BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G33528.1
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931110 jgi|Araly1|931110|scaffold_303567.1 468 3e-131
Ahg336838 jgi|Araly1|336838|fgenesh1_pg.C_scaffold_1003403 444 5e-124
Ahg891033 jgi|Araly1|891033|Al_scaffold_0007_3019 433 1e-120
Ahg327748 jgi|Araly1|327748|fgenesh1_pm.C_scaffold_6002968 331 4e-90
Ahg347316 jgi|Araly1|347316|fgenesh1_pg.C_scaffold_5000708 318 3e-86
Ahg481453 jgi|Araly1|481453|fgenesh2_kg.4__513__AT3G33528.1 311 5e-84
Ahg323054 jgi|Araly1|323054|fgenesh1_pm.C_scaffold_5000598 150 1e-35
> Ahg931110 jgi|Araly1|931110|scaffold_303567.1
Length=466
Score = 468 bits (253), Expect = 3e-131
Identities = 339/380 (89%), Gaps = 8/380 (2%)
Strand=Plus/Plus
Query 384 GAATATAGAGAATTGAGAGATGGGTGATAGTCAAGAATTCTCAGAAGTTCCTGATCTAAG 443
||||| | |||||| |||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 2 GAATAGAAAGAATTAAGAGATGGATGATAGTGAAGAATTCTCAGAAGTTCCTGATCTAAG 61
Query 444 TCAA-TGGTGTTCGAGTTATATCTATGAGTCACCGATGATGGATACAAGTGATGGTCTTG 502
| || |||| |||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 62 T-AAGTGGTTTTCGAGTTATGTCTATGAGTCACCGATGTTGGATACAAGTGATGGTCTTG 120
Query 503 GGTTTGCTTTTCTTGGAGAAAGTAAAAGTATAAAGGAAATGGAATTAGTCTCTTCTCACG 562
|||| ||| |||||||||||| ||| ||||||||||||||||||||||||||| |
Sbjct 121 AGTTT-CTT-----GGAGAAAGTAAAGGTACAAAGGAAATGGAATTAGTCTCTTCTCAGG 174
Query 563 CTAAAGATATGTCTCAGTCCCAAATTGAGTTTTCAGAAGATATTATGAATCTCGTCGTTG 622
|||||||||||||||| || || ||||||||||||||||||| ||||||||||||||||
Sbjct 175 CTAAAGATATGTCTCAATCACAGGTTGAGTTTTCAGAAGATATAATGAATCTCGTCGTTG 234
Query 623 AGGACAGTGAGATAGATGAAGACAACAGTCTTTGGGGAAAACCTAAGAGAAAAGGTAGCA 682
|||||||||| |||||||||||| |||| ||||||||||| |||| |||||||||||||
Sbjct 235 AGGACAGTGACATAGATGAAGACTGCAGTATTTGGGGAAAATCTAATAGAAAAGGTAGCA 294
Query 683 ATGTTTTCCGAAAACCTAAGAGAAAGGATGAGACTACAACAACCTATGAAGCTGAGCTAA 742
| |||| ||| |||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 295 GTATTTTTCGAGAACCTAAGAGAAAGGAAGAGACTACAACAACCTGTGAAGCTGAGCTAA 354
Query 743 ATTACTTGAAGAACCGAGTC 762
|| ||||| ||| ||||||
Sbjct 355 CTTCCTTGAGGAATCGAGTC 374
> Ahg336838 jgi|Araly1|336838|fgenesh1_pg.C_scaffold_1003403
Length=690
Score = 444 bits (240), Expect = 5e-124
Identities = 312/346 (90%), Gaps = 8/346 (2%)
Strand=Plus/Plus
Query 418 GAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTATATCTATGAGTCACC 476
||||||||||||||||||||||||||| || |||| |||||||||| |||||||||||||
Sbjct 280 GAATTCTCAGAAGTTCCTGATCTAAGT-AAGTGGTTTTCGAGTTATGTCTATGAGTCACC 338
Query 477 GATGATGGATACAAGTGATGGTCTTGGGTTTGCTTTTCTTGGAGAAAGTAAAAGTATAAA 536
|||| |||||||||||||||||||| | | |||||||||||||||||| ||| |||
Sbjct 339 GATGTTGGATACAAGTGATGGTCTT--G--AG--TTTCTTGGAGAAAGTAAAGGTACAAA 392
Query 537 GGAAATGGAATTAGTCTCTTCTCACGCTAAAGATATGTCTCAGTCCCAAATTGAGTTTTC 596
|||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||
Sbjct 393 GGAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATCGCAGGTTGAGTTTTC 452
Query 597 AGAAGATATTATGAATCTCGTCGTTGAGGACAGTGAGATAGATGAAGACAACAGTCTTTG 656
||||||||| |||||||||||||||||||| |||||||||||||||||| |||| ||||
Sbjct 453 AGAAGATATAATGAATCTCGTCGTTGAGGATAGTGAGATAGATGAAGACTGCAGTATTTG 512
Query 657 GGGAAAACCTAAGAGAAAAGGTAGCAATGTTTTCCGAAAACCTAAGAGAAAGGATGAGAC 716
|||||||||||||||||||||||||| | |||| |||||||||||||||| ||| |||||
Sbjct 513 GGGAAAACCTAAGAGAAAAGGTAGCAGTATTTTTCGAAAACCTAAGAGAATGGAAGAGAC 572
Query 717 TACAACAACCTATGAAGCTGAGCTAAATTACTTGAAGAACCGAGTC 762
|||||||| ||||||||||||||||| || ||||| ||| ||||||
Sbjct 573 TACAACAAGCTATGAAGCTGAGCTAACTTCCTTGAGGAATCGAGTC 618
> Ahg891033 jgi|Araly1|891033|Al_scaffold_0007_3019
Length=426
Score = 433 bits (234), Expect = 1e-120
Identities = 320/361 (89%), Gaps = 8/361 (2%)
Strand=Plus/Plus
Query 403 ATGGGTGATAGTCAAGAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTA 461
|||| ||||||| |||||||||||||||||||| ||||||| ||| |||| |||||||||
Sbjct 1 ATGGATGATAGTGAAGAATTCTCAGAAGTTCCTAATCTAAG-CAAGTGGTTTTCGAGTTA 59
Query 462 TATCTATGAGTCACCGATGATGGATACAAGTGATGGTCTTGGGTTTGCTTTTCTTGGAGA 521
| ||||||||||||||||| |||||||||||||| ||||| | | ||||||| |||
Sbjct 60 TGTCTATGAGTCACCGATGTTGGATACAAGTGATTGTCTT--G--AG--TTTCTTGAAGA 113
Query 522 AAGTAAAAGTATAAAGGAAATGGAATTAGTCTCTTCTCACGCTAAAGATATGTCTCAGTC 581
||||||| ||| ||| ||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 114 AAGTAAAGGTACAAAAGAAATGGAATTAGTCTCTTCTCATGCTAAAGACATGTCTCAATT 173
Query 582 CCAAATTGAGTTTTCAGAAGATATTATGAATCTCGTCGTTGAGGACAGTGAGATAGATGA 641
|| ||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||
Sbjct 174 GCAGGTTGAGTTTTCAGAAGGTATAATGAATCTCGTCGTTGAGGACAGTGACATAGATGA 233
Query 642 AGACAACAGTCTTTGGGGAAAACCTAAGAGAAAAGGTAGCAATGTTTTCCGAAAACCTAA 701
|||| |||| |||||||||||||||||||||||||||||| | |||| |||||||||||
Sbjct 234 AGACTGCAGTATTTGGGGAAAACCTAAGAGAAAAGGTAGCAGTATTTTTCGAAAACCTAA 293
Query 702 GAGAAAGGATGAGACTACAACAACCTATGAAGCTGAGCTAAATTACTTGAAGAACCGAGT 761
||||||||| |||||||||||||||||||||||||| |||| || ||||||||| |||||
Sbjct 294 GAGAAAGGAAGAGACTACAACAACCTATGAAGCTGAACTAACTTCCTTGAAGAATCGAGT 353
Query 762 C 762
|
Sbjct 354 C 354
> Ahg327748 jgi|Araly1|327748|fgenesh1_pm.C_scaffold_6002968
Length=303
Score = 331 bits (179), Expect = 4e-90
Identities = 244/274 (89%), Gaps = 10/274 (4%)
Strand=Plus/Plus
Query 403 ATGGGTGATAGTCAAGAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTA 461
|||| ||||||| ||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct 1 ATGGATGATAGTGAAGAATTCTCAGAAGTTCCTGATCTAAGT-AAGTGGTTTTCGAGTTA 59
Query 462 TATCTATGAGTCACCGATGATGGATACAAGTGATGGTCTTGGGTTTGCTTTTCTTGGAGA 521
| ||||||||||||||||| ||||||||||||||||||||| |||| ||| |||||
Sbjct 60 TGTCTATGAGTCACCGATGTTGGATACAAGTGATGGTCTTGAGTTT-CTT-----GGAGA 113
Query 522 AAGTAAAAGTATAAAGGAAATGGAATTAGTCTCTTCTCACGCTAAAGATATGTCTCAGTC 581
||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 114 AAGTAAAGGTACAAAGGAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAATC 173
Query 582 CCAAATTGAGTTTTCAGAAGATATTATGAATCTCGTCGTTGAGGACAGTGAGATAGATGA 641
|| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 174 GCAGGTTGAGTTTTCAGAAGATATAATGAATCTCGTCGTTGAGGATAGTGAGATAGATGA 233
Query 642 AGACA--ACAGTCTTTGGGGAAAACCTAAGAGAA 673
|||| ||||| ||| |||||||||||||||
Sbjct 234 AGACTGCACAGTATTTTTCGAAAACCTAAGAGAA 267
> Ahg347316 jgi|Araly1|347316|fgenesh1_pg.C_scaffold_5000708
Length=423
Score = 318 bits (172), Expect = 3e-86
Identities = 298/355 (84%), Gaps = 23/355 (6%)
Strand=Plus/Plus
Query 415 CAAGAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTATATCTATGAGTC 473
|||||||||||||||||||||||||||||| || |||| |||||||||| ||||||| ||
Sbjct 76 CAAGAATTCTCAGAAGTTCCTGATCTAAGT-AAGTGGTTTTCGAGTTATGTCTATGAATC 134
Query 474 ACCGATGATGGATACAAGTGATGGTCTTGGGTTTGCTTTTCTTGGAGAAAGTAAAAGTAT 533
|||||| ||||||||||||||||||||| |||| |||||| || |||||||||| ||||
Sbjct 135 GCCGATGCTGGATACAAGTGATGGTCTTGAGTTTTCTTTTCCTGAAGAAAGTAAAGGTAT 194
Query 534 AAAGGAAATGGAATTAGTCTCTTCTCACGCTAAAGATATGTCTCAGTCCCAAATTGAGTT 593
|||||| |||||||||||||||||||| | |||||||| ||||||||| ||| ||| |||
Sbjct 195 AAAGGATATGGAATTAGTCTCTTCTCAGGTTAAAGATAAGTCTCAGTCGCAAGTTGCGTT 254
Query 594 TTCAGAAGATATTATG-AATCTCGTCGTTGAGGACAGTGA-GATAGATGAAGACAACA-- 649
|||||| || || | | || ||||||||||||||||| | |||||||||| ||||
Sbjct 255 TTCAGA-GA-AT-ACGGAA----GTCGTTGAGGACAGTGAAG-TAGATGAAGAAAACAAT 306
Query 650 -GTCTTTGGGGAAAACCTAAGAGAAAAG-GTAGCAATG-T-TTTCC-GAAAACCTAAGAG 704
|| |||||||||| ||||||| ||||| | | || | | ||| ||||||||| |||
Sbjct 307 AGTATTTGGGGAAAGCCTAAGA-AAAAGCGCATCAGTACTATTTGGAGAAAACCTATGAG 365
Query 705 AAAGGATGAGACTACAACAAC--C-TATGAAGCTGAGCTAAATTACTTGAAGAAC 756
|||| | ||| |||||||||| | |||||||||||||||| || ||||| ||||
Sbjct 366 AAAGAAAGAGCCTACAACAACAACCTATGAAGCTGAGCTAACTTCCTTGAGGAAC 420
> Ahg481453 jgi|Araly1|481453|fgenesh2_kg.4__513__AT3G33528.1
Length=246
Score = 311 bits (168), Expect = 5e-84
Identities = 228/255 (89%), Gaps = 11/255 (4%)
Strand=Plus/Plus
Query 403 ATGGGTGATAGTCAAGAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTA 461
|||| ||||||| ||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct 1 ATGGATGATAGTGAAGAATTCTCAGAAGTTCCTGATCTAAGT-AAGTGGTTTTCGAGTTA 59
Query 462 TATCTATGAGTCACCGATGATGGATACAAGTGATGGTCTTGGGTTTGCTTTTCTTGGAGA 521
| ||||||||||||||||| |||||||||||||||||||| | | |||||||||||
Sbjct 60 TGTCTATGAGTCACCGATGTTGGATACAAGTGATGGTCTT--G--AG--TTTCTTGGAGA 113
Query 522 AAGTAAAAGTATAAAGGAAATGGAATTAGTCTCTTCTCACGCTAAAGATATGTCTCAGTC 581
||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 114 AAGTAAAGGTACAAAGGAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAGTC 173
Query 582 CCAAATTGAGTTTTCAGAAGATATTATGAATCTCGTCGTTGAGGACAGTGAGATAGATGA 641
|| |||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 174 GCAGGTTGAGTTTTC---AGATATAATGAATCTCGTCGTTGAGGACAGTGAGATAGATGA 230
Query 642 AGACAACAGTCTTTG 656
|||| |||| ||||
Sbjct 231 AGACTGCAGTATTTG 245
> Ahg323054 jgi|Araly1|323054|fgenesh1_pm.C_scaffold_5000598
Length=264
Score = 150 bits (81), Expect = 1e-35
Identities = 101/110 (92%), Gaps = 3/110 (3%)
Strand=Plus/Plus
Query 403 ATGGGTGATAGTCAAGAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTA 461
|||| ||||||| ||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct 1 ATGGATGATAGTGAAGAATTCTCAGAAGTTCCTGATCTAAGT-AAGTGGTTTTCGAGTTA 59
Query 462 TATCTATGAGTCACCGATGATGGATACAAGTGATGGTCTTGGGTTTGCTT 511
| ||||||||||||||||| ||||||||||||||||||||| |||| |||
Sbjct 60 TGTCTATGAGTCACCGATGTTGGATACAAGTGATGGTCTTGAGTTT-CTT 108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28210958580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5