BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G32960.1
Length=645
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950015 jgi|Araly1|950015|scaffold_801902.1 438 2e-122
Ahg355776 jgi|Araly1|355776|fgenesh1_pg.C_scaffold_7002949 433 9e-121
Ahg337271 jgi|Araly1|337271|fgenesh1_pg.C_scaffold_1003836 281 3e-75
Ahg889840 jgi|Araly1|889840|Al_scaffold_0007_1826 276 2e-73
Ahg344928 jgi|Araly1|344928|fgenesh1_pg.C_scaffold_4001270 276 2e-73
> Ahg950015 jgi|Araly1|950015|scaffold_801902.1
Length=640
Score = 438 bits (237), Expect = 2e-122
Identities = 289/314 (92%), Gaps = 4/314 (1%)
Strand=Plus/Plus
Query 331 AAGAACGTGGCATCAAACATGATGAAGCCAAAGCATGATATTCATGGATTTCCTCTAGCA 390
||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 159 AAGAACGTGGCATCATACATGATGAAGACAAAGTATGATATTCATGGATTTCCTCTAGCA 218
Query 391 CTACACATTTGGATTCTTGAGTCTATTCCAATGCTACAAACAACCTACAACCGAATCAGT 450
|||||||||||||||||||||||||||||||||||||||||| |||||| | | ||||||
Sbjct 219 CTACACATTTGGATTCTTGAGTCTATTCCAATGCTACAAACAGCCTACAGCTGCATCAGT 278
Query 451 TTAATAGAGAGGCCTACTGCATTCTTGTGTGAGAAATACACGAGCCTACCATCACCACAA 510
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 279 TTAATAGAGAGGCCGACTGCATTCTTGTGTGAGAAATACACGAGCTTACCATCACCACAA 338
Query 511 CTTTCTCAAATACAGAACATTGAAGCATCATA-TCATCCGAAGGTGTTTTTCATCTTACC 569
||||||||||||||||| ||||||||||| || ||||| ||| || |||| |||||||||
Sbjct 339 CTTTCTCAAATACAGAATATTGAAGCATC-TAATCATCTGAATGTATTTTGCATCTTACC 397
Query 570 GTCAATACCTGATGATCTTGAAGATAAAGTTTCATTGGAAGACGAAGATGATCCAGAATT 629
||||||||| |||||| |||||||| ||| |||||||||||||||||||||||||||||
Sbjct 398 TTCAATACCTAATGATCCTGAAGATACAGTCTCATTGGAAGACGAAGATGATCCAGAATT 457
Query 630 G-GATATGCTGGTC 642
| | ||||||||
Sbjct 458 AAG-TCTGCTGGTC 470
> Ahg355776 jgi|Araly1|355776|fgenesh1_pg.C_scaffold_7002949
Length=444
Score = 433 bits (234), Expect = 9e-121
Identities = 276/296 (93%), Gaps = 4/296 (1%)
Strand=Plus/Plus
Query 349 ATGATGAAGCCAAAGCATGATATTCATGGATTTCCTCTAGCACTACACATTTGGATTCTT 408
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATGAAGACAAAGTATGATATTCATGGATTTCCTCTAGCACTACACATTTGGATTCTT 60
Query 409 GAGTCTATTCCAATGCTACAAACAACCTACAACCGAATCAGTTTAATAGAGAGGCCTACT 468
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||
Sbjct 61 GAGTCTATTCCAATGCTACAAACAGCCTACAGCCGAATCAGTTTAATAGAGAGGCCGACT 120
Query 469 GCATTCTTGTGTGAGAAATACACGAGCCTACCATCACCACAACTTTCTCAAATACAGAAC 528
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 GCATTCTTGTGTGAGAAATACACGAGCTTACCATCACCACAACTTTCTCAAATACAGAAT 180
Query 529 ATTGAAGCATCATA-TCATCCGAAGGTGTTTTTCATCTTACCGTCAATACCTGATGATCT 587
||||||||||| || ||||| ||| || |||| ||||||||| ||||||||||||||||
Sbjct 181 ATTGAAGCATC-TAATCATCTGAATGTATTTTGCATCTTACCTTCAATACCTGATGATCC 239
Query 588 TGAAGATAAAGTTTCATTGGAAGACGAAGATGATCCAGAATT-GGATATGCTGGTC 642
|||||||||||||||| | ||||||||||||||||||||||| || | ||||||||
Sbjct 240 TGAAGATAAAGTTTCACTAGAAGACGAAGATGATCCAGAATTAGG-TCTGCTGGTC 294
> Ahg337271 jgi|Araly1|337271|fgenesh1_pg.C_scaffold_1003836
Length=345
Score = 281 bits (152), Expect = 3e-75
Identities = 200/223 (90%), Gaps = 4/223 (2%)
Strand=Plus/Plus
Query 422 TGCTACAAACAACCTACAACCGAATCAGTTTAATAGAGAGGCCTACTGCATTCTTGTGTG 481
||||||||||| |||||| |||||||||||||||||||| ||| ||||||||||||||||
Sbjct 59 TGCTACAAACAGCCTACAGCCGAATCAGTTTAATAGAGAAGCCGACTGCATTCTTGTGTG 118
Query 482 AGAAATACACGAGCCTACCATCACCACAACTTTCTCAAATACAGAACATTGAAGCATCAT 541
|||||||||||||| |||||||||| |||||||||||||||| ||| ||||||||||| |
Sbjct 119 AGAAATACACGAGCTTACCATCACCGCAACTTTCTCAAATACTGAATATTGAAGCATC-T 177
Query 542 -ATCATCCGAAGGTGTTTTTCATCTTACCGTCAATACCTGATGATCTTGAAGATAAAGTT 600
|||||| ||| || |||| ||||| ||| |||| ||||||||||| |||||||| ||||
Sbjct 178 AATCATCTGAATGTATTTTGCATCTCACCTTCAAAACCTGATGATCCTGAAGATATAGTT 237
Query 601 TCATTGGAAGACGAAGATGATCCAGAATTG-GATATGCTGGTC 642
||||||||||||||||||||||||||||| | | ||||||||
Sbjct 238 TCATTGGAAGACGAAGATGATCCAGAATTAAG-TCTGCTGGTC 279
> Ahg889840 jgi|Araly1|889840|Al_scaffold_0007_1826
Length=321
Score = 276 bits (149), Expect = 2e-73
Identities = 199/223 (89%), Gaps = 4/223 (2%)
Strand=Plus/Plus
Query 422 TGCTACAAACAACCTACAACCGAATCAGTTTAATAGAGAGGCCTACTGCATTCTTGTGTG 481
||||||||||| |||||| |||||||| ||||||||||| || ||||||||||||||||
Sbjct 59 TGCTACAAACAGCCTACAGCCGAATCAATTTAATAGAGAATCCGACTGCATTCTTGTGTG 118
Query 482 AGAAATACACGAGCCTACCATCACCACAACTTTCTCAAATACAGAACATTGAAGCATCAT 541
|||||||||||||| |||||||||| |||||||||||||||| ||| ||||||||||| |
Sbjct 119 AGAAATACACGAGCTTACCATCACCGCAACTTTCTCAAATACTGAATATTGAAGCATC-T 177
Query 542 -ATCATCCGAAGGTGTTTTTCATCTTACCGTCAATACCTGATGATCTTGAAGATAAAGTT 600
|||||| ||| || |||| ||||| ||| |||| ||||||||||| |||||||||||||
Sbjct 178 AATCATCTGAATGTATTTTGCATCTCACCTTCAAAACCTGATGATCCTGAAGATAAAGTT 237
Query 601 TCATTGGAAGACGAAGATGATCCAGAATTG-GATATGCTGGTC 642
||||||||||||||||||||||||||||| | | ||||||||
Sbjct 238 TCATTGGAAGACGAAGATGATCCAGAATTAAG-TCTGCTGGTC 279
> Ahg344928 jgi|Araly1|344928|fgenesh1_pg.C_scaffold_4001270
Length=345
Score = 276 bits (149), Expect = 2e-73
Identities = 188/207 (91%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 422 TGCTACAAACAACCTACAACCGAATCAGTTTAATAGAGAGGCCTACTGCATTCTTGTGTG 481
||||||||||| |||||| |||||||||||||||||||| ||| ||||||||||||||||
Sbjct 59 TGCTACAAACAGCCTACAGCCGAATCAGTTTAATAGAGAAGCCGACTGCATTCTTGTGTG 118
Query 482 AGAAATACACGAGCCTACCATCACCACAACTTTCTCAAATACAGAACATTGAAGCATCAT 541
|||||||||||||| |||||||||| ||||||||||| |||| ||| ||||||||||| |
Sbjct 119 AGAAATACACGAGCTTACCATCACCGCAACTTTCTCAGATACTGAATATTGAAGCATC-T 177
Query 542 -ATCATCCGAAGGTGTTTTTCATCTTACCGTCAATACCTGATGATCTTGAAGATAAAGTT 600
|||||| ||| || |||| ||||| ||| |||| ||||||||||| |||||||||||||
Sbjct 178 AATCATCTGAATGTATTTTGCATCTCACCTTCAAAACCTGATGATCCTGAAGATAAAGTT 237
Query 601 TCATTGGAAGACGAAGATGATCCAGAA 627
|||||||||||||||||||||||||||
Sbjct 238 TCATTGGAAGACGAAGATGATCCAGAA 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23636208540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5