BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G42190.1

Length=2088
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg948509 jgi|Araly1|948509|scaffold_800396.1                       99.0    1e-19


> Ahg948509 jgi|Araly1|948509|scaffold_800396.1
Length=197

 Score = 99.0 bits (53),  Expect = 1e-19
 Identities = 57/59 (97%), Gaps = 0/59 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTCATGCAAGGTTCTTGATGAAAGCGGCAATATCGACAATGACTTGCTTGGTAAA  59
            ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct  52   ATGGCTCATGCAAGGTTCTTGATGAAAGCGGCAATATCGACTATGACTCGCTTGGTAAA  110



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 78542085190


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5