BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G33151.1
Length=3085
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494814 jgi|Araly1|494814|fgenesh2_kg.8__630__AT3G33151.1 909 0.0
> Ahg494814 jgi|Araly1|494814|fgenesh2_kg.8__630__AT3G33151.1
Length=2782
Score = 909 bits (492), Expect = 0.0
Identities = 692/787 (88%), Gaps = 19/787 (2%)
Strand=Plus/Plus
Query 566 GAAGAAGCTGCCAATATggaagaagatggtgaaggaagtaaagtagcggaggaaagagtg 625
||||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||
Sbjct 491 GAAGAAGCTGCCAATATGGAAGAAGATGGTGAAGGAAGTCATGTACCAAAGGAAAGAGTG 550
Query 626 aaagaaagaaag-aagagaggaCCAACAAAGATGCGTAAAGT-G-GA-T--GAAAATCCT 679
|||| ||| ||| || |||||||||||||||||||||||||| | || | |||||||||
Sbjct 551 AAAGTAAG-AAGAAAAAGAGGACCAACAAAGATGCGTAAAGTGGAGACTCAGAAAATCCT 609
Query 680 AATGAAAAGGTTTCAGTTACTTTCACTGACTTTGGTGATCATGTTGGACCTGGTTCAATA 739
||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 610 AATGAAAAGGTTTTAGTTTCTTTCACTGACTTTGGTGATCATGTTGGAACTGGTTCAGTA 669
Query 740 ACATTATCATCTTTTCTTTGTGTCCTTGTGAGGGAACACGTTCCGGTTACACTAGCTGAT 799
|||||||||||||||||| ||||||||||||| |||||| ||||||||||||| || |||
Sbjct 670 ACATTATCATCTTTTCTTGGTGTCCTTGTGAGTGAACACATTCCGGTTACACTTGCCGAT 729
Query 800 TGGAGGAAA-ATTGATGCAGTGGCTAAACAAGCAATGTGGGAAGAAATTCATGTATATAT 858
|||| |||| ||||||||||| ||||| || || |||||||||||||||| ||||||||
Sbjct 730 TGGA-GAAATCTTGATGCAGTGACTAAAGAAACATTGTGGGAAGAAATTCAGGTATATAT 788
Query 859 TTATATGGaa-aaaaaaTTTGGTTGAACATAAATGAAACAGGTGTGACTTTTGATTGTTG 917
||||||| || | ||| ||| |||| | ||||||| || |||| |||| ||||||
Sbjct 789 TTATATGCAACTATTTTTTTTGTTTAACAGATATGAAACTTGTTTGACCTTTGCTTGTTG 848
Query 918 TA-TGTGATGTAGGGGAGGTTTAACTTGCAAGAAGAATGGTAGAGAGTTGTTATTTTTAA 976
|| | ||||| ||||||||||| || || ||||||||||| | | || ||||||| | ||
Sbjct 849 TACT-TGATGCAGGGGAGGTTTGACATGGAAGAAGAATGGAAAAAAGCTGTTATTATGAA 907
Query 977 GCAAATTG-GAAATATCTGGAGGGCTTGGAAGTCAAGGCTAGTTTCAGAAGTACGTGCTG 1035
||||| || | ||||||||||||| | |||||||||||||||| ||| ||||||||||||
Sbjct 908 GCAAA-TGTGTAATATCTGGAGGGGTAGGAAGTCAAGGCTAGTGTCAAAAGTACGTGCTG 966
Query 1036 CGAAGACTA-TTGCTGAGAGAATAGATTTAAAACCCAGCAACATCCCATCCATTCAAGTG 1094
||||||| | |||||||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct 967 CGAAGAC-AGCTGCTGAGAGACTAGCTTTAAAACCCAGCAACATCCCATCCAGTCAAGTG 1025
Query 1095 TGGAACTCTTGGGTTAGGAGCAAGACTAACGCAGCTTTCACGGTTAGTTATCTACAACTA 1154
|||||||||||||||||||||||||||| | || ||||||||||||||||||||||| ||
Sbjct 1026 TGGAACTCTTGGGTTAGGAGCAAGACTAGCACATCTTTCACGGTTAGTTATCTACAAGTA 1085
Query 1155 A-CAACTTTCTTGTTTATATGTCATGGCTGATAGATTTAAT-GTGTTGATATTTATCATG 1212
| || |||||||||||||||||||| | ||||||||||| | |||||||| |||
Sbjct 1086 AGTAAATTTCTTGTTTATATGTCATGTTTTATAGATTTAATCACACTCATATTTATAATG 1145
Query 1213 TAGGAAATAAGTAACAAATACAGGAAGATGAGACAAAATCAGATTCCTCACACCACCAGC 1272
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 TAGGAAATAAGTAACAAGTACAGGAAGATGAGACAAAATCAGATTCCTCACACCACCAGC 1205
Query 1273 CGTAAAGGAATGCTTTGTTTAGCTCATGATATGGTAATAATAGTTGTCAAATATCTATAT 1332
|| |||||||||||| |||||||| ||||| ||||||||||||||||||| |||||||||
Sbjct 1206 CGCAAAGGAATGCTTCGTTTAGCTGATGATTTGGTAATAATAGTTGTCAA-TATCTATAT 1264
Query 1333 ATATTGT 1339
|||||||
Sbjct 1265 ATATTGT 1271
Score = 839 bits (454), Expect = 0.0
Identities = 650/739 (88%), Gaps = 35/739 (5%)
Strand=Plus/Plus
Query 2341 TGATATATCTCTAATCATTAGCTTCTTACATTTTAGCAAACCAAGGAAGGTGAAACTCGA 2400
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 2076 TGATATATCTCTAATCATTAGCCTCTTACATTTTAGCAAAACAAGGAAGGTGAAACTCAA 2135
Query 2401 AGATTCAAAATATATGATT-GGACTAATGAAGACGATGAGGTTATTGCTGAAGGTGTTGT 2459
|||| |||||||| ||||| ||| ||||||||||||||||||||||||||||||| | ||
Sbjct 2136 AGATGCAAAATATTTGATTGGGA-TAATGAAGACGATGAGGTTATTGCTGAAGGTCTCGT 2194
Query 2460 GTGCTCATCTAACTCCAAAGAGAAGGTTAACAATATACCTCTAGAACCAAGTGCTGTTAG 2519
||||||||||||||||||||||| |||||||||||||||||||| ||||||| | ||||
Sbjct 2195 GTGCTCATCTAACTCCAAAGAGAGGGTTAACAATATACCTCTAGGTCCAAGTGTTATTAG 2254
Query 2520 TATTCAAGTTGTGAAGGTGTTCAATGGTAATGCTCATTTGTGGAGGCCAACTACTGATAT 2579
|||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||
Sbjct 2255 TATTCAAGTTGTGAAGGTGTTCAATGATAATGCTCCTTTGTGGAGGCCAACTGCTGATAT 2314
Query 2580 TTGTTTAATGGGTGATGCAATTAACGAGAAAATCGCATGGCCAGTCCTAAAGATTGACGT 2639
| || |||| ||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct 2315 TAGTGTAATTGGTGATGCAATTAACGAGAAAATCGCATGGCCAGTTCAAAAGATTGATGT 2374
Query 2640 CACGGCTGCCA-CCACTACAGATGCAGCACTACCTAAAGTCCAGGTTTGTTATTGTAACC 2698
||||||||| | ||||| |||| || ||||||||||||| || |||||| | || |
Sbjct 2375 CACGGCTGC-AGCCACTCCAGAACCAACACTACCTAAAGTTCA--TTTGTT-T-GT--C- 2426
Query 2699 TTGTTAATTCATTTGTTTGTCTGCTGGTTGATGTTGGAACTTTCATTGATGTTGGAACTT 2758
| | || | ||| || | | | | |||||||||||||||||||||||
Sbjct 2427 T--------C-TT-GATTGA-TG-T--T-G--G----AACTTTCATTGATGTTGGAACTT 2465
Query 2759 GCTTTTATTATTGGCTTTGAGTTGTAGAGTTCAGGCAGCAACAGTTCCACAAAAAGTCCA 2818
|||| ||||||| ||||||||||||||||| |||||||||| |||||||| |||||||||
Sbjct 2466 GCTTCTATTATTTGCTTTGAGTTGTAGAGTCCAGGCAGCAATAGTTCCACCAAAAGTCCA 2525
Query 2819 AAGCAGAAGTGTTTTCTTTTAGATTGCAGCAATTCTGGACATAAGGTAGCTGAAGGAAGA 2878
|||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||
Sbjct 2526 AAGCAGAAGTGTTTTCTTTTAGATTGCAGCAACTCTGGGCGTAAGGTAGCTGAAGGAAGA 2585
Query 2879 GTACTTTCAACAGACCC-GAACGATGCTTGCCATAATGTACCCCTAGGTCCTAATGCAAG 2937
||| |||||||||| || ||| ||| | |||||| |||||||||||||||| ||||||||
Sbjct 2586 GTAATTTCAACAGATCCAGAA-GATACGTGCCATCATGTACCCCTAGGTCCAAATGCAAG 2644
Query 2938 CAAAGTCTGGGTTGAAGTGGCTAAGATTGGTAATGCAATGGTCTGGAGGCCAAATCCAGA 2997
||| ||||| || ||||||||||||||||||||||||| ||| |||||||||| | ||||
Sbjct 2645 CAAGGTCTGTGTAGAAGTGGCTAAGATTGGTAATGCAAAGGTATGGAGGCCAAGTTCAGA 2704
Query 2998 GATCGAATACATTTCTGATGCAATAGGTTCAGTTGTAGCATGGCCAAATGATAAAATAAA 3057
||| | ||| |||||||||||||||||||| ||||||||||||| ||||||||||||| |
Sbjct 2705 GATTGTATATATTTCTGATGCAATAGGTTCTGTTGTAGCATGGC-AAATGATAAAATAGA 2763
Query 3058 GTTCGTGTGAAACTTAGAC 3076
|||||||||||||||||||
Sbjct 2764 GTTCGTGTGAAACTTAGAC 2782
Score = 616 bits (333), Expect = 4e-175
Identities = 454/510 (89%), Gaps = 18/510 (4%)
Strand=Plus/Plus
Query 1369 TATATATGTACTTTATATAGaaaaaaaaaGAGTACAGACCCAAGTAAGGTGACTAGGAGT 1428
||||||| | |||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1260 TATATATATTGTTTATATAGAAAAAAAAAGAGTTCAAACCCAAGTAAGGTGACTAGGAGT 1319
Query 1429 AAGGTATGGATTGCGGGACACACTCATGCTGATGGTAGACCTGTGAAGCCTCAATTTGCT 1488
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AAGGTATGGATTGCGGGACACACTCATGCTGATGGTAGACCTGTGAAGCCTCAATTTGCC 1379
Query 1489 GAGACTATGGTGAGAATTCTGGAACTTGTTATGGCCTGTGTATAAGTAATGGATTATGAT 1548
|||||||| || |||||||||||||||||||| |||||| || ||||| || |||||
Sbjct 1380 GAGACTATTGTAAGAATTCTGGAACTTGTTATAT--TGTGTAAAACTAATGCATCATGAT 1437
Query 1549 AAATTAGttttttt-tGGTTTAAATGTTTGTATGATCAGGAA-CAAATACATTCACTTGA 1606
||| ||||| || || ||||||||||||| | | |||| |||||||| ||| ||||
Sbjct 1438 CAATGAGTTTGCTTGTG-TTTAAATGTTTGTCT---C-GGAAACAAATACAATCATTTGA 1492
Query 1607 TAGTCAAATGGACTCTACATCAGCTTG-TGAAAACATAAGGGAAGATGCTGTGAGCAAGA 1665
|||| |||||||||||||||||||| | ||| |||||||||||| ||| |||||||||||
Sbjct 1493 TAGTGAAATGGACTCTACATCAGCT-GCTGATAACATAAGGGAATATGTTGTGAGCAAGA 1551
Query 1666 TTTTGGGAAAAGACAAACCTGGACGAGTAAGGGGGTTTGGTAGAGGGATTACGGCTACTA 1725
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 TTTTGG-AAAAGACAAACCTGGACGAGTAAGGGGGTTTGGTAGAGGGATTACGGCTACTA 1610
Query 1726 AGTTAGCATTTCTGCAAGCTAGAGACGCAAAGATGGCAGAAATGCAAAGTGAGATTCAGG 1785
||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||| | |
Sbjct 1611 AGTTAGCGTTTCTGCAAGCTAGAGACGAAAAGATGGCAGAAATGAAAAGTGAGATTGATG 1670
Query 1786 AGTTAAAGGGAATGGTCCGAGACTTAGCTGGAAA-AAAGGTAAACTGTCCTTGTTCCTTA 1844
|||||||||||||| | |||||||||||||||| |||| |||| | ||||| |||||||
Sbjct 1671 AGTTAAAGGGAATGTTTAGAGACTTAGCTGGAAAGAAAG-TAAAAT-TCCTT-TTCCTTA 1727
Query 1845 TCTCAGTTAAAGGGAATGATGATACTGAAA 1874
|||||| |||| |||| ||||||| |||
Sbjct 1728 TCTCAGA-AAAGT-AATGGTGATACTTAAA 1755
Score = 610 bits (330), Expect = 2e-173
Identities = 462/520 (89%), Gaps = 32/520 (6%)
Strand=Plus/Plus
Query 43 GGTTTCGATTATGATTTTTGGGTTTCGGTTGAAACTGTTCTTCATTTATCAGTTTCAGAA 102
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 2 GGTTTCGATTATGATTTTTGGGTTTCGATTGAAGCTGTTCTTCATTTATCAGTTTCAGAA 61
Query 103 ATGGTGAAGACAAGAGGTGGAGGTAAAGTTGGTTCTCGTCGTAGTAGACGTAACCAAGGC 162
|||| |||||||||||| |||||| |||||||||||||||||||||| ||||| ||||||
Sbjct 62 ATGGCGAAGACAAGAGGAGGAGGTCAAGTTGGTTCTCGTCGTAGTAGGCGTAATCAAGGC 121
Query 163 TTGGAGGTAGAAGATATAACACCACAAGTTGCTCCTGCAACAACATTaaaggtgaataag 222
||||||||||||||| | ||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 122 TTGGAGGTAGAAGATGTTACACCACCAGTTGCTCCTGCAACAACACTAAAGGTGAATAAG 181
Query 223 aaaagaaaagcaaagaaagtggctac-a-a-g-a--a---gaagcaagaaaaTGGCTGCT 273
|||||||||||||||||||||| ||| | | | | | ||||||||||| ||||||||
Sbjct 182 AAAAGAAAAGCAAAGAAAGTGGGTACGAGAAGTAGTACTAGAAGCAAGAAAGTGGCTGCT 241
Query 274 CGAGATGATGAGGTAGAAGATGTTACACC------T---GTAGATGATGAGGTAGAAGAT 324
| ||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 242 CAAGATGATGAGGTAGAAGATGTTACACCGCAAGATAATGTAGATGATGAGGTAGAAGAT 301
Query 325 GTGACACCGCAAGATGATGAGGTAGA-AGATGTTACACCGGATGTTGTGGAAGAAGAGAA 383
|| ||||||||||||||| ||| || || ||| |||||||| |||||||||||||||||
Sbjct 302 GTTACACCGCAAGATGATTTGGTTGATAG-TGTAACACCGGAAGTTGTGGAAGAAGAGAA 360
Query 384 GGGTAATGACAAAGA---TGTAACAGTACCGGAGGCTGATCAGACTGAGAAAGCAAATGT 440
||||||||||||||| ||||||| ||||||||||||||||||||||| |||| |||
Sbjct 361 GGGTAATGACAAAGAAGATGTAACA---CCGGAGGCTGATCAGACTGAGAATGCAA-TGT 416
Query 441 CTGAAGATGAGAAAGAAGATTCTGAGATAGAAGGAGAAGCTTGTTTGACTGGACAAGAAC 500
||||||||||||||||||||| ||||||||||||||||||||| |||||| |||| ||||
Sbjct 417 CTGAAGATGAGAAAGAAGATTTTGAGATAGAAGGAGAAGCTTGCTTGACTAGACAGGAAC 476
Query 501 AGCA-G--GA-GAATGAAGAAGCTGCCAATATGGAAGAAG 536
||| | || ||| |||||||||||||||||||||||||
Sbjct 477 CGCAAGACGATGAA-GAAGAAGCTGCCAATATGGAAGAAG 515
Score = 472 bits (255), Expect = 9e-132
Identities = 333/370 (90%), Gaps = 7/370 (2%)
Strand=Plus/Plus
Query 1903 TAATAATT-CTTGTTCCTTATCTCAGAAAAGTTACAATGATACTGAAACATCTGAGAGTT 1961
||| |||| ||| ||||||||||||||||||| | ||||||| ||| || |||||||
Sbjct 1710 TAA-AATTCCTT-TTCCTTATCTCAGAAAAGTAATGGTGATACTTAAATATGTGAGAGTA 1767
Query 1962 TTGGTGGATTCAAAGA-AGGAGTTAGAGTACAAATATTAGATTGGATTCATTCAGGAGAT 2020
||||||||| ||| | | ||||||||||||||||| | ||||||||||||||||||||
Sbjct 1768 GTGGTGGATT-AAAAATAAGAGTTAGAGTACAAATACTGGATTGGATTCATTCAGGAGAA 1826
Query 2021 GTAGTTGTAGGTGAAGGAGAATTGTGTTCTGCTGAACCGATGTACAAAATTGGTCGTATA 2080
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1827 GTAGTTGTTGGTGAAGGAGAATTCTGTTCTGCTGAACCGATGTACAAAATTGGTCGTATA 1886
Query 2081 CCAATTGGTCCTAATGCAATGGTTGTCCTTGTTAAGTCTGCACTAAGCTTAGAAGCTTCT 2140
|||||||||||||||| ||||||||||||||||||||||| |||||||| | ||||||||
Sbjct 1887 CCAATTGGTCCTAATGAAATGGTTGTCCTTGTTAAGTCTGTACTAAGCTCAAAAGCTTCT 1946
Query 2141 CTGTGGAGGCCTACAACAGATGTGTTATATCTTGAAGAAGCTGTGGGATGCAAAATACCT 2200
|| |||||||||||| ||||||||||||||||||| |||||||| |||| ||||||||||
Sbjct 1947 CTCTGGAGGCCTACATCAGATGTGTTATATCTTGAGGAAGCTGTTGGATACAAAATACCT 2006
Query 2201 TGGCCAATAGACAAAGTGCTTTTGTATAAGGG-TCCAGCCGCTTCTGAAGATGTATCCAT 2259
|||||||| ||||||||||||||||||| | | ||||| | |||||||||||||||||||
Sbjct 2007 TGGCCAATGGACAAAGTGCTTTTGTATA-GCGATCCAGTCACTTCTGAAGATGTATCCAT 2065
Query 2260 GGTCAAGTTT 2269
||| ||||||
Sbjct 2066 GGTAAAGTTT 2075
Score = 56.5 bits (30), Expect = 1e-06
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 334 CAAGATGATGAGGTAGAAGATGTTACACCG 363
||||||||||||||||||||||||||||||
Sbjct 242 CAAGATGATGAGGTAGAAGATGTTACACCG 271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116518059455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5