTCTCTCTTACCTTCACCAAGCTCCT 60
|||| || ||||| ||| |||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1 ATGGAAGCAGCAAAAACAGTTTTTGGGCTCGGAACTCTCTCTGACCTTCACCAACCTCCT 60
Query 61 CTCTTTCTTAAGACCAGTCAATCTCTCTTTCCTCGCCCTTCTCTTTCTCTGAAACCTATG 120
| |||||||||||||| || ||||| ||| ||||||||||||||||||| ||||| |||
Sbjct 61 ATGTTTCTTAAGACCAGCCACTCTCTGTTTTCTCGCCCTTCTCTTTCTCTAAAACCCATG 120
Query 121 AAGCACGACTTTGTATGTGTTAAGGCTACTACTAAGAGTTCGACTAGTGATGATCTTGAG 180
|| | | ||||| | || |||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 AAACCCAACTTTTTCTGCGTTAAGGCTAATACTAAGAGTTCGACTAGTGATGATCTTGAG 180
Query 181 AGTGGTCGTCCTTCGATACTCTTTTCTCCCTCCATTTGGGGAGATTACTTCCTCTCAGTT 240
||||||||||||| || | |||| ||||| | ||||||||||||||||||||||| ||
Sbjct 181 AGTGGTCGTCCTTTGACCCACTTTGCTCCCACTTTTTGGGGAGATTACTTCCTCTCACTT 240
Query 241 TCGGTTGACGATTCCGAATTTGATGACATAGCGAGAGAGATTGAATCCGTGATGAAGCCA 300
|| || |||||||||||||||||| | |||| ||||||||||||||| ||||||||||||
Sbjct 241 TCCGTCGACGATTCCGAATTTGATAAAATAGAGAGAGAGATTGAATCGGTGATGAAGCCA 300
Query 301 TACGTGAGAGACAGGCTCATCTCTTCTCACAACAGCAACAAGGACAAGATTCGTTTAATC 360
|||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 301 AACGTGAGAGACAAGCTCATCTCTTCTCACAACAGTAACAAGGACAAGATTCGATTAATC 360
Query 361 CATTTGCTTATCAGCCTTGGCATCTCGTATTAC-TTCGAGAGCGAAATTGAGATGATCCT 419
||||||||||| ||||| || |||||| ||||| || |||| ||| || |||||||||||
Sbjct 361 CATTTGCTTATAAGCCTCGGTATCTCGCATTACATT-GAGACCGAGATCGAGATGATCCT 419
Query 420 AAACAAGGCTTTTGAAGAGCTGGACATGATAATAGCCGAGGAAGACGATTTGGAAACAAT 479
|||| || ||||| ||||| ||||| ||||||| |||||||||||||||||||||||||
Sbjct 420 AAACCAGACTTTTAAAGAGTTGGACGGGATAATATCCGAGGAAGACGATTTGGAAACAAT 479
Query 480 CTCCATCATGTTTGAGGTTTTCCGACTATATCAACACAAGATGTCATGCGATAGCTTCGT 539
||||||||||||||||||||| ||||| |||||||||||||| |||||||||| ||||||
Sbjct 480 CTCCATCATGTTTGAGGTTTTTCGACTGTATCAACACAAGATTTCATGCGATACCTTCGT 539
Query 540 AAGATTCAAGGGTGAAGATGGGAGGCTCAAGGAGAGTCTAGTCGGGGATGTTAGAGGAAT 599
||||||||| ||| ||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 540 AAGATTCAAAGGTAAAGATGGGAGGTTCAAGGAGAGTCTAGTCGCGGATGTTAGAGGAAT 599
Query 600 GCTACAATTATACCAAGCAGCGCATCTTGGGACACCCTCTGATCAATATATAATGGAGGA 659
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 600 GCTACAATTATACCAAGCAGCGCATCTTGGGACACCCTCTGA--AG-ATATAATGGAGGA 656
Query 660 AGCCAAGAGTTTCACTAGGAACCACTTGGAGTCTTTGGTAGA-GAGTACTACTATTCCTC 718
||| |||||||||||||||||||| ||||||||||||||| | |||||||||||||||||
Sbjct 657 AGCAAAGAGTTTCACTAGGAACCAGTTGGAGTCTTTGGTA-ACGAGTACTACTATTCCTC 715
Query 719 CACATTTCTCCTCACATATTCGTGACGCCTTGTACATAGATCGATATCATAACATGGAAA 778
||||| |||| |||||||||||| |||||||||||| || ||||||||||||||||||||
Sbjct 716 CACATCTCTCATCACATATTCGTAACGCCTTGTACAGAGCTCGATATCATAACATGGAAA 775
Query 779 TACTAGTCGCAAG-GAAATACATCTCTTTCTACGAACAAGAAGAAGGTCATGATCTGACG 837
||||||||||||| ||| |||||||||||||| || ||||||||||||||||| ||||||
Sbjct 776 TACTAGTCGCAAGAGAA-TACATCTCTTTCTATGACCAAGAAGAAGGTCATGACCTGACG 834
Query 838 CTTCTCAAGTTTGGAAAGCTCAGCTTCAATTATTGTCGTTTACATTACATCCAAGAGCTC 897
||||||||||||| |||||||| |||||| ||||| ||||| | |||||| |||||||||
Sbjct 835 CTTCTCAAGTTTGCAAAGCTCAACTTCAACTATTGCCGTTTGCTTTACATACAAGAGCTC 894
Query 898 AAAACTCTCACCAAATGGTGGAAAGATCAAGATATTCCCTCTAACCTTCCTTGCGTGAGG 957
||||| |||||||||||||||||||||| |||||| ||| |||| ||||||| |||||||
Sbjct 895 AAAACACTCACCAAATGGTGGAAAGATCTAGATATCCCCACTAAGCTTCCTTACGTGAGG 954
Query 958 GATAGAATTGTGGAGACCTATTTCCCTACATTGGGACTATATTTCGAGCCACGATTTTCA 1017
||||||||||||||| ||||||||||| || ||||| || ||||||||||||||||||||
Sbjct 955 GATAGAATTGTGGAGTCCTATTTCCCTGCAGTGGGAATACATTTCGAGCCACGATTTTCA 1014
Query 1018 CTTGGGAGAATTATAATAGCTAAAATGACCATCATCGTGGTTGCTTTGAATGACGTGTGT 1077
||||||||||||||| |||||||| | |||| || ||||||||||||| ||| |||
Sbjct 1015 CTTGGGAGAATTATAGCGGCTAAAATTATCATCGTCCTGGTTGCTTTGAACGACACCTGT 1074
Query 1078 GATTCATATGCAACTTA-CCCCGAAGCTAAAAGTCTCATAGACTCTTTGCAAAGGTGGGA 1136
|||||||||||||||| |||| |||||||||||||||| || |||||||||||||||||
Sbjct 1075 GATTCATATGCAACTTTTCCCC-AAGCTAAAAGTCTCATTGATTCTTTGCAAAGGTGGGA 1133
Query 1137 TATTGAAGCGATTGACGAACTACCAAA-CTATTCGAGAATAGTCCTCCGATTAATATTGG 1195
| |||||| |||||||||||||| ||| |||||||||||||||| |||||||||||||||
Sbjct 1134 TCTTGAAGGGATTGACGAACTAC-AAAGCTATTCGAGAATAGTCGTCCGATTAATATTGG 1192
Query 1196 AAACTATAGGAGAGATT 1212
||||||| |||||||||
Sbjct 1193 AAACTATGGGAGAGATT 1209
Score = 828 bits (448), Expect = 0.0
Identities = 568/625 (91%), Gaps = 12/625 (2%)
Strand=Plus/Plus
Query 1195 GAAACTATAGGAGAGATTGAAAGAGAAATGAAGCCCCGAGGAAGATCTGCTAGTGTACAA 1254
|||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||| ||
Sbjct 1225 GAAACTATGGGAGAGATTGAAAGAGAAATGATGCCCCGAGGAAGATCTGCTTGTGTAAAA 1284
Query 1255 CACACGATAGATGAGACTAAGAGCTTAGGGAGAGCGTACCTAGCATTATCAAAATGGGCA 1314
|| |||||||| |||||||||| | |||||||| ||||||||||||||||||||||||||
Sbjct 1285 CAGACGATAGAGGAGACTAAGAACCTAGGGAGATCGTACCTAGCATTATCAAAATGGGCA 1344
Query 1315 AGTGAAGGCT-ATATGCCAACCTTTGATGAGTACATGGAGGTTGGGGAGGTCACTGGGGG 1373
|||||||| | || ||||||||||||||||||||||| |||||||| |||||| | ||
Sbjct 1345 AGTGAAGG-TCATGTGCCAACCTTTGATGAGTACATGAAGGTTGGGCTGGTCACCGCAGG 1403
Query 1374 GATGGATGATTTTGCTTTGTACAGCTTTATCGCGATGGAAGATTGCGACGAGAAACCATT 1433
||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||
Sbjct 1404 GATGGATGATTTTGCTTTGTACAGCTTTATCGCGATGGAAGATTGTGATGAGAAACAATT 1463
Query 1434 GTACGAATGGTTTGACTCCAAGCCAAAAATATTACAAGCTTTGAGTGTTCTAT--ATCGT 1491
|||||||||||| |||||||| |||||||||| ||||||||| || | ||| |||||
Sbjct 1464 GTACGAATGGTTCAACTCCAAGTCAAAAATATTCCAAGCTTTG--TGCTATATGTATCGT 1521
Query 1492 ATAAACAACGACAT-AGTCACCTACGAGAGAGAGATGAGCAAAGGAGAGGTCGTGAATGG 1550
||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1522 GTAAACAACGACATCA-TCACCTACGAGAGAGAGATGAGCAAAGGAGAGGTGGTGAATGG 1580
Query 1551 GGTAAACTCTTACATGAATCAACACGGTGTTACTAAAGAAGAAGCGGTTGAAGAATTGAG 1610
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1581 GGTCAACTCTTACATGAATCAACACGGTGTTACTAAAGAAAAAGCGGTTGAAGAATTGAG 1640
Query 1611 AAAGATGGCTAGAGATAACTATAAAATAGTCATGGAGGAGTTGTTGACGATCA-CTGATG 1669
||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||
Sbjct 1641 TAAGATGGCTAGAGATAACTATAAGATAGTCATGGAGGAGTTGTTGACGA-CAACTGATG 1699
Query 1670 TGCCACGACCAGTTTTGGTGCGATGCCTCAATC-TTGCACGCTTGTTCGATGTGTTTTGC 1728
||||||||| |||| ||||||| |||||||| | ||||||||||| ||||||||||||||
Sbjct 1700 TGCCACGACAAGTTCTGGTGCGTTGCCTCAA-CATTGCACGCTTGATCGATGTGTTTTGC 1758
Query 1729 AAGCATGGTAATGATGAATTCACCTATCCGCATGGAAATCTCAAAGATCTCATCACCTCT 1788
||| ||||| |||||||||| || ||||||||||||| |||||||||||||||||||||
Sbjct 1759 AAGGATGGTGCTGATGAATTCTCCAATCCGCATGGAAAGCTCAAAGATCTCATCACCTCT 1818
Query 1789 ATATTCATCCATCCCATTCCTGTTT 1813
|||||||| ||| ||||||||||
Sbjct 1819 CTATTCATCTATCATATTCCTGTTT 1843
> Ahg904386 jgi|Araly1|904386|Al_scaffold_0003_1514
Length=1809
Score = 595 bits (322), Expect = 3e-169
Identities = 1266/1707 (74%), Gaps = 124/1707 (7%)
Strand=Plus/Plus
Query 171 TGATCTTGAGAGTGGTC-GTCCTTCGATACTCTTTTCTCCCTC-CATTTGGGGAGATTAC 228
||||||||| ||| ||| | |||| | || |||||||||| | | ||||||||||| ||
Sbjct 165 TGATCTTGAAAGTAGTCGGCCCTT-GGCACACTTTTCTCCCACTC-TTTGGGGAGATCAC 222
Query 229 TTCCTCTCAGTTTCGGTTGACGAT-TC-C-GAATTTGATGACATAGCGAGAGAGATTGAA 285
||||| || | | | | |||| || | ||||||| ||| | | |||||||| |||
Sbjct 223 TTCCTTTCTG-TCCCCCT--CGATGTCGCTGAATTTGCTGATTTCTCAAGAGAGATGGAA 279
Query 286 TCCG-TGATGAAGCCATACGTGAGAGACAGGCTCATCTCTTCTC-ACAACAGCAACAAGG 343
| |||||||||| | |||||| ||| |||||| ||||| | | ||| || |||| |
Sbjct 280 -GTGACGATGAAGCCAAAAGTGAGAAACATGCTCATGTCTTC-CAAAAACGGCGACAATG 337
Query 344 ACAAGATTCGTTTAATCCATTTGCTTATCAGCCTTGGCATCTCGTATTACTTCGAGAGCG 403
| | ||| ||| | || ||||||| || | ||| || ||| | ||| | ||||||| |
Sbjct 338 AGAGGATCCGTCTCATTTATTTGCTCATTAACCTCGGAATCGCATATCATTTCGAGATTG 397
Query 404 AAATTGA-GATGA-TCCTAAACAAGGCTTTT--GAA-GAGCTGGACATGATAATAGCCGA 458
| ||||| || || || | ||| |||||| ||| | ||||||| |||||| |
Sbjct 398 AGATTGATGA-GATTCTTGGCCAA-GCTTTTGGGAATTTGGAGGACATG---ATAGCCAA 452
Query 459 GGAAGACGATTTGGAAACAATCTCCATCATGTTTGAGGTTTTCCGACTATATCAAC-ACA 517
| || | |||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 453 GCAAAATGATTTGGAAACAATCTCCATCATGTTTGAGGTTTTCAGACTACG-CGGTTACT 511
Query 518 AGATGTCATGCGATAGC-TTCGTA-AGATTCAAGGGTGAAGATGGGAGGCTCAAGGAGAG 575
| ||| | |||||| || ||| || |||||||| ||||||||||| ||| ||||||| ||
Sbjct 512 ATATGCCTTGCGAT-GCATTC-TATAGATTCAAAGGTGAAGATGGTAGGTTCAAGGAAAG 569
Query 576 TCTAGTCGGG-GATGTTAGAGGAATGCTACAATTATACCAAGCAGCGCATCTTGGGACAC 634
||||| | | ||| ||||||| |||||||| | ||| ||||||| ||||| | |||||
Sbjct 570 TCTAG-CTGAAGATATTAGAGGGATGCTACAGCTGTACGAAGCAGCACATCTCGCGACAC 628
Query 635 CCTCTGATCAATATATAATGGAGGAAGCCAA-GAGTTTCACTAGGAACCACTTGGAGTC- 692
| ||||| | |||||||||| ||||| | |||||||||| || | |||||||||||
Sbjct 629 CATCTGA--AG-ATATAATGGACGAAGC-ATTGAGTTTCACTCGGTATCACTTGGAGTCA 684
Query 693 TT--T-GGT-AG-A-G-AGT-ACTACTATTCCTCCACATTTCTCCTCA-CATATTCGTGA 743
|| | ||| | | | ||| | | ||| || || ||| |||| | | ||||| |
Sbjct 685 TTGATAGGTCATCACGCAGTTAGTGCTAG-CC-CC-CATCTCTC-TAAGCATATAAAAAA 740
Query 744 CGCCTTGTACATAGATCGATATCATAACATGGAAATACTAGTCGCAAG-GAAATACATCT 802
| | ||| ||| || |||||||||||||||||| ||| ||||| |||| ||| | ||||
Sbjct 741 CACATTGAACAGAGCTCGATATCATAACATGGAGATAATAGTCTCAAGAGAATTT-ATCT 799
Query 803 CTTTCTACGAACAAGAAGAAGGTCATGATCT-GACGCTTCTCAAGTTTGGAAAGCTCAGC 861
|||||||||| |||||||||| ||| | | ||| || |||||||||| |||||||| |
Sbjct 800 CTTTCTACGATCAAGAAGAAGATCACAA-CGAGACCCTGCTCAAGTTTGCAAAGCTCAAC 858
Query 862 TTCAATTATTGTC-GTTTACATTACATCCAAGAGCTCAAA-ACTCTCACCAAATGGTGGA 919
|| |||||||| | | || ||||||||||||||||| ||| | ||| |||||||||||||
Sbjct 859 TTTAATTATTGCCAGCTT-CATTACATCCAAGAGCTAAAAGA-TCTGACCAAATGGTGGA 916
Query 920 AAGA-TCAAGATATTCCCTCTAACCTTCCTTGCGTGAGGGATAGAATTGTGGAGACCTAT 978
| || | | ||| || | ||||| || |||| | ||||| |||||||| ||| ||||
Sbjct 917 AGGAGTTA-GATCTTGCATCTAAGCTACCTTATATCAGGGACAGAATTGTAGAGGTCTAT 975
Query 979 TTCCCTACATTGGGACTATATTTCGAGCCACGATTTTCACTTGGGAGAATTATAAT-AGC 1037
|| ||| | | | ||||| ||||| || | ||| ||||||||| |||| | | |
Sbjct 976 TTTGGGACACTCACAATGTATTTTGAGCCGCGGTATTCGTTTGGGAGAAATATAGTCA-C 1034
Query 1038 TAAAATGACCAT-CATCGTGGTTGCTTTGAATGACGTGTGTGATTCATATGCAACT-TAC 1095
|||| | ||||| | | | | || |||||||||| |||||| |||||| |||| | |
Sbjct 1035 TAAACTTACCATGCTT-GCGACTGTTTTGAATGACACATGTGATGCATATGGAACTCTTC 1093
Query 1096 CCCGAAGCTAAAAGTCTCATAGACTCTTTGCAAAGGTGGGATATTGAAGCGATTGACGAA 1155
| |||| || ||||||||| || ||||| |||||||||||| ||| | | ||| ||
Sbjct 1094 CT-GAAGTTACAAGTCTCATTGATTCTTTCCAAAGGTGGGATCTTGGGGAAACTGAA-AA 1151
Query 1156 -CTACCAAACTAT-TCGAGAATAGTCCTCCGA--TTAATATTGGAAACTATAGGAGAGAT 1211
||||||| |||| | ||||| ||| | ||| || | ||| | ||| ||| ||||||
Sbjct 1152 GCTACCAAGCTATATA-AGAATCGTCTTTCGAAGTTTGT-TTG-ATACTTTAGAAGAGAT 1208
Query 1212 TGAA-AGAGAAATGAAGCCC-CGAGGAAGATCT-GCTAGTGTACAAC-A-CACGATAGAT 1266
|||| | |||||| ||| || ||||||||||| || ||||| ||| | | | ||||||
Sbjct 1209 TGAACA-AGAAAT-AAGGCCACGAGGAAGATCACGC-AGTGTGCAAGTAGC-C-ATAGAT 1263
Query 1267 GAGACT-AAGA-GCTTAGGGAGAGCGTACCTAGC-ATTATCAAAATGGGCAAGTG-AAGG 1322
| || | || | | || |||| ||| ||| | || || ||||||||||| | | |||
Sbjct 1264 GCGA-TGAAAAAG-TTGGGGAAAGCATACTTGGCCATCG-CAAAATGGGCACGCGCAAGT 1320
Query 1323 CTATATGCCAACCTTTGATGAGTACATGGAGGTTGGGGAGGTCACTGGGGGGATGGATGA 1382
| | ||||||||||||| ||||| |||||| ||| | | || |||||| |
Sbjct 1321 C-ACGTGCCAACCTTTGAGGAGTATATGGAGTTTGCA-ATG-CAAACATCA-ATGGATCA 1376
Query 1383 TTTTGCTTTGTACAGCTTTATCGCGATGGAAGATTGCGACGAGAAACCATTGTACGAATG 1442
| ||| || |||||||| | ||||||||||| || ||||| | | || ||| ||
Sbjct 1377 ATATGCAGCCTATAGCTTTATTGTTATGGAAGATTGTGATGAGAATCAAACGTGCGAGTG 1436
Query 1443 GTTTGACTCCA-AGCCAAAAAT-ATTACAAGCTTTGAGT-GTTCTATATC-GTATAAACA 1498
|| | |||| | |||||| | || ||||||| | | | | | || || | || |
Sbjct 1437 GTACAATTCCAGACCCAAAA-TGATGG-AAGCTTTAAATAGCG-TGT-TCCGTCTTAAGA 1492
Query 1499 ACGACATAGTCACCTACGAGAGAGAGATGAGCAAAGGAGAGGTCG-TGAATGGGGTAAAC 1557
|||||||| | ||||| |||| ||||| || || |||||| || | | || ||| | ||
Sbjct 1493 ACGACATAATTACCTATGAGAAAGAGACGAACAGAGGAGATGTGGCTAAA-GGGCTGAAT 1551
Query 1558 TCTTACATGAATCAACACGGTGTTACTAAAGAAGAAGCGGTTGAAGAATTGAGA-AAGAT 1616
| ||||||||| ||||| |||||||| |||||||||||||||| |||||||| | |||||
Sbjct 1552 TGTTACATGAAGCAACATGGTGTTACCAAAGAAGAAGCGGTTGGAGAATTGA-ACAAGAT 1610
Query 1617 GGCTAGAGATAACTATAAAATAGTCATGGAGGAGTTGTTGACGATCA-CTGATGTGCCAC 1675
|||||| ||| | || |||||| | |||||||||| ||||||| || | | ||||||||
Sbjct 1611 GGCTAGTGATTATTACAAAATAATAATGGAGGAGTACTTGACGA-CAACAGCTGTGCCAC 1669
Query 1676 GACCAGTTT-TGGTGCGATGCCTCAATC-TTGCACG-CTTGTTCGATGTGTTTTGCAAGC 1732
| || | || |||||||||||||||| | || |||| | || ||| | |||| || |
Sbjct 1670 GCCC-GATTCTGGTGCGATGCCTCAA-CGTTTCACGACCCATT-GATCTTTTTTACAGGG 1726
Query 1733 ATGGTAATGATGAATTCACCTATCCG-CAT--GGAAATCTCAAAGATCTCATCACCTCTA 1789
|| || ||||||||||| |||| | | ||||| |||||||| ||||||| |||
Sbjct 1727 ATAGT---GATGAATTCACAGATCCTTCTTTCGGAAAGCTCAAAGAAGTCATCACTTCTT 1783
Query 1790 TATTCATCCATCCCATTC-CTGTTTGA 1815
| ||||||||||| || | || |||||
Sbjct 1784 TCTTCATCCATCCAAT-CGCTCTTTGA 1809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68143448305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5