BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G32904.1
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493748 jgi|Araly1|493748|fgenesh2_kg.7__3181__AT3G32904.1 1112 0.0
Ahg474031 jgi|Araly1|474031|fgenesh2_kg.1__3985__AT3G32904.1 599 1e-170
Ahg913458 jgi|Araly1|913458|Al_scaffold_0001_3712 333 1e-90
Ahg949069 jgi|Araly1|949069|scaffold_800956.1 316 1e-85
Ahg949467 jgi|Araly1|949467|scaffold_801354.1 303 1e-81
Ahg355720 jgi|Araly1|355720|fgenesh1_pg.C_scaffold_7002893 180 2e-44
> Ahg493748 jgi|Araly1|493748|fgenesh2_kg.7__3181__AT3G32904.1
Length=803
Score = 1112 bits (602), Expect = 0.0
Identities = 738/805 (92%), Gaps = 4/805 (0%)
Strand=Plus/Plus
Query 1 ATGGGAAATTACCGTTTCAAAGATCCTACAATTCTTGGTAGAGAATTTATCCTTGACAAG 60
||||| ||||| ||||||||| |||||||| |||||||||||||||||| ||||||||
Sbjct 1 ATGGGCAATTATCGTTTCAAATATCCTACACCCCTTGGTAGAGAATTTATCGTTGACAAG 60
Query 61 TTTAACAAGGAGTTTAATCTTAATATAAATTATCAATTCGTCAAAGAAAAACTTGATCAA 120
|||||||||||||||||||| || ||||||||| ||| ||||||||||||||||||||
Sbjct 61 TTTAACAAGGAGTTTAATCTAAACGTAAATTATCGGTTCTTCAAAGAAAAACTTGATCAA 120
Query 121 CTAAAAAGAAAGTACAAGAAGTACAAGGAGCTTATGAAAAACTCCACGGGCATTTCGGTT 180
|||||||||||||||||||| |||||| | ||||||||| | ||||||||||| ||||||
Sbjct 121 CTAAAAAGAAAGTACAAGAAATACAAGCATCTTATGAAAGATTCCACGGGCATCTCGGTT 180
Query 181 GATACTACTACATCTGTGATATCAACATCTAACTCATGGTGGCAAGAGCGTGAACCTCAA 240
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 GATACTACTACATCTGTGATATCGGCATCTAACTCATGGTGGCAAGAGCGTGAACCTCAA 240
Query 241 TTCTCTGTGAACCAAAGAAGAGAACAGTTG-GTGAATGATGGTTTGGACAATGATGAAGG 299
||||||||||||||||||||||||||| | | ||||||| || |||| |||||||||||
Sbjct 241 TTCTCTGTGAACCAAAGAAGAGAACAGCTAAG-GAATGATTGTCTGGATAATGATGAAGG 299
Query 300 TCATGTATACTTTGAAACATATGATGGTGATATGCAAGACAGTCAAGTTCTTGAGACACA 359
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 TCATATATACTTTGAAACATATGATGGTGATATGCAAGACAGTCAAGTTCCTGAGACACA 359
Query 360 AGAAAACGAAGAGATTCCCACGTCTAGAATTCAACAACGAGGTGGACTAAGGCGTGGAAG 419
|||||| ||||||||||| || || |||| |||||||||||||||| |||||||||||||
Sbjct 360 AGAAAATGAAGAGATTCCTACATCCAGAACTCAACAACGAGGTGGAGTAAGGCGTGGAAG 419
Query 420 TAGTTCGCAAAGAGGTGCAGGAAACTTCCAAATTTCTACCAGGATTGGTTCACGAGGAAG 479
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 420 TAGTTCGCAAAGAGGTGCAGGAAACTCCCAAATTTCTACCAGGAGTGGTTCACGAGGAAG 479
Query 480 TCGTAGAAAACAATCATTTGAGACAACTCTAACAGATACAATAACTGGCTTAAGAGAGTT 539
|||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 480 GCGTAGAAAACAATCATTTGAAACAACCCTAACAGATACAATAACTGGCTTCAGAGAGTT 539
Query 540 TCAGCGCCAAAGTTTACAACAGATGCGCCCGAATT-GTTTTGACAAAGATGATTACAACA 598
||||||||||| ||||||||| |||||||||||| ||||| || ||| |||||||| |
Sbjct 540 TCAGCGCCAAAAATTACAACAGTTGCGCCCGAATTTGTTTT-ACGAAGCTGATTACAGCG 598
Query 599 AATTCGATATGGCTATGAAGTTATTTGAATCAATGAACCTTCCGAATGACACTGATTTTT 658
|||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 599 AATTCGATATGGCTGTGAAGATATTTGAATCAATGGACCTTTCGAATGACACTGATTTTT 658
Query 659 ATTGGGCTTGCATTCATGCATTTAAGGCAGAAATTTTTTGGCGTAAGTACTTCATTAATA 718
||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||| |||
Sbjct 659 ATTGGGCTTGCATGCATGCATTTAAGGAAGAAAGATTTTGGCGTAAGTACTTCATTGATA 718
Query 719 GAGCTGAAAGAACCGTCGAAGATAATCTGAAATTTTTACAAGCTCTTACTAGAGATACAC 778
|||||||||||||| |||||||||| |||||||||||||||||||||||| || ||||||
Sbjct 719 GAGCTGAAAGAACCATCGAAGATAAGCTGAAATTTTTACAAGCTCTTACTGGATATACAC 778
Query 779 GAGATAATGAATATGTGGGAAAACG 803
| || | ||||||||||||||||||
Sbjct 779 GGGACAGTGAATATGTGGGAAAACG 803
> Ahg474031 jgi|Araly1|474031|fgenesh2_kg.1__3985__AT3G32904.1
Length=865
Score = 599 bits (324), Expect = 1e-170
Identities = 393/427 (92%), Gaps = 2/427 (0%)
Strand=Plus/Plus
Query 1 ATGGGAAATTACCGTTTCAAAGATCCTACAATTCTTGGTAGAGAATTTATCCTTGACAAG 60
||||| ||||| |||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1 ATGGGCAATTATCGTTTCAAAGATCCTACACCCCTTGGTAGAGAATTTATCGTTGACAAG 60
Query 61 TTTAACAAGGAGTTTAATCTTAATATAAATTATCAATTCGTCAAAGAAAAACTTGATCAA 120
|||||||||||||||||||| || |||||||||| ||| ||||||||||||||||||||
Sbjct 61 TTTAACAAGGAGTTTAATCTAAACATAAATTATCGGTTCTTCAAAGAAAAACTTGATCAA 120
Query 121 CTAAAAAGAAAGTACAAGAAGTACAAGGAGCTTATGAAAAACTCCACGGGCATTTCGGTT 180
||||||||||| |||||||| |||||| | ||||||||| | ||||||||||| ||||||
Sbjct 121 CTAAAAAGAAAATACAAGAAATACAAGCATCTTATGAAAGATTCCACGGGCATCTCGGTT 180
Query 181 GATACTACTACATCTGTGATATCAACATCTAACTCATGGTGGCAAGAGCGTGAACCTCAA 240
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 181 GATACTACTACATCTGTGATATCGGCATCTAACTCATGGTGGAAAGAGCGTGAACCTCAA 240
Query 241 TTCTCTGTGAACCAAAGAAGAGAACAGTTG-GTGAATGATGGTTTGGACAATGATGAAGG 299
||||||||||||||||||||||||||| || | |||||||||| |||| |||||||||||
Sbjct 241 TTCTCTGTGAACCAAAGAAGAGAACAGCTGAG-GAATGATGGTCTGGATAATGATGAAGG 299
Query 300 TCATGTATACTTTGAAACATATGATGGTGATATGCAAGACAGTCAAGTTCTTGAGACACA 359
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 TCATGTATACTTTGAAACATATGATGGTGATATGCAAGACAGTCAAGTTCCTGAGACACA 359
Query 360 AGAAAACGAAGAGATTCCCACGTCTAGAATTCAACAACGAGGTGGACTAAGGCGTGGAAG 419
|||||| ||||||||||| || || ||||||||||||||||||||| | ||||| |||||
Sbjct 360 AGAAAATGAAGAGATTCCTACATCCAGAATTCAACAACGAGGTGGAGTCAGGCGGGGAAG 419
Query 420 TAGTTCG 426
|||||||
Sbjct 420 TAGTTCG 426
Score = 595 bits (322), Expect = 2e-169
Identities = 389/422 (92%), Gaps = 2/422 (0%)
Strand=Plus/Plus
Query 465 TGGTTCACGAGGAAGTCGTAGAAAACAATCATTTGAGACAACTCTAACAGATACAATAAC 524
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 429 TGGATCACGAGGAAGTCGTAGAAAACAATCATTTGAAACAACCCTAACAGATACAATAAC 488
Query 525 TGGCTTAAGAGAGTTTCAGCGCCAAAGTTTACAACAGATGCGCCCGAATTGTTTTGACAA 584
|||||| ||||||||||| |||||||||||||||||| |||||||||||| ||||||| |
Sbjct 489 TGGCTTCAGAGAGTTTCAACGCCAAAGTTTACAACAGTTGCGCCCGAATTTTTTTGACGA 548
Query 585 AGATGATTACAACAAATTCGATATGGCTATGAAGTTATTTGAATCAATGAACCTTCCGAA 644
| |||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 549 GGCTGATTACAACGAATTCGATATGGCTGTGAAGATATTTGAATCAATGGCCCTTCCGAA 608
Query 645 TGACACTGATTTTTATTGGGCTTGCATTCATGCATTTAAGGCAGAAATTTTTTGGCGTAA 704
||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||
Sbjct 609 TGACACTGATTTTTATTGGGCTTGCATGCATGCATTTAAGGAAGAAAGATTTTGGCGTAA 668
Query 705 GTACTTCATTAATAGAGCTGAAAGAACCGTCGAAGATAATCTGAAATTTTTACAAGCTCT 764
|||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 669 GTACTTCATTGATAGAGCTGAAAGAACCATCGAAGATAAGCTGAAATTTTTACAAGCTCT 728
Query 765 TACTAGAGATACAC-GAGATAATGAATATGTGGGAAAACGTCAATGGGGTCATGGTTTTC 823
|||| || |||||| | || | ||||||||||||||||||||||||||||| |||| |||
Sbjct 729 TACTGGATATACACCG-GACAGTGAATATGTGGGAAAACGTCAATGGGGTCCTGGTATTC 787
Query 824 AACAATGGGGAACACCTCCTACTGCTCCGCAATGGAATTCACCTTCAAATGTTCCACAAT 883
||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||
Sbjct 788 AACAATGGGGAACACCTCCAACTGGTCCGCAATGGAATTCACCTTCAAATGTCCCACAAT 847
Query 884 GG 885
||
Sbjct 848 GG 849
> Ahg913458 jgi|Araly1|913458|Al_scaffold_0001_3712
Length=351
Score = 333 bits (180), Expect = 1e-90
Identities = 207/220 (94%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 154 ATGAAAAACTCCACGGGCATTTCGGTTGATACTACTACATCTGTGATATCAACATCTAAC 213
|||||| | ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGAAAGATTCCACGGGCATCTCGGTTGATACTACTACATCTGTGATATCGGCATCTAAC 60
Query 214 TCATGGTGGCAAGAGCGTGAACCTCAATTCTCTGTGAACCAAAGAAGAGAACAGTTGGTG 273
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 61 TCATGGTGGCAAGAGCGTGAACCTCAATTCTCTGTGAACCAAAGAAGAGAACAGCT-GAG 119
Query 274 -AATGATGGTTTGGACAATGATGAAGGTCATGTATACTTTGAAACATATGATGGTGATAT 332
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CAATGATGGTCTGGATAATGATGAAGGTCATGTATACTTTGAAACATATGATGGTGATAT 179
Query 333 GCAAGACAGTCAAGTTCTTGAGACACAAGAAAACGAAGAG 372
||||||||||||||||| ||||||||||||||| ||||||
Sbjct 180 GCAAGACAGTCAAGTTCCTGAGACACAAGAAAATGAAGAG 219
> Ahg949069 jgi|Araly1|949069|scaffold_800956.1
Length=1823
Score = 316 bits (171), Expect = 1e-85
Identities = 213/234 (91%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 1 ATGGGAAATTACCGTTTCAAAGATCCTACAATTCTTGGTAGAGAATTTATCCTTGACAAG 60
||||| ||||| |||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 22 ATGGGCAATTATCGTTTCAAAGATCCTACACCCCTTGGTAGAGAATTTATCGTTGACAAG 81
Query 61 TTTAACAAGGAGTTTAATCTTAATATAAATTATCAATTCGTCAAAGAAAAACTTGATCAA 120
|||||||||||||||||||| || |||||||||| ||| ||||||||||||||||||||
Sbjct 82 TTTAACAAGGAGTTTAATCTAAACATAAATTATCGGTTCTTCAAAGAAAAACTTGATCAA 141
Query 121 CTAAAAAGAAAGTACAAGAAGTACAAGGAGCTTATGAAAAACTCCACGGGCATTTCGGTT 180
||||||||||| |||||||| |||||| | ||||||||| | ||||||||||| ||||||
Sbjct 142 CTAAAAAGAAAATACAAGAAATACAAGCATCTTATGAAAGATTCCACGGGCATCTCGGTT 201
Query 181 GATACTACTACATCTGTGATATCAACATCTAACTCATGGTGGCAAGAGCGTGAA 234
||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 202 GATACTACTACATCTGTGATATCGGCATCTAACTCATGGTGGAAAGAGCGTGAA 255
Score = 307 bits (166), Expect = 9e-83
Identities = 190/202 (94%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 371 AGATTCCCACGTCTAGAATTCAACAACGAGGTGGACTAAGGCGTGGAAGTAGTTCGCAAA 430
||||||| || || ||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 581 AGATTCCTACATCCAGAATTCAACAACGAGGTGGAGTCAGGCGTGGAAGTAGTTCGCAAA 640
Query 431 GAGGTGCAGGAAACTTCCAAATTTCTACCAGGATTGGTTCACGAGGAAGTCGTAGAAAAC 490
||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 641 GAGGTGCAGGAAACTCCCAAATTTCTACCAGGAGTGGTTCACGAGGAAGCCGTAGAAAAC 700
Query 491 AATCATTTGAGACAACTCTAACAGATACAATAACTGGCTTAAGAGAGTTTCAGCGCCAAA 550
|||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 701 AATCATTTGAAACAACCCTAACAGATACAATAACTGGCTTCAGAGAGTTTCAGCGCCAAA 760
Query 551 GTTTACAACAGATGCGCCCGAA 572
||||||||||| ||||||||||
Sbjct 761 GTTTACAACAGTTGCGCCCGAA 782
Score = 211 bits (114), Expect = 7e-54
Identities = 131/139 (94%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 235 CCTCAATTCTCTGTGAACCAAAGAAGAGAACAGTTG-GTGAATGATGGTTTGGACAATGA 293
||||||||||||||||||||||||||||||||| || | |||||||||| |||| |||||
Sbjct 349 CCTCAATTCTCTGTGAACCAAAGAAGAGAACAGCTGAG-GAATGATGGTCTGGATAATGA 407
Query 294 TGAAGGTCATGTATACTTTGAAACATATGATGGTGATATGCAAGACAGTCAAGTTCTTGA 353
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 408 TGAAGGTCATGTATACTTTGAAACATATGATGGTGATATGCAAGACAGTCAAGTTCCTGA 467
Query 354 GACACAAGAAAACGAAGAG 372
| |||||||||| ||||||
Sbjct 468 GCCACAAGAAAATGAAGAG 486
> Ahg949467 jgi|Araly1|949467|scaffold_801354.1
Length=443
Score = 303 bits (164), Expect = 1e-81
Identities = 202/221 (91%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 14 GTTTCAAAGATCCTACAATTCTTGGTAGAGAATTTATCCTTGACAAGTTTAACAAGGAGT 73
||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||
Sbjct 169 GTTTCAAAGATCCTACACCTCTTGGTAGAGAATTTATCGTTGATAAGTTTAACAAGGAGT 228
Query 74 TTAATCTTAATATAAATTATCAATTCGTCAAAGAAAAACTTGATCAACTAAAAAGAAAGT 133
|||||||||| |||||||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct 229 TTAATCTTAACATAAATTATCGGTTCTTCAAAGAAAATCTTGATCAACTAAAAAGAAAGT 288
Query 134 ACAAGAAGTACAAGGAGCTTATGAAAAACTCCACGGGCATTTCGGTTGATACTACTACAT 193
||||||||||||| | || |||||||| | ||||||||| |||||||||||||||||||
Sbjct 289 GCAAGAAGTACAAGCATCTGATGAAAAATTTCACGGGCATCTCGGTTGATACTACTACAT 348
Query 194 CTGTGATATCAACATCTAACTCATGGTGGCAAGAGCGTGAA 234
|||||||||| ||||||||||||||||||||||| |||||
Sbjct 349 CTGTGATATCGGCATCTAACTCATGGTGGCAAGAGAGTGAA 389
> Ahg355720 jgi|Araly1|355720|fgenesh1_pg.C_scaffold_7002893
Length=408
Score = 180 bits (97), Expect = 2e-44
Identities = 161/192 (84%), Gaps = 3/192 (2%)
Strand=Plus/Minus
Query 803 GTCAATGGGGTCATGGTTTTCAACAATGGGGAACACCTCCTACTGCTCCGCAATGGAATT 862
|||||||||||| |||| |||||||||||| ||||||||| |||||||||||||||||||
Sbjct 336 GTCAATGGGGTCCTGGTATTCAACAATGGGAAACACCTCCAACTGCTCCGCAATGGAATT 277
Query 863 CACCTTCAAATGTTCCACAATGGACAATTCCACCAACTACACCACAATGGGGTACACCTT 922
||||||||||||| ||||||||| ||| || |||| | |||||||||||||| |||||
Sbjct 276 CACCTTCAAATGTCCCACAATGGGGAATACCTCCAATTGCACCACAATGGGGTCCACCTC 217
Query 923 CTAGTA-TGC-CG-CAATGGAGTTCATCTCCAACTGCTCCGCAATTGAGTTCACCTCCAA 979
|| | ||| | |||||| | || ||||||||||||| |||| || ||||||| |||
Sbjct 216 CTTCAAATGCTCCACAATGGGGAACACCTCCAACTGCTCCTCAATAGAATTCACCTTCAA 157
Query 980 CTGCTCCGCAAT 991
||| || ||||
Sbjct 156 ATGCCCCACAAT 145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36902983656
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5