BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G33187.1 Length=267 Score E Sequences producing significant alignments: (Bits) Value Ahg916283 jgi|Araly1|916283|Al_scaffold_0008_1034 311 2e-84 > Ahg916283 jgi|Araly1|916283|Al_scaffold_0008_1034 Length=219 Score = 311 bits (168), Expect = 2e-84 Identities = 194/207 (94%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 1 ATGTACTTATCTTCTAGAACTGGTAGTCGATTACTGTTCCTTGTGAAAGCATCATTTAAT 60 |||||| || ||||| |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1 ATGTACGTACCTTCTGGAACTGGTAGTCGATTACTGTTCCTTGTCAAAGCATCATTTAAT 60 Query 61 ACTTTTGAGAAAGTTGCAACCATTTCTTCAACACTAATATATTTCGTATCGCATAAACTT 120 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 61 ACTTTTGAAAAAGTTGCAACCATTTCTTCAACACTAATATATTTTGTATCGCATAAACTT 120 Query 121 GTCAGCTCCCGGAGTTGTTCACATAACTTCAGAAATATTTGTGGATATATTCGACACAAC 180 ||| |||||||||||| || ||||||||| ||||||||||||||||| |||||| ||||| Sbjct 121 GTCTGCTCCCGGAGTTCTTTACATAACTTAAGAAATATTTGTGGATACATTCGATACAAC 180 Query 181 TGTCGAAAATGCATAAGGTTTTGCTTT 207 ||||||||||||||| ||||||||||| Sbjct 181 TGTCGAAAATGCATAGGGTTTTGCTTT 207 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9317935684 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5