BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G41979.1

Length=164
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg931988 jgi|Araly1|931988|scaffold_304445.1                        298    8e-81


> Ahg931988 jgi|Araly1|931988|scaffold_304445.1
Length=1116

 Score =  298 bits (161),  Expect = 8e-81
 Identities = 161/161 (100%), Gaps = 0/161 (0%)
 Strand=Plus/Plus

Query  4    ACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGA  63
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGA  60

Query  64   TACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCC  123
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCC  120

Query  124  CAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAA  164
            |||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAA  161



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 5384544801


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5