BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G33520.1
Length=1474
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484760 jgi|Araly1|484760|fgenesh2_kg.5__752__AT3G33520.1 2237 0.0
> Ahg484760 jgi|Araly1|484760|fgenesh2_kg.5__752__AT3G33520.1
Length=1363
Score = 2237 bits (1211), Expect = 0.0
Identities = 1316/1367 (96%), Gaps = 5/1367 (0%)
Strand=Plus/Plus
Query 52 CGGCGGCGAGTCATCGTCATCAATGTCAAACATCGTTGTTCTAGACAACGGCGGTGGTCT 111
||||||||||| ||||||| |||||||||||||||| |||||||| |||||||| |||||
Sbjct 1 CGGCGGCGAGTGATCGTCACCAATGTCAAACATCGTGGTTCTAGATAACGGCGGCGGTCT 60
Query 112 AATCAAAGCCGGACAAGGCGGCGAGCGTGATCCCACCACCGTAATCCCGAACTGTCTCTA 171
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 AATCAAAGCCGGACAAGGCGGCGAGCGTGATCCCACCACCGTAATCCCAAACTGTCTCTA 120
Query 172 CAAACCTCTCTCTTCCAAAAAATTCATCCACCCATCACCACTCACCACTCTCTCCGACGA 231
|||||||||||| ||||| |||||| ||||||||||||||||||||| ||||||||||||
Sbjct 121 CAAACCTCTCTCCTCCAAGAAATTCCTCCACCCATCACCACTCACCAGTCTCTCCGACGA 180
Query 232 AATCGACCTCACCTCCGCCGCCGTACGCCGCCCAATCGACCGTGGCTACCTCATAAACTC 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AATCGACCTCACCTCCGCCGCCGTACGCCGCCCAATCGACCGTGGCTACCTCATAAACTC 240
Query 292 CGACCTACAACGCGAAATCTGGTCACACCTATTCACTtccctcctccacat-agctcctt 350
||| |||||||||||||||||||||||||||||||||| |||||||||| | ||||||
Sbjct 241 CGATTTACAACGCGAAATCTGGTCACACCTATTCACTTCTTTCCTCCACATCA-CTCCTT 299
Query 351 cctcctcctctctcctcctcACCGAAGCACCACTCTCAATCCCTTCCGTTCAACGAACCA 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCTCCTCCTCTCTCCTCCTCACCGAAGCACCACTCTCAATCCCTTCCGTTCAACGAACCA 359
Query 411 CCGACGAACTCGTCTTCGAAGATTTCGGATTCTCTTCTCTCTATATAGCTCATCCTCAAT 470
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 360 CCGACGAGCTCGTCTTCGAAGATTTCGGATTCTCTTCTCTCTATGTAGCTCATCCTCAAT 419
Query 471 CTCTTGTTCATCTCTATGAAGCTAGTCGTCAGCCTGATTCAATCCTCTCAAAGACTCAGT 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTCTTGTTCATCTCTATGAAGCTAGTCGTCAGCCTGATTCAATCCTCTCAAAGACTCAGT 479
Query 531 GTAGTCTCGTTGTTGATTGTGGTTTCTCCTTCACTCACGCTGTTCCTGTTCTTCACAATT 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTAGTCTCGTTGTTGATTGTGGTTTCTCCTTCACTCACGCTGTTCCTGTTCTTCACAATT 539
Query 591 TCACTCTTAATCACGCCATTAAGAGGATTGATTTAGGAGGAAAAGCTTTTACTAATTACT 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCACTCTTAATCACGCCATTAAGAGGATTGATTTAGGAGGAAAAGCTTTTACTAATTACT 599
Query 651 TGAAGGAATTGGTTTCTTATAGATCTATTAATGTTATGGATGAAACTTTTTTAGTTGATG 710
||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 600 TGAAGGAATTGGTGTCTTATAGATCTATCAATGTTATGGATGAAACGTTTTTAGTTGATG 659
Query 711 ATGCTAAAGAGAAGCTTTGTTTTGTTTCACTTGATCTTCTTCGTGATCTCCGCCTTGCTA 770
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 660 ATGCTAAGGAGAAGCTTTGTTTTGTTTCACTTGATCTTCTTCGCGATCTCCGCCTTGCTC 719
Query 771 GAAATGGGAACACTCTTATCAAGTCTACTTATGTTCTTCCTGATGGTGTTACACATACCA 830
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GAAATGGAAACAATCTTATCAAGTCTACTTATGTTCTTCCTGATGGTGTTACACATACCA 779
Query 831 AAGGCTATGTTAAAGACCCTCAAGCTGCTAAGAGGTTTCTTAGTTTGTCAGAGAAAGAGT 890
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AAGGTTATGTTAAAGACCCTCAAGCTGCTAAGAGGTTTCTTAGTTTGTCAGAGAAAGAG- 838
Query 891 CTGTGGTGGTGATGGATAAGGTTGGGGAGAGAAAGAAGGCTGACATGAACAAAAATGAGA 950
| || ||||||||||||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct 839 CA-TG-TGGTGATGGATAAGGTTGGGGAGAGGAGGAAGGCTGACATGAACAAAAACGAGA 896
Query 951 TTGATTTAACGAATGAGCGTTTTCTTGTACCTGAGACGTTATTCCAGCCTGCAGATTTAG 1010
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 897 TTGACTTAACGAATGAGCGTTTTCTTGTACCTGAGACGTTATTCCAGCCTGCGGATCTAG 956
Query 1011 GGATGAATCAGGCGGGACTTGCAGAGTGCATTGTCCGAGCTATAAACTCATGCCATTCTT 1070
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 957 GGATGAATCAGGCGGGACTTGCAGAATGCATTGTCCGAGCTATAAACTCATGCCATTCTT 1016
Query 1071 ACTTGCAACCAGTTTTGTATCAAAGCATTATCTTAACTGGTGGAAGTACATTATTTCCAC 1130
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1017 ACTTGCAACCAGTTTTGTATCAAAGCATCATCTTAACTGGTGGAAGCACATTATTTCCAC 1076
Query 1131 AACTTAAGGAGAGACTAGAAGGAGAGCTTCGACCACTTGTCCCAGATCACTTTGATGTGA 1190
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1077 AACTTAAGGAGAGACTAGAAGGAGAGCTGCGACCACTTGTCCCCGATCACTTTGATGTGA 1136
Query 1191 AGATAACAACTCAGGAGGACCCCATACTAGGTGTATGGAGAGGTGGTTCACTTTTGGCTT 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AGATAACAACTCAGGAGGACCCCATACTAGGTGTATGGAGAGGTGGTTCACTTTTGGCTT 1196
Query 1251 CCAGCCCGGATTTCGAGTCCATGTGTGTCACCAAGGCTGAGTACGAAGAACTTGGATCAG 1310
| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1197 CGAGCCCGGATTTTGAGTCCATGTGTGTCACCAAGGCTGAGTACGAAGAGCTTGGATCAG 1256
Query 1311 CTCGGTGTCGTAGACGATTCTTTCATTGAGGCTAACCAAAACAATATCACATGAGTTGGT 1370
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1257 CTCGGTGTCGTAGAAGATTCTTTCATTGAGGCTAACCAAAACAATATCAAATGAGTTGGT 1316
Query 1371 TGTAAGTTGAAATTCTTCACATTATTTGTCGTATATTGTAATGCATG 1417
||||||||| ||||||||||||||| ||||| |||| ||||||||||
Sbjct 1317 TGTAAGTTGTAATTCTTCACATTATGTGTCGAATATCGTAATGCATG 1363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55154674760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5