BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G42050.1
Length=1900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944496 jgi|Araly1|944496|scaffold_700725.1 1149 0.0
Ahg897231 jgi|Araly1|897231|Al_scaffold_0005_1197 538 6e-152
Ahg937089 jgi|Araly1|937089|scaffold_501280.1 265 1e-69
Ahg897230 jgi|Araly1|897230|Al_scaffold_0005_1196 73.1 7e-12
> Ahg944496 jgi|Araly1|944496|scaffold_700725.1
Length=1300
Score = 1149 bits (622), Expect = 0.0
Identities = 677/704 (96%), Gaps = 2/704 (0%)
Strand=Plus/Plus
Query 868 GCTTCTGTATGAAACATGTCTCTGCATCTGGCTTCTGTCCTATTATGAACCTGCAATAGA 927
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 599 GCTTCTGTATGAAATATGTCTCTGCGTCTGGCTTCTGTCCTATTATGAACCTGCAATAGA 658
Query 928 GTACTTGGCAACATCGAGGACAATGCAAAGGCTCACGGAAGTGGTTAAGCACTCGACTAA 987
|||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 659 GTACTTGGCAACGTCGAGGACAATGCAAAGGCTCACGGAAGTGGTCAAGAACTCGACTAA 718
Query 988 GGAAAAGGTTGTCAGGGTGGTCATATTGACATTCAGGAACCTTCTTCCAAAAGGTACATT 1047
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 719 GGAAAAGGTTGTCAGGGTGGTCATATTGACATTCAGGAACCTGCTTCCAAAAGGTACATT 778
Query 1048 TGGTGCCCAGATGGTTGATCTTGGACTCCCACATATTATCCACAGTCTAAAAACACAAGC 1107
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 779 TGGTGCCCAGATGGTTGATCTTGGACTCCCTCATATTATCCACAGTCTAAAAACACAAGC 838
Query 1108 ATGGAGTGACGAGGACTTGCTGGATGCACTGAACCAACTAGAAGAAGGGCTAAAAGACAA 1167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ATGGAGTGACGAGGACTTGCTGGATGCACTGAACCAACTAGAAGAAGGGCTAAAAGACAA 898
Query 1168 GATCAAGAAATTGAGTTCCTTTGATAAATATAAGCAAGAGGTGCTCCTTGGCCATCTTGA 1227
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 899 GATCAAGAAATTGAGTTCCTTTGACAAATATAAGCAAGAGGTGCTTCTTGGCCATCTTGA 958
Query 1228 CTGGAACCCAATGCACAAGGAGACCAATTTCTGGCGTGAGAATGTCACATGCTTTGAGGA 1287
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct 959 CTGGAACCCAATGCACAAAGAGGCCAATTTCTGGCGTGAGAATGTCACATGCTTTGAAGA 1018
Query 1288 GAACGACTTCCAGATACTCAGGGTCCTCCTCACAATCCTGGACACCTCAAGTGATCCCAG 1347
|||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 1019 GAACGACTTCCAGATACTAAGGGTCCTCCTCACAATCCTGGACACGTCAAGTGACCCCAG 1078
Query 1348 ATCATTGGCGGTGGCATGCTTTGATATCTCACAGTTCATACAATACCATGCAGCGGGGAG 1407
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 1079 ATCATTGGCGGTGGCATGCTTTGATATTTCACAGTTCATACAGTACCATGCAGCGGGAAG 1138
Query 1408 AGTGATTGTAGCAGACCTCAAGGCAAAAGAGCGAGTGATGAAGCTGATAAACCACGAGAA 1467
|||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1139 AGTGATCGTAGCAGACCTCAAGGCAAAAGAACGAGTGATGAAGCTGATGAACCACGAGAA 1198
Query 1468 CGCTGAGGTGACCAAGAACGCTATCTTGTGCATTCAGAGGCTTCTCCTGGGTGCCAAGTA 1527
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1199 CGCTGAGGTGACCAAGAACGCTCTCTTGTGCATTCAGAGGCTTCTCCTGGGAGCCAAGTA 1258
Query 1528 CGCTAGCTTCTTGCAAGCTTGATGGGACTCTTCCCTGTTTCTTT 1571
||||||||||||||||||||||||||||| | | |||||||||
Sbjct 1259 CGCTAGCTTCTTGCAAGCTTGATGGGACT-TGCA-TGTTTCTTT 1300
Score = 990 bits (536), Expect = 0.0
Identities = 558/569 (98%), Gaps = 0/569 (0%)
Strand=Plus/Plus
Query 220 ACTCATGGATCAGGCGGAGCTGAGTATAGAGCAGGTATTGAAAAGGGACATTCCATGGGA 279
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 20 ACTCATGGATCAGGCGGAGCTGAGTATAGAGCAGGTATTGAAGAGGGACATTCCATGGGA 79
Query 280 GACTTACATGAACACTAAGCTGGTTTCAGCTAAAGGTCTCCAGCTCTTAAGGCGCTATGA 339
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 80 GACTTACATGAACACTAAGCTGGTTTCAGCTAAAGGACTCCAGCTCTTAAGGCGCTACGA 139
Query 340 TAAAAAACCTGAAAGTGCTAGGGCACAGTTGCTCGATGAAGATGGTCCAGCTTATGTTCA 399
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 140 TAAAAAACCTGAAAGTGCAAGGGCACAGTTGCTCGATGAAGATGGTCCAGCTTATGTTCA 199
Query 400 TCTCTTTGTTAGCATCTTACGTGATATATTCAAGGAAGAAACTGTCGAATATGTTTTGGC 459
||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 200 TCTGTTTGTTAGCATCTTACGTGATATATTCAAGGAAGAAACTGTGGAATATGTCTTGGC 259
Query 460 TTTGATTTATGAAATGCTCTCAGCAAACCCAACACGAGCTCGATTATTCCATGATGAATC 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 TTTGATTTATGAAATGCTCTCAGCAAACCCAACACGAGCTCGATTATTCCATGATGAATC 319
Query 520 TTTGGCAAATGAGGATACTTATGAGCCTTTCTTGAGGTTGCTTTGGAAGGGAAATTGGTT 579
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 320 TTTGGCAAATGAGGATACTTATGAGCCTTTCTTGAGGTTGCTGTGGAAGGGAAATTGGTT 379
Query 580 CATTCAAGAAAAAAGCTGTAAGATCCTTGCCTGGATAATAAGTGCTAGGCCAAAAGCTGG 639
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 380 CATTCAAGAAAAAAGCTGCAAGATCCTTGCCTGGATAATAAGTGCTAGGCCAAAAGCTGG 439
Query 640 TAATGCTGTTATTGGTAATGGAATTGATGATGTTCTCAAGGGGTTGGTGGAATGGCTTTG 699
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 440 TAATGCTGTTATTGGTAATGAAATTGATGATGTTCTCAAGGGGTTGGTGGAATGGCTTTG 499
Query 700 TGCTCAGTTGAAGCAACCTTCTCATCCTACTCGTGGTGTTCCAATTGCAATCAGCTGCCT 759
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 500 TGCTCAGTTGAAGCAACCTTCTCATCCTACTCGTGGTGTTCCAATTGCAATCAGTTGCCT 559
Query 760 GTCGTCACTGCTTAAGGAACCTGTTGTCA 788
|||||||||||||||||||||||||||||
Sbjct 560 GTCGTCACTGCTTAAGGAACCTGTTGTCA 588
> Ahg897231 jgi|Araly1|897231|Al_scaffold_0005_1197
Length=393
Score = 538 bits (291), Expect = 6e-152
Identities = 363/397 (91%), Gaps = 7/397 (2%)
Strand=Plus/Plus
Query 224 ATGGATCAGGCGGAGCTGAGTATAGAGCAGGTATTGAAAAGGGACATTCCATGGGAGACT 283
|||||||| || || || | | ||||||||||||||||||| ||||| ||||||||||||
Sbjct 1 ATGGATCATGCAGAACTAACTTTAGAGCAGGTATTGAAAAGAGACATACCATGGGAGACT 60
Query 284 TACATGAAC-ACTAAGCTGGTTTCAGCTAA-AGGTCTCCAGC-TCTTAAGGCGCTATGAT 340
|||||| || ||||||||| ||||||| || |||||||| || | |||||||| || |||
Sbjct 61 TACATG-ACAACTAAGCTGATTTCAGC-AACAGGTCTCCCGCAT-TTAAGGCGGTACGAT 117
Query 341 AAAAAACCTGAAAGTGCTAGGGCACAGTTGCTCGATGAAGATGGTCCAGCTTATGTTCAT 400
|| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 118 AAGAAACCCGAAAGTGCAAGGGCACAGTTGCTGGATGAAGATGGTCCAGCTTATGTTCAT 177
Query 401 CTCTTTGTTAGCATCTTACGTGATATATTCAAGGAAGAAACTGTCGAATATGTTTTGGCT 460
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 178 CTGTTTGTTAGCATCTTACGTGATATATTCAAGGAAGAAACTGTGGAATATGTCTTGGCT 237
Query 461 TTGATTTATGAAATGCTCTCAGCAAACCCAACACGAGCTCGATTATTCCATGATGAATCT 520
|||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||
Sbjct 238 TTGATTTATGAAATGCTCTCAGAAAACCCAACACGAGCTCGTTTATTCCATGATAAATCT 297
Query 521 TTGGCAAATGAGGATACTTATGAGCCTTTCTTGAGGTTGCTTTGGAAGGGAAATTGGTTC 580
|||| | ||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 298 TTGGTACATGAGGATACTTACGAGCCTTTCTTGAGGTTGCTGTGGAAGGGAAATTGGTTC 357
Query 581 ATTCAAGAAAAAAGCTGTAAGATCCTTGCCTGGATAA 617
|||||||||||| |||| |||||||||||||||||||
Sbjct 358 ATTCAAGAAAAA-GCTGCAAGATCCTTGCCTGGATAA 393
> Ahg937089 jgi|Araly1|937089|scaffold_501280.1
Length=232
Score = 265 bits (143), Expect = 1e-69
Identities = 197/222 (89%), Gaps = 8/222 (4%)
Strand=Plus/Minus
Query 1356 CGGTGGCATGCTTTGATATCTCACAGTTCATACA--A-TACCATGCAGCGGGGAGAGTGA 1412
||||||||||||||||| | |||||||||||||| | ||||||||||| ||||||||||
Sbjct 232 CGGTGGCATGCTTTGATCTATCACAGTTCATACAGTAGTACCATGCAGCAGGGAGAGTGA 173
Query 1413 T-TGTAGCAGACCTCAAGGCAAAAGAGCGAGTGATGAAGCTGATAAACCACGAGAACGCT 1471
| | || ||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||
Sbjct 172 TCT-TAACAGACCTCAAGGCGAAAGAACGAGTGATGAAACTGATGAACCACGAGAACGCC 114
Query 1472 GAGGTGACCAAGAACGCTATCTTGTGCATTCAGAGGCTTCTC-CTGGGTGCCAAGTACGC 1530
||||| ||||||||||| |||||||||| |||||||||||| ||||||| ||||||||
Sbjct 113 GAGGTCACCAAGAACGCCCTCTTGTGCATCCAGAGGCTTCTCTTTGGGTGCGAAGTACGC 54
Query 1531 TAGCTTCTTGCAAGCTTGATGGGA-CTCTTCCCTGTTTCTTT 1571
|||||||||||||||||||||||| || || | |||||||||
Sbjct 53 TAGCTTCTTGCAAGCTTGATGGGAACT-TTGCATGTTTCTTT 13
> Ahg897230 jgi|Araly1|897230|Al_scaffold_0005_1196
Length=3591
Score = 73.1 bits (39), Expect = 7e-12
Identities = 39/39 (100%), Gaps = 0/39 (0%)
Strand=Plus/Minus
Query 1083 TTATCCACAGTCTAAAAACACAAGCATGGAGTGACGAGG 1121
|||||||||||||||||||||||||||||||||||||||
Sbjct 3591 TTATCCACAGTCTAAAAACACAAGCATGGAGTGACGAGG 3553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71381119130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5