BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G42180.1
Length=1471
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323060 jgi|Araly1|323060|fgenesh1_pm.C_scaffold_5000604 1964 0.0
Ahg326421 jgi|Araly1|326421|fgenesh1_pm.C_scaffold_6001641 110 4e-23
> Ahg323060 jgi|Araly1|323060|fgenesh1_pm.C_scaffold_5000604
Length=1269
Score = 1964 bits (1063), Expect = 0.0
Identities = 1208/1278 (95%), Gaps = 9/1278 (1%)
Strand=Plus/Plus
Query 168 ATGTCCTCTCTTCTTGTTCACACAAATGCATTACAATCCTCATCTTCTTCTTCTTCGTTA 227
|||||||||||||||| ||||||||||||||||||||||||| ||||| | ||||||
Sbjct 1 ATGTCCTCTCTTCTTGATCACACAAATGCATTACAATCCTCA---TCTTC--C-TCGTTA 54
Query 228 TACTCTCCTCCGATTACCGTAAAGAGAAGGAGCAATCTTGAGAAAAGAGAAGAAGAGTTG 287
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 55 TACTCTCCTCCGAATACCATAAAGAGAAGGAGCAATCTTGAGAAAAGAGAAGAAGAGTTG 114
Query 288 AGGAAAGCAAGGGCTGCAATTAGAAGAGCCGTCAGGTTTAAGAATTGCACGTCCAACGAA 347
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 115 AGGAAAGCAAGGGCTGAAATTAGAAGAGCCGTCAGGTTTAAGAATTACACGTCCAACGAA 174
Query 348 GAAGTTATTACTTATATCCCCACAGGCCAGATCTACAGAAACTCATTTGCCTTTCATCAG 407
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 GAAG---TTACTTATATCCCCACAGGCCAGATCTACAGAAACTCATTTGCCTTTCATCAA 231
Query 408 AGTCACATAGAAATGATGAAAACATTTAAGGTGTGGTCGTACAAAGAAGGAGAGCAGCCA 467
||||| |||||||||||||||| |||||| || |||||||||| ||||||||||||||||
Sbjct 232 AGTCATATAGAAATGATGAAAAGATTTAAAGTCTGGTCGTACAGAGAAGGAGAGCAGCCA 291
Query 468 CTGGTTCACGATGGACCGGTAAATGATATCTACGGAATCGAGGGACAGTTCATTGACGAG 527
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 292 CTGGTTCACGATGGACCGGTAAATGATATATACGGAATCGAGGGGCAGTTCATTGACGAG 351
Query 528 CTTAGTTACGTGATGGGCGGACCAAGTGGCCGGTTTAGAGCTAGCCGGCCAGAAGAAGCC 587
|||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 352 CTTAGTAACGTGATGGGCGGACCAAGTGGCCGGTTTAGGGCTAGCCGGCCGGAAGAAGCT 411
Query 588 CATGCCTTCTTCTTACCCTTCTCCGTTGCCAACATTGTTCACTACGTCTACCAACCCATT 647
||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 412 CATGCCTTCTTCTTACCGTTCTCCGTTGCCAATATTGTCCACTACGTCTACCAACCCATT 471
Query 648 ACCTCGCCAGCCGATTTCAACCGGGCCCGTCTCCACCGGATTTTTAACGATTATGTAGAC 707
|||||||| || ||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 472 ACCTCGCCGGCTGATTTCAACCGCGCCCGCCTCCACCGGATCTTTAACGATTATGTAGAC 531
Query 708 GTAGTGGCTCACAAGCACCCTTTTTGGAACCAAAGCAATGGTGCTGACCATTTCATGGTC 767
|| ||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 532 GTCGTGGCTCGCAAACACCCTTTTTGGAACCAAAGCAATGGCGCTGACCATTTCATGGTC 591
Query 768 TCTTGCCACGATTGGGCTCCCGATGTGCCAGATAGTAAACCAGAGTTTTTCAAGAACTTC 827
|||||||| |||||||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct 592 TCTTGCCATGATTGGGCTCCCGATGTGGCGGATAGTAAACCAGAGTTTTTCAAGGACTTC 651
Query 828 ATGAGAGGACTATGCAACGCCAACACATCGGAAGGTTTCAGACGAAACATCGATTTCTCT 887
||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||
Sbjct 652 ATGAGAGGACTATGCAACGCCAACACAACGGAAGGTTTCAGACCAAACATCGATATCTCT 711
Query 888 ATACCGGAGATTAACATTCCTAAAAGGAAGCTAAAGCCACCATTTATGGGACAAAACCCT 947
||||| ||||||||||||||||||||||||||||||||||| || ||||| |||| ||||
Sbjct 712 ATACCAGAGATTAACATTCCTAAAAGGAAGCTAAAGCCACCGTTCATGGGCCAAACCCCT 771
Query 948 GAGAACAGGACGATCTTGGCTTTCTTCGCAGGAAGAGCTCACGGATACATTAGGGAAGTT 1007
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 772 GAGAACAGGACGATCTTGGCTTTCTTTGCAGGAAGAGCTCACGGATACATAAGGGAAGTC 831
Query 1008 TTGTTCAGTCACTGGAAGGGTAAGGATAAAGACGTTCAAGTTTATGACCACCTCACAAAG 1067
||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 832 TTGTTCACTCACTGGAAGGGCAAGGATAAAGACGTTCAAGTGTATGACCACCTCACAAAG 891
Query 1068 GGACAAAACTATCATGAATTGATTGGTCATAGCAAGTTTTGTCTTTGTCCTAGTGGCTAC 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GGACAAAACTATCATGAATTGATTGGTCATAGCAAGTTTTGTCTTTGTCCTAGTGGCTAC 951
Query 1128 GAGGTGGCTAGTCCTAGAGAGGTCGAAGCCATCTACTCAGGCTGCGTCCCGGTTGTCATA 1187
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 GAGGTGGCTAGCCCTAGAGAGGTCGAAGCCATCTACTCAGGCTGCGTCCCGGTTGTCATA 1011
Query 1188 TCGGACAACTACTCGCTTCCGTTCAACGACGTGCTTGATTGGAGCAAGTTCTCGGTTGAG 1247
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1012 TCCGACAACTACTCACTTCCGTTCAACGACGTGCTTGATTGGAGCAAGTTCTCGGTAGAG 1071
Query 1248 ATCCCGGTCGACAAAATTCCTGATATTAAGAAGATTTTGCAAGAGATTCCACATGACAAA 1307
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1072 ATCCCGGTCGACAAAATCCCTGATATTAAGAAGATTTTGCAAGAGATTCCGCATGACAAG 1131
Query 1308 TATTTAAGGATGTATCGAAATGTTATGAAAGTTAGAAGGCATTTTGTGGTGAACCGTCCG 1367
||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1132 TATATAAGGATGTATCAAAATGTTATGAAAGTTAGAAGGCATTTTGTGGTGAACCGCCCG 1191
Query 1368 GCTCAACCATTTGATGTGATCCACATGATTCTTCACTCGGTTTGGTTAAGGAGGCTTAAC 1427
|||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 1192 GCTCAACCGTTTGATGTGATCCACATGATACTTCACTCCGTTTGGTTAAGGAGGCTAAAC 1251
Query 1428 ATTAGGTTGCCTTCTTGA 1445
||||||||||||||||||
Sbjct 1252 ATTAGGTTGCCTTCTTGA 1269
> Ahg326421 jgi|Araly1|326421|fgenesh1_pm.C_scaffold_6001641
Length=1965
Score = 110 bits (59), Expect = 4e-23
Identities = 153/198 (77%), Gaps = 8/198 (4%)
Strand=Plus/Plus
Query 711 GTGGCTCACAAGCACCCTTTTTGGAACCAAAGCAATGGTGCTGACCATTTCATGGTCTCT 770
||||||||||| | |||| |||||||| |||| ||| || ||||||||| | || |||
Sbjct 1228 GTGGCTCACAAATATCCTTATTGGAACCGAAGCCTTGGAGCCGACCATTTCTTTGTTTCT 1287
Query 771 TGCCACGATTGGGCTCCCGATGTGC-CA-GATAGTAAACCAGAGTTTTTCAAGAACTTCA 828
||||| |||||||| || || || | || ||| ||| || ||| | | || ||| | |
Sbjct 1288 TGCCATGATTGGGCACCAGACGT-CTCAGGAT-CTAACCCGGAGATGATGAAAAACCTGA 1345
Query 829 TGAGAGGACTATGCAACGCCAACACATCGGAAGGTTTCA-GACGAAAC-ATCGATTTCTC 886
| |||| || |||||||||||||||||||||||||||| | | ||| | ||| ||||
Sbjct 1346 TAAGAGTTCTCTGCAACGCCAACACATCGGAAGGTTTCATGCCCCAACGA--GATGTCTC 1403
Query 887 TATACCGGAGATTAACAT 904
|| |||||||| |||||
Sbjct 1404 AATCCCGGAGATCAACAT 1421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55040404025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5