BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G33025.1
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930960 jgi|Araly1|930960|scaffold_303417.1 771 0.0
Ahg930961 jgi|Araly1|930961|scaffold_303418.1 647 0.0
Ahg930957 jgi|Araly1|930957|scaffold_303414.1 438 3e-122
> Ahg930960 jgi|Araly1|930960|scaffold_303417.1
Length=1138
Score = 771 bits (417), Expect = 0.0
Identities = 741/890 (83%), Gaps = 51/890 (6%)
Strand=Plus/Plus
Query 198 CAAACTCAGATAAATGGTGTCTAATGTTATATTCTGGATGCAATTTAG-CTATTATAGAT 256
||||||| | |||||||| ||| ||| || |||||||||||||||| | |||||| |||
Sbjct 286 CAAACTCTGGTAAATGGTTTCTGATGGTAGATTCTGGATGCAATTT-GTATATTATGGAT 344
Query 257 GTGTTTAGCCAGGATAGGAGGATCAATTTTCTGCCTCTAGAGTCGCTCCAATC-AGATAC 315
||||||||| | || | |||||| || ||| ||||||||||||||||| | | | | |
Sbjct 345 GTGTTTAGCGA-GA-A-CAGGATCGATCTTCCGCCTCTAGAGTCGCTCCTA-CAACTTGC 400
Query 316 ATATACTCTCAAG-CGTGTG-GTAGATAAGGAA--TACT-GTTTTGAATTACCTAGTGGC 370
||| |||||||| | |||| | ||||||| || || | ||||| |||| ||||||||
Sbjct 401 CTATGCTCTCAAGTC-TGTGAG-AGATAAGCAATGTAATAATTTTGGATTAGCTAGTGGC 458
Query 371 -GATTAT-TGCAACGAGA-ACG-CCGATGATCTGAGAGGCCGTTTGTGGGTAGACAAGAA 426
| |||| | || |||| | | ||| | ||||||| |||||||||||||||||| ||||
Sbjct 459 TG-TTATCAG-AAAGAGATA-GCCCG-TAATCTGAGGGGCCGTTTGTGGGTAGACGAGAA 514
Query 427 GACGGGAGAGTTCGTTGTAGTGTGGTTCTTTAACCCTTATACCTATTTATTCTATTGCAA 486
||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||
Sbjct 515 GACGGGAGAGTTCGTTGTAGTGTGGTTCTTTGACCCTGATATTTATTTATTCTATTGCAA 574
Query 487 GAAGGGGGATACTCATAACACTGTCATTCCCTTGTCTGACCAGGTCCCCAAGGTT-GTAA 545
||||||||||| |||| ||||| ||||| | |||| | || | |||||||| ||| |||
Sbjct 575 GAAGGGGGATAATCATTACACTATCATTTCGTTGTATCACGAAGTCCCCAA-GTTATTAA 633
Query 546 ATGGCTTAACTGATCTAGTACTCTGGGGTTACCGTCTTTACATCGCAACCAAACGTCGTT 605
| ||||||| ||||||||||||| |||||||||||||||| || ||| | |||||| |||
Sbjct 634 AAGGCTTAAATGATCTAGTACTCAGGGGTTACCGTCTTTATATAGCATCTAAACGTGGTT 693
Query 606 TCGCTCGAGTTATTGATTTGTCTGGATATCAAAGGTTTCGAGGATGTCACCGGGAGTAAC 665
||| ||||||||| |||||||||||| | | ||| |||||||||||||||||||||||||
Sbjct 694 TCGTTCGAGTTATAGATTTGTCTGGACAAC-AAGATTTCGAGGATGTCACCGGGAGTAAC 752
Query 666 CCAAAGCAAATGTTTTCCCCTCTCGGAGAACATAATTCTTTTAGCATTGCGGATATAATA 725
||||||||||||||||| |||||||| |||||||||||||||||| |||| | || || |
Sbjct 753 CCAAAGCAAATGTTTTCTCCTCTCGGGGAACATAATTCTTTTAGCGTTGCCGTTACAACA 812
Query 726 TCAGGAGAGGTTTTGTTGGTTGAGGGCATAACCTTTGAAAACTAGAGGATCTTTTGTCTC 785
||||||||||||||||||| ||| ||| |||||| ||| || |||||| ||| | |||
Sbjct 813 ACAGGAGAGGTTTTGTTGGTCGAGAGCAAAACCTTCGAAGACCAGAGGACCTTCCGCCTC 872
Query 786 TTCAA-A-GGATCCTAACAACTTAGACGACCCACATGTCTACCACCAcccccccccAAGC 843
|| || | |||||||||||| | | ||||||| |||| | || | |||| ||||
Sbjct 873 TTTAAGAAGGATCCTAACAA-TGC-A-GACCCACTTGTC--C-AC-AGCCCC----AAGC 921
Query 844 TTCTTGAGGTAGATTCTCTTGGTGATGAAGCCCTTCTTCTTGACTTGGGTATTACCATGC 903
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 922 TTCTTGAGGTAGATTCTCTTGGTGATGAAGCCCTGCTTCTTGACTTGGGTATTACGGTAC 981
Query 904 CTGCTAACCATACCCTAGGTATCAAGCCAAACTCTATCTATTTTACTCGTCATGACCGTG 963
| |||||||||||| | |||||||| ||||||||||||||||| || |||||||||||||
Sbjct 982 CGGCTAACCATACCATTGGTATCAAACCAAACTCTATCTATTTCACCCGTCATGACCGTG 1041
Query 964 CCCGTTTTAAAATCCCTTTTGATCTGGACATATATGTGTTCAATCTTGCAACCAAGACCC 1023
|| || | |||||||||||||| ||||| | ||||||||||||||||||||||||||
Sbjct 1042 CCTGTCTCCGCATCCCTTTTGATCTTGACATCTGTGTGTTCAATCTTGCAACCAAGACCC 1101
Query 1024 TCAAACGCTTCCCTCAACTCGCCAACATGAATCTCAAGGATGCTCAATGG 1073
|||| | | | ||||||||||||||||||||||||||||||
Sbjct 1102 TCAA-C--T-C---------GCCAACATGAATCTCAAGGATGCTCAATGG 1138
> Ahg930961 jgi|Araly1|930961|scaffold_303418.1
Length=1191
Score = 647 bits (350), Expect = 0.0
Identities = 744/928 (80%), Gaps = 51/928 (5%)
Strand=Plus/Plus
Query 178 CTCAGGGATTTGGTTCCTGACAAACTCAGATAAATGGTGTCTAATGTTATATTCTGGATG 237
|||||||||| | || ||| ||||||| | |||||||| ||| |||||| ||||||||||
Sbjct 271 CTCAGGGATTCGATTTCTGGCAAACTCGGGTAAATGGTTTCTGATGTTAGATTCTGGATG 330
Query 238 CAA-TT-TAGCTATTATAGATGTGTTTAGCCAGGATAGGAGGATCAATTTTCTGCCTCTA 295
||| || || |||||| |||||||||||| | || | |||||| || ||| ||||||
Sbjct 331 CAACTTGTA--TATTATGGATGTGTTTAGCGA-GA-A-AAGGATCGATCTTCCACCTCTA 385
Query 296 GAGTCGCTCCAATC-AGATACATATACTCTCAAGCGTGT-GGTAGATAAGGAATACT-GT 352
||||| || ||| || ||| ||| ||||||||| | | || | |||||||||| | |
Sbjct 386 GAGTCCCTTGTATCAAG-TACCTATGCTCTCAAGCCT-TCGGGATATAAGGAATA-TAG- 441
Query 353 TTTGA-ATTACCTAGTGGCGATTATTGCA-ACGAGAACGCCGA-TGATCTGAGAGGCCGT 409
||||| ||||||| ||||| || ||||| | |||| || | | |||||||| |||||
Sbjct 442 TTTGATATTACCTGGTGGCTCTTGTTGCATA-TTGAACACC-AGTTATCTGAGAAGCCGT 499
Query 410 TTGTGGGTAGACAAGAAGACGGGAGAGTTCGTTGTAGTGTGGTTCTTTAACCCTTATACC 469
||||||||||| ||||||| ||||||||||| |||||| ||||||| | |||| | ||
Sbjct 500 TTGTGGGTAGATGAGAAGACAGGAGAGTTCGTCCTAGTGTTGTTCTTTGATCCTTCT-CC 558
Query 470 -TATTTATTCTATTGCAAGAAGGGGGATACTCATAACACTGTCATTCC-CTTGTCTGAC- 526
|||||||||||||||||||| ||||| | |||| ||||||| ||||| | | ||||
Sbjct 559 TTATTTATTCTATTGCAAGAATGGGGACAATCATTACACTGTTATTCCGGTAG-ATGACA 617
Query 527 CAGGTCCCCA-AGGTTGTAAATGGCTTAACTGATCTAGTACTCTGGGGTTACCGTCTTTA 585
| |||| | | |||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct 618 AATTTCCCAATATGTTG-CAA-GGCGTAACTGATCTAGTACTCTGGGGTTACCGTCTTTA 675
Query 586 CATCGCAACCAAACGTCGTTTCGCTCGAGTTATTGATTTGTCTGGATATCAAAGGTTTCG 645
||| ||| | || ||||||| || ||||||||| |||||||||||| || || |||||||
Sbjct 676 CATTGCATCTAACCGTCGTTGCGTTCGAGTTATAGATTTGTCTGGACATGAA-GGTTTCG 734
Query 646 AGGATGTCACCGGGAGTAACCCAAAGCAAATGTTTTCCCCTCTCGGAGAACATAATTCTT 705
||||||||||||||||||||||||||| |||||| || ||||||||||||||| ||||||
Sbjct 735 AGGATGTCACCGGGAGTAACCCAAAGCCAATGTTATCTCCTCTCGGAGAACATGATTCTT 794
Query 706 TTAGCATTGCGGATATAATATCAGGAGAGGTTTTGTTGGTTGAGGGCATAACCTTTGAAA 765
||| ||||| || || | | ||||||||||||||||||| ||| ||| |||| ||||||
Sbjct 795 TTAACATTGTGGTTACGACAGCAGGAGAGGTTTTGTTGGTGGAGAGCACAACCGTTGAAA 854
Query 766 ACTAGAGGATCTTTTGTC-TCTTCAA-AGGA-TCCTAACAACTTAGACGACCCACATGTC 822
|| |||| | ||| | | ||| ||| | || |||||| || || || | | |
Sbjct 855 ACCAGAGAACCTTCCG-CATCTACAAGAAGAATCCTAATG-CT--GAT--CC-AGAGG-- 905
Query 823 TACCACCAcccccccccAAGCTTCTTGAGGTAGATTCTCTTGGTGATGAAGCCCTTCTTC 882
|||| | |||| | ||| ||||||||||||||||||||||||| ||||| ||||
Sbjct 906 -ACCAA-ATGCCCC---AT-CTTGTTGAGGTAGATTCTCTTGGTGATGAGGCCCTGCTTC 959
Query 883 TTGACTTGGGTATTACCATGCCTGCTAACCATACCCTAGGTATC-AAGCCAAACTCTATC 941
| |||||||||| ||| ||||| |||||||| |||| |||||| || |||||| |||||
Sbjct 960 TCGACTTGGGTACTACTGTGCCTTCTAACCATGCCCTTGGTATCCAA-CCAAACACTATC 1018
Query 942 TATTTTACTCGTCATGACCGTGCCCGTTTTAAAATCCCTTTTGATCTGGACATATATGTG 1001
||||| || |||||| |||||| |||||| || ||||||||||||| || | ||||
Sbjct 1019 TATTTCACACGTCATAACCGTGTCCGTTTCCGCATGTCTTTTGATCTGGAAATCTGTGTG 1078
Query 1002 TTCAATCTTGCAACCAAGACCCTCA--AA-CGCTTCCCTCAACTCGCCAACATGAATCTC 1058
||||||||||||||||| ||||||| || | ||||||||| || |||||| |||| | |
Sbjct 1079 TTCAATCTTGCAACCAACACCCTCATCAAACACTTCCCTCATCTTGCCAACTTGAAACCC 1138
Query 1059 AAGGATGCTCAATGGTTTCACCCCATGA 1086
| |||||||| |||||||| ||| ||||
Sbjct 1139 AGGGATGCTCTATGGTTTCTCCCTATGA 1166
> Ahg930957 jgi|Araly1|930957|scaffold_303414.1
Length=594
Score = 438 bits (237), Expect = 3e-122
Identities = 452/551 (82%), Gaps = 34/551 (6%)
Strand=Plus/Plus
Query 552 TAACTGATCTAGTACTCTGGGGTTACCGTCTTTACATCGCAACCAAAC-GTCGTTTCGC- 609
|||||||||||| |||| ||||||||||||||||||| || | | ||| |||||| | |
Sbjct 40 TAACTGATCTAGCACTCCGGGGTTACCGTCTTTACATGGC-ATCTAACAGTCGTTGC-CT 97
Query 610 TCGAGTTATTGATTTGTCTGGATATCAAAGGTTTCGAGGATGTCACCGGGAGTAACCCAA 669
||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 98 TCGAGTTATAGATTTGTCTGGAAATC-AAGGTTTCGAGGATGTCACCGGGAGTAACCCAA 156
Query 670 AGCAAATGTTTTCCCCTCTCGGAGAACATAATTCTTTTAGCATTGCGGATATAATATCAG 729
||| |||||| || ||||||||| ||||||||| |||||||||| | | || || | |||
Sbjct 157 AGCCAATGTTATCTCCTCTCGGAAAACATAATTATTTTAGCATTACCGTTACAACAGCAG 216
Query 730 GAGAGGTTTTGTTGGTTGAGGGCATAACCTTTGAAAACTAGAGGATCTTTTGTCTCTTCA 789
|||||||||||||||| ||| ||| ||||||||||||| |||||| ||| || ||| ||
Sbjct 217 GAGAGGTTTTGTTGGTCGAGAGCACAACCTTTGAAAACCAGAGGACCTTCCGTGTCTACA 276
Query 790 --AAGGATCCTAACAACTTAGACGACCCACATGTCTACCACCAcccccccccAAGCTTCT 847
||||||||||| || ||| || | ||| |||| | ||| || ||| |
Sbjct 277 GGAAGGATCCTAATG-CT--GAC--CC-AGATG---ACCAA-ATCCC-----AATCTTTT 321
Query 848 TGAGGTAGATTCTCTTGGTGATGAAGCCCTTCTTCTTGACTTGGGTATTACCATGCCTGC 907
|||| | ||||||||||||||||| ||||| ||||| ||||||||||| || ||| |||
Sbjct 322 TGAGTTGGATTCTCTTGGTGATGAGGCCCTGCTTCTCGACTTGGGTATCACTGTGCATGC 381
Query 908 TAACCATACCCTAGGTATCAAGCCAAACTCTATCTATTTTACTCGTCATGACCGT----G 963
| |||||||||| |||||||| ||||||||||||||||| || |||||||||||| |
Sbjct 382 TTACCATACCCTTGGTATCAAACCAAACTCTATCTATTTCACCCGTCATGACCGTTAACG 441
Query 964 --CCCGT-T---T-TAAA-ATCCCTTTTGATCTGGACATATATGTGTTCAATCTTGCAAC 1015
||||| | | | ||||||||||||||||| || | |||||||| |||||||||
Sbjct 442 TTCCCGTCTCCGTCTCCGCATCCCTTTTGATCTGGATATTTGTGTGTTCAGTCTTGCAAC 501
Query 1016 CAAGACCCTCAAACGCTTCCCTCAACTCGCCAACATGAATCTCAAGGATGCTCAATGGTT 1075
||| ||||||| ||||||||||||||||||||| || ||| ||||||||||| ||||||
Sbjct 502 CAAAACCCTCATTCGCTTCCCTCAACTCGCCAACTTGTATCCCAAGGATGCTCGATGGTT 561
Query 1076 TCACCCCATGA 1086
|| ||| ||||
Sbjct 562 TCTCCCTATGA 572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40448414937
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5