BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G36659.1
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340860 jgi|Araly1|340860|fgenesh1_pg.C_scaffold_3000623 664 0.0
> Ahg340860 jgi|Araly1|340860|fgenesh1_pg.C_scaffold_3000623
Length=981
Score = 664 bits (359), Expect = 0.0
Identities = 406/429 (95%), Gaps = 2/429 (0%)
Strand=Plus/Plus
Query 364 AACCCGCCATTGTTATCTCCGGAGATCAAAACCATTTGCGGCAAAACCGATAACCCTCCG 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 AACCCGCCATTGTTATCTCCGGAGATCAAAACCATTTGCGGCAAAACCGATAACCCTCCG 411
Query 424 TTATGCGAATCTTCCGTTAGTCCTCTCTTAACGCCTCAACTGAAACCAAACACTTCCTCC 483
|||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 412 TTATGCAAATCTTCCGTTAGTCCTCTGTTAACGCCTCAACTGAAACCAGACACTTCCTCC 471
Query 484 GTCCTCATTCTCGCTATTCAAGCTTCGATCACCGCGACCAAGGCGGCCATGGCCATCGTC 543
|||||||||||||| ||||||||||| || | ||||||||||||||| ||||||| |||
Sbjct 472 GTCCTCATTCTCGCGATTCAAGCTTCCATTAACGCGACCAAGGCGGCGATGGCCACCGTG 531
Query 544 GAAAAAGTC-GACGCCTCCGATTGTCAGGAGTTATATGATGATGCAGTTGTGAATTTGGA 602
||||||| | | ||||||||||||||||||||| || ||||| || ||||||||||||||
Sbjct 532 GAAAAAG-CAGGCGCCTCCGATTGTCAGGAGTTGTACGATGACGCCGTTGTGAATTTGGA 590
Query 603 AGATGCAGTTAACGCCGTCAAGTCAAGTGACATTGCCACCGTTAACACAAACTTGAGCGC 662
||| || ||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 591 AGACGCGGTTAACGCCGTTAAGTCACGTGACATTGCCACCGTTAACACAAACTTGAGCGC 650
Query 663 AGCGATGACAGATTACAGCACGTGTAACGACGGTTTTGAAGAATCGGGAGAGCCTAACCC 722
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 651 AGCGATGACAGATTACAGCACGTGTAACGACGGTTTTGAAGAAGCGGGAGAGCCTAACCC 710
Query 723 GTTGGCTTACGTGGCCGATAAGCTTACGAAGATGGTTAGTAACTGTCTCGCCATCTCTAC 782
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 GTTGGCTGACGTGGCCGATAAGCTTACGAAGATGGTTAGTAACTGTCTCGCCATCTCTAC 770
Query 783 GTTGATCAA 791
|||||||||
Sbjct 771 GTTGATCAA 779
Score = 326 bits (176), Expect = 2e-88
Identities = 299/355 (84%), Gaps = 22/355 (6%)
Strand=Plus/Plus
Query 1 ATGGAGTTC-AACAAAACCTATCGGATCATCGTGATCTTCACGGTTTCTATTTTGGTCAC 59
|||||| || || ||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAG-TCGAATAAAACCTTTTGGATCATCGTGATCTTCACGGTTTCTATTTTGGTCAC 59
Query 60 CATCTCTACGCATGTAG------AA--T---CCA------G-ATCAGATTCTCCATTTTC 101
|||||||||| ||||| || | ||| | |||||| ||||||| | |
Sbjct 60 GATCTCTACGCCTGTAGAATCCAAATGTGCACCACCTTCCGAATCAGAGTCTCCATCTCC 119
Query 102 GACACCAGCTCCGGCACCGGAAGTTATGAAACCTATCGCTAGTCCTGCAAATTCTCCGGC 161
| |||| ||||||| || |||||||||||||| ||| ||||||| ||||||||||||||
Sbjct 120 GGCACCTGCTCCGGGACAAGAAGTTATGAAACCGATCACTAGTCCGGCAAATTCTCCGGC 179
Query 162 GGAGATATATACAGACTCTCCCGTTGCGTCTCCAGAAGCTCCAGCAGATTCATTTTCCCC 221
|||| || ||||| ||||||||| ||||| ||||||||||| || |||||| |||||||
Sbjct 180 GGAGTTAGATACATACTCTCCCGCGGCGTCACCAGAAGCTCCCGCCGATTCAATTTCCCC 239
Query 222 AAAAAATCCTCCGGTC-GAGATAGATATATACTCTCCCGCAGCGTCACCAGAGGCTCCTG 280
|| ||| |||||| | |||| |||||| ||||||||||||||||||||||||||||||
Sbjct 240 AACGAATGCTCCGG-CGGAGACAGATATCGACTCTCCCGCAGCGTCACCAGAGGCTCCTG 298
Query 281 TCGCATCACCAGAAGCTCCTGCGGAGTCTTCCTCTGCTGCACCATCTGGAATCAA 335
|||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 299 TCGCGTCACCAGAAGCTCCCGCCGAGTCTTCCTCTGCTGCACCATCTGGAATCAA 353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29354646090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5