BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G33187.1

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg916283 jgi|Araly1|916283|Al_scaffold_0008_1034                    311    2e-84


> Ahg916283 jgi|Araly1|916283|Al_scaffold_0008_1034
Length=219

 Score =  311 bits (168),  Expect = 2e-84
 Identities = 194/207 (94%), Gaps = 0/207 (0%)
 Strand=Plus/Plus

Query  1    ATGTACTTATCTTCTAGAACTGGTAGTCGATTACTGTTCCTTGTGAAAGCATCATTTAAT  60
            |||||| || ||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct  1    ATGTACGTACCTTCTGGAACTGGTAGTCGATTACTGTTCCTTGTCAAAGCATCATTTAAT  60

Query  61   ACTTTTGAGAAAGTTGCAACCATTTCTTCAACACTAATATATTTCGTATCGCATAAACTT  120
            |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  61   ACTTTTGAAAAAGTTGCAACCATTTCTTCAACACTAATATATTTTGTATCGCATAAACTT  120

Query  121  GTCAGCTCCCGGAGTTGTTCACATAACTTCAGAAATATTTGTGGATATATTCGACACAAC  180
            ||| |||||||||||| || ||||||||| ||||||||||||||||| |||||| |||||
Sbjct  121  GTCTGCTCCCGGAGTTCTTTACATAACTTAAGAAATATTTGTGGATACATTCGATACAAC  180

Query  181  TGTCGAAAATGCATAAGGTTTTGCTTT  207
            ||||||||||||||| |||||||||||
Sbjct  181  TGTCGAAAATGCATAGGGTTTTGCTTT  207



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9317935684


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5