BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G32980.1
Length=1414
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323056 jgi|Araly1|323056|fgenesh1_pm.C_scaffold_5000600 1688 0.0
Ahg485264 jgi|Araly1|485264|fgenesh2_kg.5__1256__AT3G49120.1 1055 0.0
Ahg485262 jgi|Araly1|485262|fgenesh2_kg.5__1254__AT3G49110.1 966 0.0
> Ahg323056 jgi|Araly1|323056|fgenesh1_pm.C_scaffold_5000600
Length=1059
Score = 1688 bits (914), Expect = 0.0
Identities = 1009/1056 (96%), Gaps = 2/1056 (0%)
Strand=Plus/Plus
Query 49 ATGAATTTCTCTTATTCTTCCTTGTCAACTTGGACAACCCTAATGACATTGGGTTGTCTT 108
|||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||
Sbjct 1 ATGAATTTCTCTTATTCTTCTTTGTCAACTTTGACAACCCTAATAACATTGGGTTGTCTT 60
Query 109 CTGCTTCATTCATCCATTTCCAGTGCTCAGCTAACCCCAACTTTCTATGACAATACATG- 167
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 CTGCTTCATTCATCCAATTCCAGTGCTCAGCTAACCCCAACCTTCTATGACAATACATGC 120
Query 168 TCCAAGCGTCTTTACCATCGTACGGGATACCATAGTAAACGAGCTAAGATCGGATCCTCG 227
|||| ||||||||||||||||||| | ||||| ||||||||||||||||| ||||||||
Sbjct 121 CCCAA-CGTCTTTACCATCGTACGGAACACCATCGTAAACGAGCTAAGATCAGATCCTCG 179
Query 228 TATCGCTGCAAGCATCCTTCGTCTTCACTTCCACGACTGTTTCGTCAATGGCTGTGATGC 287
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 TATCGCTGCAAGCATCCTTCGTCTTCACTTCCACGACTGCTTCGTCAATGGCTGTGATGC 239
Query 288 ATCGATCCTGTTAGACAACACAACATCCTTTCGAACAGAGAAAGATGCGGCTCCAAACGC 347
|||||| ||||||||||||||||||||||||| ||| |||||||| || |||||||||||
Sbjct 240 ATCGATTCTGTTAGACAACACAACATCCTTTCAAACTGAGAAAGACGCTGCTCCAAACGC 299
Query 348 AAACTCGGCTCGAGGATTTCCAGTGATCGATAGAATGAAAGCAGCAGTAGAGACAGCATG 407
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 AAACTCGGCTCGAGGATTTCCAGTGATTGATAGAATGAAAGCAGCAGTAGAGACAGCATG 359
Query 408 TCCAAGGACTGTTTCATGCGCAGATATACTTACCATCGCAGCTCAACAAGCTGTAAATTT 467
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 360 TCCAAGGACTGTTTCATGCGCAGATATACTTACCATCGCAGCTCAACAATCTGTAAATCT 419
Query 468 GGCAGGAGGTCCTTCTTGGAGGGTTCCTTTGGGGAGAAGAGATAGCTTACAAGCATTCTT 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGCAGGAGGTCCTTCTTGGAGGGTTCCTTTGGGGAGAAGAGATAGCTTACAAGCATTCTT 479
Query 528 TGCTCTCGCTAATACAAATCTTCCCGCTCCATTCTTCACTCTCCCACAACTTAAGGCCAG 587
||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 480 TGCTCTCGCTAATGCAAATCTTCCCGCTCCATTTTTCACGCTCCCACAACTTAAGGCTAG 539
Query 588 TTTTCAAAATGTTGGACTTGACCGTCCCTCTGATCTCGTTGCACTCTCTGGTGGTCACAC 647
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CTTTCAAAATGTTGGACTTAACCGTCCCTCTGATCTCGTTGCACTCTCTGGTGGTCACAC 599
Query 648 ATTTGGTAAAAACCAGTGCCAATTTATTATGGATAGACTATACAACTTTAGCAACACTGG 707
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 600 ATTTGGTAAAAACCAATGCCAATTTATTATGGATAGGCTATACAACTTTAGCAACACTGG 659
Query 708 TTTACCCGACCCTACTCTTAATACTACATACCTCCAGACACTTCGTGGACAATGTCCCCG 767
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 660 TTTACCCGACCCTACTCTTAATACTACATACCTCCAGATACTTCGTGGACAATGTCCCCG 719
Query 768 CAATGGTAACCAGACCGTCTTAGTTGATTTCGATCTACGCACACCGACGGTTTTTGACAA 827
|||||||| ||||||||||| || ||||||||| | || ||||||||||||||||||||
Sbjct 720 GAATGGTAATCAGACCGTCTTGGTCGATTTCGATTTTCGTACACCGACGGTTTTTGACAA 779
Query 828 TAAATACTATGTGAATCTGAAAGAGCTAAAGGGACTTATCCAGACGGATCAAGAGTTGTT 887
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 780 TAAATACTATGTGAATCTGAAAGAGCTAAAGGGACTTATCCAGACCGATCAAGAGTTGTT 839
Query 888 TTCCAGCCCTAATGCCACTGACACAATCCCCTTGGTGAGAGAATACGCTGATGGCACTCA 947
||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||
Sbjct 840 TTCCAGCCCTAATGCCACTGACACAGTCCCCTTGGTGAGAGAATATGCCGATGGCACTCA 899
Query 948 AAAATTCTTCAATGCTTTTGTGGAAGCAATGAATAGAATGGGAAACATTACACCTCTCAC 1007
||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 900 AAAATTCTTCAATGCTTTTGTTGAAGCCATGAATAGGATGGGAAACATTACACCTCTCAC 959
Query 1008 TGGAACTCAAGGACAAATCAGACAGAATTGTAGGGTGGTTAACTCCAACTCGCTGCTACA 1067
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 960 TGGAACTCAAGGACAAATCAGACAGAATTGTAGGGTGGTCAACTCCAACTCGCTGCTACA 1019
Query 1068 TGATGTGGTCGAAATCGTTGACTTTGTCAGCTCTAT 1103
||||||||| ||||| ||||||||||||||||||||
Sbjct 1020 TGATGTGGTTGAAATTGTTGACTTTGTCAGCTCTAT 1055
> Ahg485264 jgi|Araly1|485264|fgenesh2_kg.5__1256__AT3G49120.1
Length=1311
Score = 1055 bits (571), Expect = 0.0
Identities = 924/1092 (85%), Gaps = 34/1092 (3%)
Strand=Plus/Plus
Query 34 TTTCTTCTTAT-AGAAATGAATTTCTCTTATTCTTC--C-TTG-TCAACTTGGACAACCC 88
|||| |||| | | ||||| ||||||||| ||||| | | | || ||||||||||||
Sbjct 145 TTTCCTCTT-TCAAAAATGCATTTCTCTTCGTCTTCTACATCGTTC-ACTTGGACAACCA 202
Query 89 TAATGACATTGGGTTGTCTTCTGCTTCATTCATCCATT-TCC-AGTGCTCAGCTAACCCC 146
|||| |||||||| |||||| |||||||||||| | || ||| | |||||| || |||||
Sbjct 203 TAATCACATTGGGATGTCTTTTGCTTCATTCAT-CTTTGTCCTA-TGCTCAACTTACCCC 260
Query 147 AACTTTCTATGACAATACATGTCC-AAGCGTCTTTACCATCGTACGGGATACCATAGTAA 205
|| ||||| || | | ||||||| || |||| || ||||||||| || ||||| ||||
Sbjct 261 CACCTTCTACGATAGTTCATGTCCTAA-CGTCACTAACATCGTACGAGAAACCATTGTAA 319
Query 206 ACGAGCTAAGATCGGATCCTCGTATCGCTGCAAGCATCCTTCGTCTTCACTTCCACGACT 265
| ||| |||| ||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 320 ATGAGTTAAGGTCGGACCCTCGTATCGCTGCGAGCATCCTTCGTCTTCACTTCCACGACT 379
Query 266 G-TTTCGTCAATG---GCTGTGATGCATCGATCCTGTTAGACAACACAACATCCTTTCGA 321
| ||| || |||| ||||||| ||||| ||| ||||||||||||| ||||| ||||||
Sbjct 380 GCTTT-GTTAATGTAAGCTGTGACGCATCCATCTTGTTAGACAACACGACATCATTTCGA 438
Query 322 ACAGAGAAAGATGCGGCTCCAAACGCAAACTCGGCTCGAGGATTTCCAGTGATCGATAGA 381
|||||||||||||| | ||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 439 ACAGAGAAAGATGCCTTTGGAAACGCAAATTCGGCTCGAGGATTTCCTGTGATTGATAGA 498
Query 382 ATGAAAGCAGCAGTAGAGACAGCATGTCCAAGGACTGTTTCATGCGCAGATATACTTACC 441
|||||||| || || |||| ||||| ||||| || ||||| ||||||||||| || |||
Sbjct 499 ATGAAAGCCGCGGTGGAGAGGGCATGCCCAAGAACCGTTTCGTGCGCAGATATGCTCACC 558
Query 442 ATCGCAGCTCAACAAGCTGTAAATTTGGCAGGAGGTCCTTCTTGGAGGGTTCCTTTGGGG 501
|| |||||||||||| |||| | ||||||||||||||||||||||||||||||||||||
Sbjct 559 ATTGCAGCTCAACAATCTGTCACTTTGGCAGGAGGTCCTTCTTGGAGGGTTCCTTTGGGA 618
Query 502 AGAAGAGATAGCTTACAAGCATTCTTTGC-TCTCGCTAATACAAATCTTCCC-GCTCCAT 559
|| ||||| |||||||||||||| | || |||||||||| ||||||| ||| |||||||
Sbjct 619 AGGAGAGACAGCTTACAAGCATT-TCTGAATCTCGCTAATGCAAATCT-CCCAGCTCCAT 676
Query 560 TCTTCACTCTCCCACAACTTAAGGCCAGTTTTCAAAA-TGTTGGACTTGACCGTCCCTCT 618
||||||| || ||| | ||||| ||||| || ||||| |||||| || || ||||| |||
Sbjct 677 TCTTCACACTTCCAGAGCTTAAAGCCAGCTT-CAAAAATGTTGGCCTCGATCGTCCTTCT 735
Query 619 GATCTCGTTGCACTCTCTGGTGGTCACACATTTGGTAAAAACCAGTGCCAATTTATTATG 678
||||| ||||| ||||| ||||||||||||||||||||||| || || || |||||| ||
Sbjct 736 GATCTTGTTGCTCTCTCCGGTGGTCACACATTTGGTAAAAATCAATGTCAGTTTATTCTG 795
Query 679 GATAGACTATACAACTTT-AGCAACACTGGTTTACCCGACCCTACTCTTAATACTACATA 737
|| ||| ||||||| ||| |||||||| ||||||||||||||||| || |||||||| ||
Sbjct 796 GACAGATTATACAA-TTTCAGCAACACAGGTTTACCCGACCCTACCCTCAATACTACTTA 854
Query 738 CCTCCAGACACTTCGTGGACAATGTCCCCGCAATGGTAACCAGACCGT-C-TTAGTTGAT 795
|||||| || |||||||||| ||| |||| ||||| || | || || | || || |||
Sbjct 855 CCTCCAAACTCTTCGTGGACTATGCCCCCTTAATGGCAATC-GAA-GTGCCTTGGTCGAT 912
Query 796 TTCGATCTACGCACACCGACGGTTTTTGACAATAAATACTATGTGAATCTGAAAGAGCTA 855
|| |||||||| || || || ||||| ||||| |||||||| |||||||| |||||||||
Sbjct 913 TTTGATCTACGTACGCCTACAGTTTTCGACAACAAATACTACGTGAATCTCAAAGAGCTA 972
Query 856 AAGGGACTTATCCAGA-CGGATCAAGAGTTGTTTTCCAGCCCTAATGCCACTGACACAAT 914
|| || |||||||||| || ||||||||||||| || ||||| |||||||||||||||||
Sbjct 973 AAAGGTCTTATCCAGAGCG-ATCAAGAGTTGTTCTCTAGCCCCAATGCCACTGACACAAT 1031
Query 915 CCCCTTGGTGAGAGAATACGCTGATGGCACTCAAAAATTCTTCAATGCTTTTGTGGAAGC 974
|||||||||||||| ||| ||||||||||| |||| |||||||||||| |||||||| ||
Sbjct 1032 CCCCTTGGTGAGAGCATATGCTGATGGCACACAAACATTCTTCAATGCATTTGTGGAGGC 1091
Query 975 AATGAATAGAATGGGAAACATTACACCT-CTCACTGGAACTCAAGGACAAATCAGACAGA 1033
|||||||| |||||||||||||||||| || || |||||||||||||||||||| ||
Sbjct 1092 GATGAATAGGATGGGAAACATTACACCTACT-ACAGGAACTCAAGGACAAATCAGGTTGA 1150
Query 1034 ATTGTAGGGTGGTTAACTCCAACTCGCTGCTACATGATGTGGTCGAAATCGTTGACTTTG 1093
||||||||||||| ||||||||| | ||||| || |||||||| || |||||||||||||
Sbjct 1151 ATTGTAGGGTGGTGAACTCCAACACACTGCTCCAAGATGTGGTGGAGATCGTTGACTTTG 1210
Query 1094 TCAGCTCTATGT 1105
| ||||||||||
Sbjct 1211 TTAGCTCTATGT 1222
> Ahg485262 jgi|Araly1|485262|fgenesh2_kg.5__1254__AT3G49110.1
Length=1242
Score = 966 bits (523), Expect = 0.0
Identities = 873/1042 (84%), Gaps = 24/1042 (2%)
Strand=Plus/Plus
Query 76 ACTTGGACAACCCTAATGACATTGGGTTGTCTTCTGCTTCATTCATC-CATTTCCAG-TG 133
|||||||||| | |||| |||||||| |||||| |||||| | | || | | ||| | ||
Sbjct 68 ACTTGGACAATCTTAATCACATTGGGATGTCTTATGCTTCGTGCGTCTC-TGTCC-GATG 125
Query 134 CTCAGCTAACCCCAACTTTCTATGACAATACATGTCC-AAGCGTCTTTACCATCGTACGG 192
|||| || ||||| || ||||| |||| | ||||||| || |||| | ||| ||| |
Sbjct 126 CTCAACTTACCCCTACCTTCTACGACACTTCATGTCCTAA-CGTCACCAACATTGTAAGA 184
Query 193 GATACCATAGTAAACGAGCTAAGATCGGATCCTCGTATCGCTGCAAGCATCCTTCGTCTT 252
|||||||| || ||||||||||||||||| ||||||||||| | |||||||||||||||
Sbjct 185 GATACCATTGTGAACGAGCTAAGATCGGACCCTCGTATCGCCGGGAGCATCCTTCGTCTT 244
Query 253 CACTTCCACGACTG-TTTCGTCAATGGCTGTGATGCATCGATCCTGTTAGACAACACAAC 311
|||||||||||||| ||| || ||||| ||||| ||||| ||| ||||||||||||| ||
Sbjct 245 CACTTCCACGACTGCTTT-GTTAATGGTTGTGACGCATCCATCTTGTTAGACAACACGAC 303
Query 312 ATCCTTTC-GAACAGAGAAAGATGCGGCTCC-AAACGCAAACTCGGCTCGAGGATTTCCA 369
||| |||| || |||||||||||||| || ||||||||| |||||||||||||||||
Sbjct 304 ATCATTTCAGA-CAGAGAAAGATGCG-CTTGGAAACGCAAATTCGGCTCGAGGATTTCCT 361
Query 370 GTGATCGATAGAATGAAAGCAGCAGTAGAGACAGCATGTCCAAGGACTGTTTCATGCGCA 429
||||| |||||||||||||| || ||||||| ||||| ||||| || ||||| ||||||
Sbjct 362 GTGATTGATAGAATGAAAGCCGCGGTAGAGAGGGCATGCCCAAGAACCGTTTCGTGCGCA 421
Query 430 GATATACTTACCATCGCAGCTCAACAAGCTGTAAATTTGGCAGGAGGTCCTTCTTGGAGG 489
||||| || ||||| |||||||||||| |||| | ||||||||||||||||||||||| |
Sbjct 422 GATATGCTCACCATTGCAGCTCAACAATCTGTCACTTTGGCAGGAGGTCCTTCTTGGAAG 481
Query 490 GTTCCTTTGGGGAGAAGAGATAGCTTACAAGCATT-CTTTGCTCTCGCTAATACAAATCT 548
|||||||||||||||||||| |||||||||||||| || |||||||||| |||||||
Sbjct 482 GTTCCTTTGGGGAGAAGAGACAGCTTACAAGCATTTCTAAA-TCTCGCTAATGCAAATCT 540
Query 549 TCCC-GCTCCATTCTTCACTCTCCCACAACTTAAGGCCAGTTTTCAAAAT-GTTGGACTT 606
||| |||||||||||||| || ||| | ||||| |||| || ||||| ||||| ||
Sbjct 541 -CCCAGCTCCATTCTTCACACTTCCAGAGCTTAAAGCCAACTT-CAAAAAAGTTGGCCTC 598
Query 607 GACCGTCCCTCTGATCTCGTTGCACTCTCTGGTGG-TCACACATTTGGTAAAAACCAGTG 665
|| ||||| |||||||| ||||| ||||| || || |||||||||||||||||| || ||
Sbjct 599 GATCGTCCTTCTGATCTTGTTGCTCTCTCCGG-GGCTCACACATTTGGTAAAAATCAATG 657
Query 666 CCAATTTATTATGGATAGACTATACAACTTTAGCAACACTGGTTTACCCGACCCTACTCT 725
| |||||||||||| || ||||||||||||||||||| || ||||| |||||||| ||
Sbjct 658 TCGATTTATTATGGACCGATTATACAACTTTAGCAACACCGGATTACCTGACCCTACACT 717
Query 726 TAATACTACATACCTCCAGACACTTCGTGGACAATGTCCCCGCAATGGTAACCAGACCGT 785
|| || || ||||| || || ||||||||||||||||| ||||||||||| || | ||
Sbjct 718 CAACACGACTTACCTACAAACTCTTCGTGGACAATGTCCTCGCAATGGTAATCAAAGTGT 777
Query 786 CTTAGTTGATTTCGATCTACGCACACCGACGGTTTTTGACAATAAATACTATGTGAATCT 845
||||| ||||||||||| || || || ||||| ||||| |||||||||||||||||
Sbjct 778 TTTAGTGGATTTCGATCTGCGTACGCCTTTAGTTTTCGACAACAAATACTATGTGAATCT 837
Query 846 GAAAGAGCTAAAGGGACTTATCCAGA-CGGATCAAGAGTTGTTTTCCAGCCCTAATGCCA 904
||||||| ||| || |||||||| | || ||||||||||||| || ||||| |||||||
Sbjct 838 CAAAGAGCAAAAAGGTCTTATCCAAAGCG-ATCAAGAGTTGTTCTCTAGCCCCAATGCCA 896
Query 905 CTGACACAATCCCCTTGGTGAGAGAATACGCTGATGGCACTCAAAAATTCTTCAATGCTT 964
| ||||| ||||||||||||||| || ||||||||||| |||||||||| |||| |
Sbjct 897 CAGACACGATCCCCTTGGTGAGATCATTTGCTGATGGCACAGAAAAATTCTTTGATGCGT 956
Query 965 TTGTGGAAGCAATGAATAGAATGGGAAACATTACACCT-CTCACTGGAACTCAAGGACAA 1023
||||||| ||||||||||| |||||||||||||||||| || || ||| |||||||||||
Sbjct 957 TTGTGGAGGCAATGAATAGGATGGGAAACATTACACCTACT-ACAGGATCTCAAGGACAA 1015
Query 1024 ATCAGACAGAATTGTAGGGTGGTTAACTCCAACTCGCTGCTACATGATGTGGTCGAAATC 1083
||||| ||||||||| ||||| ||||||||||| || || ||||||||||| || ||
Sbjct 1016 ATCAGGTTGAATTGTAGAGTGGTGAACTCCAACTCTCTACTCCATGATGTGGTGGAGATA 1075
Query 1084 GTTGACTTTGTCAGCTCTATGT 1105
||||||||||| ||||||||||
Sbjct 1076 GTTGACTTTGTAAGCTCTATGT 1097
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52869260060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5