BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G42316.1

Length=1526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg914834 jgi|Araly1|914834|Al_scaffold_0001_5088                    172    5e-42


> Ahg914834 jgi|Araly1|914834|Al_scaffold_0001_5088
Length=303

 Score =  172 bits (93),  Expect = 5e-42
 Identities = 128/144 (89%), Gaps = 5/144 (3%)
 Strand=Plus/Plus

Query  1264  ATGACTC-CAAAAAGGAATCAACAATGGA---CATCAATTATGATAAAAGCAAGAGGGAA  1319
             |||||||  ||||| | ||||||||||||   || ||||| |||||||| ||||||||||
Sbjct  1     ATGACTCAGAAAAAAG-ATCAACAATGGAGTGCAGCAATTGTGATAAAACCAAGAGGGAA  59

Query  1320  AGTATTACTCAGTTCAAATTCATATTTTACTACAATGCAACATGAAAGTGATGATCCAAT  1379
             | ||||||||| |||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct  60    ATTATTACTCAATTCAGATTCAGATTTTACTGCAATGCAACATGAAAGTGATGATCCAAT  119

Query  1380  TGTTCTTGTTGATTCTTTGCAAGT  1403
             ||||| ||||||||||||||||||
Sbjct  120   TGTTCCTGTTGATTCTTTGCAAGT  143



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 57135367500


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5