BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G33025.1 Length=1086 Score E Sequences producing significant alignments: (Bits) Value Ahg930960 jgi|Araly1|930960|scaffold_303417.1 771 0.0 Ahg930961 jgi|Araly1|930961|scaffold_303418.1 647 0.0 Ahg930957 jgi|Araly1|930957|scaffold_303414.1 438 3e-122 > Ahg930960 jgi|Araly1|930960|scaffold_303417.1 Length=1138 Score = 771 bits (417), Expect = 0.0 Identities = 741/890 (83%), Gaps = 51/890 (6%) Strand=Plus/Plus Query 198 CAAACTCAGATAAATGGTGTCTAATGTTATATTCTGGATGCAATTTAG-CTATTATAGAT 256 ||||||| | |||||||| ||| ||| || |||||||||||||||| | |||||| ||| Sbjct 286 CAAACTCTGGTAAATGGTTTCTGATGGTAGATTCTGGATGCAATTT-GTATATTATGGAT 344 Query 257 GTGTTTAGCCAGGATAGGAGGATCAATTTTCTGCCTCTAGAGTCGCTCCAATC-AGATAC 315 ||||||||| | || | |||||| || ||| ||||||||||||||||| | | | | | Sbjct 345 GTGTTTAGCGA-GA-A-CAGGATCGATCTTCCGCCTCTAGAGTCGCTCCTA-CAACTTGC 400 Query 316 ATATACTCTCAAG-CGTGTG-GTAGATAAGGAA--TACT-GTTTTGAATTACCTAGTGGC 370 ||| |||||||| | |||| | ||||||| || || | ||||| |||| |||||||| Sbjct 401 CTATGCTCTCAAGTC-TGTGAG-AGATAAGCAATGTAATAATTTTGGATTAGCTAGTGGC 458 Query 371 -GATTAT-TGCAACGAGA-ACG-CCGATGATCTGAGAGGCCGTTTGTGGGTAGACAAGAA 426 | |||| | || |||| | | ||| | ||||||| |||||||||||||||||| |||| Sbjct 459 TG-TTATCAG-AAAGAGATA-GCCCG-TAATCTGAGGGGCCGTTTGTGGGTAGACGAGAA 514 Query 427 GACGGGAGAGTTCGTTGTAGTGTGGTTCTTTAACCCTTATACCTATTTATTCTATTGCAA 486 ||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| Sbjct 515 GACGGGAGAGTTCGTTGTAGTGTGGTTCTTTGACCCTGATATTTATTTATTCTATTGCAA 574 Query 487 GAAGGGGGATACTCATAACACTGTCATTCCCTTGTCTGACCAGGTCCCCAAGGTT-GTAA 545 ||||||||||| |||| ||||| ||||| | |||| | || | |||||||| ||| ||| Sbjct 575 GAAGGGGGATAATCATTACACTATCATTTCGTTGTATCACGAAGTCCCCAA-GTTATTAA 633 Query 546 ATGGCTTAACTGATCTAGTACTCTGGGGTTACCGTCTTTACATCGCAACCAAACGTCGTT 605 | ||||||| ||||||||||||| |||||||||||||||| || ||| | |||||| ||| Sbjct 634 AAGGCTTAAATGATCTAGTACTCAGGGGTTACCGTCTTTATATAGCATCTAAACGTGGTT 693 Query 606 TCGCTCGAGTTATTGATTTGTCTGGATATCAAAGGTTTCGAGGATGTCACCGGGAGTAAC 665 ||| ||||||||| |||||||||||| | | ||| ||||||||||||||||||||||||| Sbjct 694 TCGTTCGAGTTATAGATTTGTCTGGACAAC-AAGATTTCGAGGATGTCACCGGGAGTAAC 752 Query 666 CCAAAGCAAATGTTTTCCCCTCTCGGAGAACATAATTCTTTTAGCATTGCGGATATAATA 725 ||||||||||||||||| |||||||| |||||||||||||||||| |||| | || || | Sbjct 753 CCAAAGCAAATGTTTTCTCCTCTCGGGGAACATAATTCTTTTAGCGTTGCCGTTACAACA 812 Query 726 TCAGGAGAGGTTTTGTTGGTTGAGGGCATAACCTTTGAAAACTAGAGGATCTTTTGTCTC 785 ||||||||||||||||||| ||| ||| |||||| ||| || |||||| ||| | ||| Sbjct 813 ACAGGAGAGGTTTTGTTGGTCGAGAGCAAAACCTTCGAAGACCAGAGGACCTTCCGCCTC 872 Query 786 TTCAA-A-GGATCCTAACAACTTAGACGACCCACATGTCTACCACCAcccccccccAAGC 843 || || | |||||||||||| | | ||||||| |||| | || | |||| |||| Sbjct 873 TTTAAGAAGGATCCTAACAA-TGC-A-GACCCACTTGTC--C-AC-AGCCCC----AAGC 921 Query 844 TTCTTGAGGTAGATTCTCTTGGTGATGAAGCCCTTCTTCTTGACTTGGGTATTACCATGC 903 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | Sbjct 922 TTCTTGAGGTAGATTCTCTTGGTGATGAAGCCCTGCTTCTTGACTTGGGTATTACGGTAC 981 Query 904 CTGCTAACCATACCCTAGGTATCAAGCCAAACTCTATCTATTTTACTCGTCATGACCGTG 963 | |||||||||||| | |||||||| ||||||||||||||||| || ||||||||||||| Sbjct 982 CGGCTAACCATACCATTGGTATCAAACCAAACTCTATCTATTTCACCCGTCATGACCGTG 1041 Query 964 CCCGTTTTAAAATCCCTTTTGATCTGGACATATATGTGTTCAATCTTGCAACCAAGACCC 1023 || || | |||||||||||||| ||||| | |||||||||||||||||||||||||| Sbjct 1042 CCTGTCTCCGCATCCCTTTTGATCTTGACATCTGTGTGTTCAATCTTGCAACCAAGACCC 1101 Query 1024 TCAAACGCTTCCCTCAACTCGCCAACATGAATCTCAAGGATGCTCAATGG 1073 |||| | | | |||||||||||||||||||||||||||||| Sbjct 1102 TCAA-C--T-C---------GCCAACATGAATCTCAAGGATGCTCAATGG 1138 > Ahg930961 jgi|Araly1|930961|scaffold_303418.1 Length=1191 Score = 647 bits (350), Expect = 0.0 Identities = 744/928 (80%), Gaps = 51/928 (5%) Strand=Plus/Plus Query 178 CTCAGGGATTTGGTTCCTGACAAACTCAGATAAATGGTGTCTAATGTTATATTCTGGATG 237 |||||||||| | || ||| ||||||| | |||||||| ||| |||||| |||||||||| Sbjct 271 CTCAGGGATTCGATTTCTGGCAAACTCGGGTAAATGGTTTCTGATGTTAGATTCTGGATG 330 Query 238 CAA-TT-TAGCTATTATAGATGTGTTTAGCCAGGATAGGAGGATCAATTTTCTGCCTCTA 295 ||| || || |||||| |||||||||||| | || | |||||| || ||| |||||| Sbjct 331 CAACTTGTA--TATTATGGATGTGTTTAGCGA-GA-A-AAGGATCGATCTTCCACCTCTA 385 Query 296 GAGTCGCTCCAATC-AGATACATATACTCTCAAGCGTGT-GGTAGATAAGGAATACT-GT 352 ||||| || ||| || ||| ||| ||||||||| | | || | |||||||||| | | Sbjct 386 GAGTCCCTTGTATCAAG-TACCTATGCTCTCAAGCCT-TCGGGATATAAGGAATA-TAG- 441 Query 353 TTTGA-ATTACCTAGTGGCGATTATTGCA-ACGAGAACGCCGA-TGATCTGAGAGGCCGT 409 ||||| ||||||| ||||| || ||||| | |||| || | | |||||||| ||||| Sbjct 442 TTTGATATTACCTGGTGGCTCTTGTTGCATA-TTGAACACC-AGTTATCTGAGAAGCCGT 499 Query 410 TTGTGGGTAGACAAGAAGACGGGAGAGTTCGTTGTAGTGTGGTTCTTTAACCCTTATACC 469 ||||||||||| ||||||| ||||||||||| |||||| ||||||| | |||| | || Sbjct 500 TTGTGGGTAGATGAGAAGACAGGAGAGTTCGTCCTAGTGTTGTTCTTTGATCCTTCT-CC 558 Query 470 -TATTTATTCTATTGCAAGAAGGGGGATACTCATAACACTGTCATTCC-CTTGTCTGAC- 526 |||||||||||||||||||| ||||| | |||| ||||||| ||||| | | |||| Sbjct 559 TTATTTATTCTATTGCAAGAATGGGGACAATCATTACACTGTTATTCCGGTAG-ATGACA 617 Query 527 CAGGTCCCCA-AGGTTGTAAATGGCTTAACTGATCTAGTACTCTGGGGTTACCGTCTTTA 585 | |||| | | |||| || ||| |||||||||||||||||||||||||||||||||| Sbjct 618 AATTTCCCAATATGTTG-CAA-GGCGTAACTGATCTAGTACTCTGGGGTTACCGTCTTTA 675 Query 586 CATCGCAACCAAACGTCGTTTCGCTCGAGTTATTGATTTGTCTGGATATCAAAGGTTTCG 645 ||| ||| | || ||||||| || ||||||||| |||||||||||| || || ||||||| Sbjct 676 CATTGCATCTAACCGTCGTTGCGTTCGAGTTATAGATTTGTCTGGACATGAA-GGTTTCG 734 Query 646 AGGATGTCACCGGGAGTAACCCAAAGCAAATGTTTTCCCCTCTCGGAGAACATAATTCTT 705 ||||||||||||||||||||||||||| |||||| || ||||||||||||||| |||||| Sbjct 735 AGGATGTCACCGGGAGTAACCCAAAGCCAATGTTATCTCCTCTCGGAGAACATGATTCTT 794 Query 706 TTAGCATTGCGGATATAATATCAGGAGAGGTTTTGTTGGTTGAGGGCATAACCTTTGAAA 765 ||| ||||| || || | | ||||||||||||||||||| ||| ||| |||| |||||| Sbjct 795 TTAACATTGTGGTTACGACAGCAGGAGAGGTTTTGTTGGTGGAGAGCACAACCGTTGAAA 854 Query 766 ACTAGAGGATCTTTTGTC-TCTTCAA-AGGA-TCCTAACAACTTAGACGACCCACATGTC 822 || |||| | ||| | | ||| ||| | || |||||| || || || | | | Sbjct 855 ACCAGAGAACCTTCCG-CATCTACAAGAAGAATCCTAATG-CT--GAT--CC-AGAGG-- 905 Query 823 TACCACCAcccccccccAAGCTTCTTGAGGTAGATTCTCTTGGTGATGAAGCCCTTCTTC 882 |||| | |||| | ||| ||||||||||||||||||||||||| ||||| |||| Sbjct 906 -ACCAA-ATGCCCC---AT-CTTGTTGAGGTAGATTCTCTTGGTGATGAGGCCCTGCTTC 959 Query 883 TTGACTTGGGTATTACCATGCCTGCTAACCATACCCTAGGTATC-AAGCCAAACTCTATC 941 | |||||||||| ||| ||||| |||||||| |||| |||||| || |||||| ||||| Sbjct 960 TCGACTTGGGTACTACTGTGCCTTCTAACCATGCCCTTGGTATCCAA-CCAAACACTATC 1018 Query 942 TATTTTACTCGTCATGACCGTGCCCGTTTTAAAATCCCTTTTGATCTGGACATATATGTG 1001 ||||| || |||||| |||||| |||||| || ||||||||||||| || | |||| Sbjct 1019 TATTTCACACGTCATAACCGTGTCCGTTTCCGCATGTCTTTTGATCTGGAAATCTGTGTG 1078 Query 1002 TTCAATCTTGCAACCAAGACCCTCA--AA-CGCTTCCCTCAACTCGCCAACATGAATCTC 1058 ||||||||||||||||| ||||||| || | ||||||||| || |||||| |||| | | Sbjct 1079 TTCAATCTTGCAACCAACACCCTCATCAAACACTTCCCTCATCTTGCCAACTTGAAACCC 1138 Query 1059 AAGGATGCTCAATGGTTTCACCCCATGA 1086 | |||||||| |||||||| ||| |||| Sbjct 1139 AGGGATGCTCTATGGTTTCTCCCTATGA 1166 > Ahg930957 jgi|Araly1|930957|scaffold_303414.1 Length=594 Score = 438 bits (237), Expect = 3e-122 Identities = 452/551 (82%), Gaps = 34/551 (6%) Strand=Plus/Plus Query 552 TAACTGATCTAGTACTCTGGGGTTACCGTCTTTACATCGCAACCAAAC-GTCGTTTCGC- 609 |||||||||||| |||| ||||||||||||||||||| || | | ||| |||||| | | Sbjct 40 TAACTGATCTAGCACTCCGGGGTTACCGTCTTTACATGGC-ATCTAACAGTCGTTGC-CT 97 Query 610 TCGAGTTATTGATTTGTCTGGATATCAAAGGTTTCGAGGATGTCACCGGGAGTAACCCAA 669 ||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 98 TCGAGTTATAGATTTGTCTGGAAATC-AAGGTTTCGAGGATGTCACCGGGAGTAACCCAA 156 Query 670 AGCAAATGTTTTCCCCTCTCGGAGAACATAATTCTTTTAGCATTGCGGATATAATATCAG 729 ||| |||||| || ||||||||| ||||||||| |||||||||| | | || || | ||| Sbjct 157 AGCCAATGTTATCTCCTCTCGGAAAACATAATTATTTTAGCATTACCGTTACAACAGCAG 216 Query 730 GAGAGGTTTTGTTGGTTGAGGGCATAACCTTTGAAAACTAGAGGATCTTTTGTCTCTTCA 789 |||||||||||||||| ||| ||| ||||||||||||| |||||| ||| || ||| || Sbjct 217 GAGAGGTTTTGTTGGTCGAGAGCACAACCTTTGAAAACCAGAGGACCTTCCGTGTCTACA 276 Query 790 --AAGGATCCTAACAACTTAGACGACCCACATGTCTACCACCAcccccccccAAGCTTCT 847 ||||||||||| || ||| || | ||| |||| | ||| || ||| | Sbjct 277 GGAAGGATCCTAATG-CT--GAC--CC-AGATG---ACCAA-ATCCC-----AATCTTTT 321 Query 848 TGAGGTAGATTCTCTTGGTGATGAAGCCCTTCTTCTTGACTTGGGTATTACCATGCCTGC 907 |||| | ||||||||||||||||| ||||| ||||| ||||||||||| || ||| ||| Sbjct 322 TGAGTTGGATTCTCTTGGTGATGAGGCCCTGCTTCTCGACTTGGGTATCACTGTGCATGC 381 Query 908 TAACCATACCCTAGGTATCAAGCCAAACTCTATCTATTTTACTCGTCATGACCGT----G 963 | |||||||||| |||||||| ||||||||||||||||| || |||||||||||| | Sbjct 382 TTACCATACCCTTGGTATCAAACCAAACTCTATCTATTTCACCCGTCATGACCGTTAACG 441 Query 964 --CCCGT-T---T-TAAA-ATCCCTTTTGATCTGGACATATATGTGTTCAATCTTGCAAC 1015 ||||| | | | ||||||||||||||||| || | |||||||| ||||||||| Sbjct 442 TTCCCGTCTCCGTCTCCGCATCCCTTTTGATCTGGATATTTGTGTGTTCAGTCTTGCAAC 501 Query 1016 CAAGACCCTCAAACGCTTCCCTCAACTCGCCAACATGAATCTCAAGGATGCTCAATGGTT 1075 ||| ||||||| ||||||||||||||||||||| || ||| ||||||||||| |||||| Sbjct 502 CAAAACCCTCATTCGCTTCCCTCAACTCGCCAACTTGTATCCCAAGGATGCTCGATGGTT 561 Query 1076 TCACCCCATGA 1086 || ||| |||| Sbjct 562 TCTCCCTATGA 572 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40448414937 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5