BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G32930.1
Length=972
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484754 jgi|Araly1|484754|fgenesh2_kg.5__746__AT3G32930.1 1321 0.0
> Ahg484754 jgi|Araly1|484754|fgenesh2_kg.5__746__AT3G32930.1
Length=840
Score = 1321 bits (715), Expect = 0.0
Identities = 802/844 (95%), Gaps = 5/844 (1%)
Strand=Plus/Plus
Query 49 AAACTCAGCCGCCCAGATCAA-AAACAACAATGCAACTCTCACTGGTTCAAGTCTCTTCA 107
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1 AAACTCAGCCGCCCAGATCAAGAAACAACAATGCAAGTCTCACTGGTTCAAGTCTCTTCA 60
Query 108 GTGTCCAACTTCAGATCCCAATCAACGATTCCTACTCTCTCCAACTCAAACCCATCTTGT 167
|||||| |||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 61 GTGTCCTACTTCAGATCTCAATCAACGATTCCTACTCTCTCCAACTCCAACCCCTCTTGT 120
Query 168 TTACTTCTTCAAAAGTCCATCTTTCCTGGGTCCAAGTTAACCCTCCATCGAATTTTTCGT 227
|| ||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 TTCCTTCTGCCAAAGTCCATCTTTCCTGGGTCCAAGTTAACCCTCCATCGATTTTTTCGT 180
Query 228 TATCCGAAGAAAATCTCAAATGGCTCTACTCGTGCTTCACTGCTTGAGACCCCTATCTTA 287
||||| ||||||||||||||||| ||| |||||||||| ||||||||||||||| |||||
Sbjct 181 TATCCCAAGAAAATCTCAAATGGGTCTGCTCGTGCTTCTCTGCTTGAGACCCCTGTCTTA 240
Query 288 TGGGCTGGTCGGATTTGTGTCTTCTACGCTCTCGTGAAAGCTGGCTTTGCTGGATCCAAG 347
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 TGGGCTGGTCGGATTTGTGTCTTCTACGCTCTCGTGAAAGCTGGTTTTGCTGGATCCAAG 300
Query 348 TCTAACCCTATCGTTTCTGGTTTGGATACTGGTGGTGTTGATGTTGAATATGATGATGGT 407
|||||||||||||||||||||||||| | ||||||||||||||||| | | |||||||||
Sbjct 301 TCTAACCCTATCGTTTCTGGTTTGGAAAGTGGTGGTGTTGATGTTG-A-A-GATGATGGT 357
Query 408 GCTGATCTTGGTTTCTCAAAGTGGCTTCAGAACATTAAGGGCAACAAACCAGATAAGGAT 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GCTGATCTTGGTTTCTCAAAGTGGCTTCAGAACATTAAGGGCAACAAACCAGATAAGGAT 417
Query 468 GCAGCTGATAAGAGGAAGCTAGTGAGCAAATGGCACCCAACGACAAAGGGAACACTTAGA 527
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 418 GCAGCTGATAAGAGGAAGCTAGTGAGCAAATGGCACCCGACGACAAAGGGAACACTTAGA 477
Query 528 AGGAACTACAGGATACCTTCGAAAGCCGAAGGAAACCGTTTGCTTAAAGCCATTGCGTCT 587
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 478 AGGAACTACAGGATACCTTCCAAAGGCGAAGGAAACCGTTTGCTTAAAGCCATTGCGTCT 537
Query 588 CTTCTCTCAGATGATGATCATTTTAGAGATGCAACATCTCACAAGGGTTGTCAAATACGG 647
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 538 CTTCTCTCAGATGATGATCATTTTAGGGATGCAACATCTCACAAGGGTTGTCAAATTCGG 597
Query 648 AGGGAGAGTGCGCACGGTCAAAGCGTATGTTGCAACAATGTGAGAGCTCTGTTTGATGAG 707
||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 598 CGGGAGAGTGCGCATGGCCAAAGTGTATGTTGCAACAATGTGAGAGCTCTGTTTGATGAG 657
Query 708 TTACCGACGCCACATTTGGTGGTGGAGATCACACCTTTTCCAGCCGGACCGCTCACAGAG 767
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 658 TTACCGACGCCACATTTGGTGGTGGAGATCACACCTTTTCCAGCCGGACCGCTTACAGAG 717
Query 768 AATGATTACCTTAAGGCTGAGAAGCTGGAGAGGATTCTTAGGTCTGGCGCCAACATTTGA 827
||||||||||||||||| || |||||||| |||||||||||||| ||| |||||||||||
Sbjct 718 AATGATTACCTTAAGGCCGAAAAGCTGGAAAGGATTCTTAGGTCAGGCCCCAACATTTGA 777
Query 828 ACCCTCTTGGCAGTGTTTTACTATGTGTCAAAATCTAGAACCTGTACATACTCTACGATG 887
|| |||| ||||||||| |||||| ||||||||||||||| |||||||||||||||| ||
Sbjct 778 ACTCTCT-GGCAGTGTTCTACTATATGTCAAAATCTAGAATCTGTACATACTCTACGGTG 836
Query 888 TCTT 891
||||
Sbjct 837 TCTT 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36102402399
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5