BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G32940.1
Length=2125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484755 jgi|Araly1|484755|fgenesh2_kg.5__747__AT3G32940.1 1820 0.0
> Ahg484755 jgi|Araly1|484755|fgenesh2_kg.5__747__AT3G32940.1
Length=1974
Score = 1820 bits (985), Expect = 0.0
Identities = 1261/1392 (91%), Gaps = 27/1392 (2%)
Strand=Plus/Plus
Query 35 AGGa-aaaaaaacaaaaaGCTCTACGGTATTTCTCTCAAACCCTTAACGACGAGAGCCGT 93
|||| |||| || || |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 AGGATAAAAGAA-AATAAGCTCTACGGTATTTCTCTCAAACCCTTAACGACGAGAGCCAT 59
Query 94 CGCTAA-TCGACGACGTAATTCTTAGGTCGAACGGAAAACTCCGCCGCTACGTTTAGT-C 151
|||||| | |||||||| | |||||||||||| | ||||||||||||||||| ||| | |
Sbjct 60 CGCTAATTTGACGACGTGACTCTTAGGTCGAAAGAAAAACTCCGCCGCTACG-TTACTCC 118
Query 152 GAAGAGATGACTTCTACTTCCGCTGCGAAGATCTCAATGTTTGGTGCCAAATCTGGATTC 211
| ||||||||| |||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 119 G-AGAGATGACATCTACTAACGGTGCGAAGATCTCAATGTTTGGTGCCAAATCTGGATTT 177
Query 212 GTTATCCCTAAAAACAAACTATCTGGATCATTGATCCCAATTTTTCAACGTGGAAACAAA 271
|| ||||||||||||||||| |||||||||||| |||| |||||||||||||| |||| |
Sbjct 178 GTGATCCCTAAAAACAAACTCTCTGGATCATTGGTCCCGATTTTTCAACGTGGGAACACA 237
Query 272 ACCCTAGGAAGTGCC---GATTCAG-ACACTGGACCTCCGTCGAAGCTGGGGAAGAAAAG 327
||||||||| ||||| ||| | | | ||||||| ||| |||||||||| |||||| ||
Sbjct 238 ACCCTAGGAGGTGCCAATGATAC-GAATACTGGACTTCCTTCGAAGCTGGTGAAGAAGAG 296
Query 328 AAAGACTAAATGGGCTCCTGATTTGTCACAAGATATTGCAGTCAAGAAATGTCGATTTTT 387
||||||||| |||| ||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 297 AAAGACTAATTGGGGTCCTGATTTGTCACAAGATATTGGAGTCAAGAAAGGTCGATTTTT 356
Query 388 AGCTTACCAGAAACGCGTGGATCAAATTACACAGCGATTGGAATCTGGAACTCTTGAAGT 447
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 357 AGCTTACCAGAAACGCCTGGATCAAATTACACAGCGATTGGAATCGGGAACTCTTGAAGT 416
Query 448 GGAGACTAAT--AGAACTGACCTGGAGTTTGAAAAACGCGAAGCAATTGGGGAGATACTC 505
|||||||||| ||||| | || || ||||||||||||||||||||||||||||||||
Sbjct 417 GGAGACTAATAGAGAAC--AGCTTGAAATTGAAAAACGCGAAGCAATTGGGGAGATACTC 474
Query 506 GAGTTGAATCCGAGGTACAAGGCTCCACCTGATTATAAGCCATTGCTGAAAGAAGCTAGA 565
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GAGTTGAATCCGAGGTACAAGGCTCCACCTGATTATAAGCCATTGCTGAAAGAAGCTAGG 534
Query 566 TTGCCGATCGATGTTAAAGAACATTCTGATTTCAGCTTTCTAAGTCTCATATTTGGTTCC 625
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TTGCCGATCGACGTAAAAGAACATTCTGATTTCAGCTTTCTAAGTCTCATATTTGGTTCC 594
Query 626 CAAGGTGATACTCAAAAGCGGCTCGAAAAAGAGACTGGAGCTAAAGTACAAATTTTCGGT 685
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 595 CAAGGTGATACTCAAAAGCGGCTCGAAAAAGAGACTGGAGCCAAAGTACAAATTTTTGGT 654
Query 686 ACTAAAACAGGAGGAGAGAAGGTTGAACTCTCTCCTTCGGATGAAAATGAGATCCAGAAG 745
|||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| |
Sbjct 655 ACTAAAACAGGAGGAGAGAAGGTTGAACTCTCTCCTTCAGATGAAAATAAAATCCAGACG 714
Query 746 TCATGGCAAGAGTTATATTTTCAGATATCATCTGACACTTACGAAAAAGTGGATGCAGCT 805
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 715 TCGTGGCAAGAGTTATATTTTCAAATATCATCTGACACTTACGAAAAAGTGGATGCAGCT 774
Query 806 ATTGCTGTAGTTGAGCTACTTATGTCTTCAGTGTCTGGAAATACAGGAGCTGGTGCTGCT 865
||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 775 ATTGCTGTAATTGAGCTACTTATCTCTTCAGTGTCTGGAAATACAGAAGCTGGTGCTGCT 834
Query 866 CCTCCATCTTCCATATCTGAA-ATTATTTCAACTATTCCAGGCAACAGCATCGCAACT-G 923
||||||||||||| ||||| | | ||||||||||||| || ||||||| | || |
Sbjct 835 CCTCCATCTTCCAGATCTGGAGAG-ATTTCAACTATTCTAGAAAACAGCAACATG-CTTG 892
Query 924 CTAC-AGCCCCGACCTCTGAACGGAC-AACTGACCATAGCCAAGTCCTACAGCATGGTTC 981
|||| | ||| || |||||||| || ||||| ||| |||||||||| ||||||||||||
Sbjct 893 CTACCAACCC-GAGCTCTGAACA-ACCAACTGCCCAAAGCCAAGTCCAACAGCATGGTTC 950
Query 982 CTCATTTCATTTGTCTTCAAATCAAGCTCCACTTCATCCACCTCTTGAACACTTTGTTTC 1041
||| |||| |||| ||||||||||||| || |||||||| ||||| ||| || || |||
Sbjct 951 CTCCTTTCTTTTGGATTCAAATCAAGCTACATTTCATCCATCTCTTAAACCCTATGCTTC 1010
Query 1042 AGGTCTTGGTTATAATATCCAGGAGCAAGAACTGCCTAAAAATTCT-ATGAATCTCAATC 1100
||||||||| |||| ||||||||| ||||||||||||| |||| | ||||| |||||||
Sbjct 1011 AGGTCTTGGGTATAGTATCCAGGAACAAGAACTGCCTACCAATT-TGATGAACCTCAATC 1069
Query 1101 CTCTTTTTGCTCAGCAA-CTACTTCCAGTTCCTCATGACACATCATTACCTCCTGGTTCT 1159
||||| |||||||||| | |||||||||||||||||||||||||||||||| |||||||
Sbjct 1070 ATCTTTCTGCTCAGCAAAC-ACTTCCAGTTCCTCATGACACATCATTACCTCTTGGTTCT 1128
Query 1160 CACGTCCCTCGACCACCGGATTCGTTCCCTTTTAGCCTTTCCAACACACCAAGGACCTAT 1219
||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1129 CACGTCCCTCGACCACCAGATTCGTTCTCTTTTAGCCTTTCCAACACACCAAGGGCCTAT 1188
Query 1220 TCTGTGACTTTGCCTCCATATTCTGGCAGTCAGATACAACCAATAGGACCACGTTCTACT 1279
||||||||| || ||| |||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1189 TCTGTGACTGCGCATCCTTATTCTTGCAGTCAGATACAACCAATAGGACCAGGTTCTACT 1248
Query 1280 GTGAGGCCGTCGACCCTATTTACTTTCCATCCTGTACATAGACCAACACTGTTACCAGAC 1339
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1249 ATGAGGCCGTCGACCCTATTTACTTTCCAACCTGTACATAGACCAACACTGTTGCCAGAC 1308
Query 1340 ATAGACCAATCAGTACGGCCTTTGGCTCCTAACTTCAGTCCACATCCTGTAGCTCATCAG 1399
|||| |||||||||||||||| ||||||||||||| ||||||||||| ||| ||||||||
Sbjct 1309 ATAGTCCAATCAGTACGGCCTCTGGCTCCTAACTTTAGTCCACATCCGGTACCTCATCAG 1368
Query 1400 CCAGGTACTGAA 1411
||||||||||||
Sbjct 1369 CCAGGTACTGAA 1380
Score = 730 bits (395), Expect = 0.0
Identities = 530/593 (89%), Gaps = 18/593 (3%)
Strand=Plus/Plus
Query 1449 TAGCAGAATATGGTTCTGGTAGTTCTCTGCGTCCCATGTCAGTGTCACCACATATTGCTA 1508
|||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1385 TAGCAGAATATGATTCTGGTGGTTCTCTGCGTCCCATGTCAGTGTCAGCACATATTGCTG 1444
Query 1509 GTAGGCCTGCTGGTC-TTGTTCCGGCTTATCCTCCCACAAATACTGCTTC-TAGGCCGTT 1566
||||||||||||| | ||||||| |||||||||||| |||| |||| || ||| || ||
Sbjct 1445 GTAGGCCTGCTGG-CATTGTTCCTACTTATCCTCCCATAAATCCTGC-TCATAGACCATT 1502
Query 1567 TCACGGGGATTTCGGTTACATACCACAACAATCAAACATTATTACCACACCACATATATC 1626
|||||||||||| |||| | | ||||||||| ||||| || || |||||||||||||||
Sbjct 1503 TCACGGGGATTTTGGTTTCCTTCCACAACAACCAAACGTTGTTTCCACACCACATATATA 1562
Query 1627 CCCTAGACCCAACTCACAATCAGCTCATCTCCCTCATCTGCCATTTCAAGCCTCTCAACA 1686
|||| ||||||||| |||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1563 TCCTATACCCAACTCTCAATCAGCTCATCTTCCTCATCTGGCATTTCAAGCCTCTCAACA 1622
Query 1687 TTTTGGGCAAAATTTCACAAGATCGCAGCACTTCGACAGGCAGATGGATCAACCCTTGAG 1746
||||| ||||||| ||||||||| || ||||||| ||||||||||||||| ||||||||
Sbjct 1623 TTTTGAGCAAAATCACACAAGATCACAACACTTCGGCAGGCAGATGGATCATCCCTTGAG 1682
Query 1747 CCACCCATCTGCACCATTTCATGGTAAC-GCGAGATCA---AACGT-C-G------G-AC 1793
|||||||||||||||||||||||||| | |||||||| ||| | | | | ||
Sbjct 1683 CCACCCATCTGCACCATTTCATGGTA-CTGCGAGATCTTCCAACTTGCAGAACTTTGGAC 1741
Query 1794 CTCCATTGTCTCAGATGATGCCTAGAAACTTCCCTGGAGCTCAATTCCCGCAGCATTCTG 1853
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 1742 CTCCATTGTCTCAGATGATGCCTAGGAACTTCCCTGGGGCTCAATTCCCGCAGCAGTCTG 1801
Query 1854 CTCATTTCCCTCCAAGACCAGTGTTTCATCATGATAACCTGATACCGCGTGGCCAGCCAC 1913
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1802 CTCATTTCCCTCCAAGACCAGTGTTTCATCATGATAACCTGATACCACGTGGCCAACCAC 1861
Query 1914 AGATTCGCCAACGGTTCAACTCTGGTGTCCATCAAGTATATGACCCTTTTTCACCTAGTG 1973
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1862 AGATTCGCCACCGGTTCAACTCTGGTGTCCATCAAGTATATGACCCGTTTTCACCTAGTG 1921
Query 1974 ATGGTTAATTCAGTATTGTGTTTTCAATAGCCATGTTTCTGCAATAGGGACTG 2026
||| ||||| ||||| ||||||||||||||||| ||||||||| |||||||||
Sbjct 1922 ATGCTTAATACAGTAGTGTGTTTTCAATAGCCACGTTTCTGCATTAGGGACTG 1974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79951424255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5