BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G42550.1
Length=1293
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891248 jgi|Araly1|891248|Al_scaffold_0007_3234 514 6e-145
Ahg947280 jgi|Araly1|947280|scaffold_703509.1 250 2e-65
> Ahg891248 jgi|Araly1|891248|Al_scaffold_0007_3234
Length=861
Score = 514 bits (278), Expect = 6e-145
Identities = 444/521 (85%), Gaps = 23/521 (4%)
Strand=Plus/Plus
Query 19 AGGTTGATCATCGCTGCCATCTTTGTCATGGTATGCGG---C---TACGAGGCGACGGTT 72
||||||||||||| |||||||||||| |||||||| || | ||||||| |||||||
Sbjct 28 AGGTTGATCATCGTTGCCATCTTTGTTATGGTATGGGGATACGAGTACGAGGGGACGGTT 87
Query 73 CTTCCGCTGAAGAGGATGATTCCGCCGAGCCATGAACTCGACCTCACTCAGCTTATGACA 132
| ||| |||||||||||||||||||||||||||||||||| || ||||||||| | ||
Sbjct 88 CGTCCATTGAAGAGGATGATTCCGCCGAGCCATGAACTCGATCTTACTCAGCTTGGGGCA 147
Query 133 TTTGATTCTGCTCGGCATGGAAGGTTGTTACAGTCTCCTGTACACGGATCTTTCAACTGG 192
|||||||||||||||||||||||| |||||||||||| ||| || ||| | |||| |
Sbjct 148 TTTGATTCTGCTCGGCATGGAAGGATGTTACAGTCTCATGTCCATGGAGCCTTCAGTTTT 207
Query 193 AAAGTTGAAAGAGACACTAGTATAC--TTCTCTCAGCGCTTTACTACACAACAGTACAAA 250
|||||||||| ||| | || | || || ||| | |||||||||| ||| ||||||
Sbjct 208 CCGGTTGAAAGAGGCAC-A-AATCCGATT-TC-CAG-GATTTACTACACGACATTACAAA 262
Query 251 TTGGGACACCTCCAAGAGAGTTGGATGTGGTAATTGACACGGGAAGTGATCTTGTATGGG 310
|||||||||| ||||||||||| |||||||||||||||| ||||||||| || ||||||
Sbjct 263 TTGGGACACCGCCAAGAGAGTTCAATGTGGTAATTGACACCGGAAGTGATGTTTTATGGG 322
Query 311 TTAGCTGCAATTCCTGCGTCGGCTGCCCGCTCCATAATGTTACTTTCTTCGATCCTGGAG 370
||||||||| ||| |||||||| ||||| || || |||||||||||||| ||||||||||
Sbjct 323 TTAGCTGCATTTCTTGCGTCGGTTGCCCTCTTCAGAATGTTACTTTCTTTGATCCTGGAG 382
Query 371 CCTCATCCTCAGCTGTAAAGCTGGCATGTTCTGACAAGAGGTGTTCCTCGGATCTACAGA 430
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 383 CCTCATCCTCAGCTGTAAAGCTGGCATGTTCTGACAAGAGGTGTTTCTCGGATCTACATA 442
Query 431 AGAAATCCCGTTGTTCGCTACTTGAAAGTTGTACCTACAAGGTGGAGTACGGTGATGGAA 490
||||||| ||||||| | |||||| || || | | |||||||||| |||||||||
Sbjct 443 AGAAATCTGGTTGTTCTCCACTTGA--GT---AC--A-A-GGTGGAGTACAGTGATGGAA 493
Query 491 GTGTAACCTCCGGCTACTACATATCAGATCTCATTTC-TTT 530
|| | ||||||||||||||||| |||||||||||||| |||
Sbjct 494 GTTTCACCTCCGGCTACTACATCTCAGATCTCATTTCCTTT 534
> Ahg947280 jgi|Araly1|947280|scaffold_703509.1
Length=552
Score = 250 bits (135), Expect = 2e-65
Identities = 194/222 (87%), Gaps = 6/222 (3%)
Strand=Plus/Plus
Query 218 TTC-TCTCAGCGCTTTACTACACAACAGTACAAATTGGGACACCTCCAAGAGAGTTGGAT 276
||| || ||| |||||||||||| ||| |||||||| ||| ||| ||||||||||| ||
Sbjct 297 TTCATCACAG-GCTTTACTACACGACATTACAAATTAGGAAACCGCCAAGAGAGTTCAAT 355
Query 277 GTGGTAATTGACACGGGAAGTGATCTTGTATGGGTTAGCTGCAATTCCTGCGTCGGCTGC 336
||||||||||||||||||||| || || ||||||||||||||| ||| |||||||| |||
Sbjct 356 GTGGTAATTGACACGGGAAGTAATGTTTTATGGGTTAGCTGCATTTCATGCGTCGGTTGC 415
Query 337 CCGCTCCATAATGTTACTTTCTTCGATCCTGGAGCCTCATCCTCAGCTGTAAAGCTGGCA 396
|| || || |||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 416 CCTCTTCAGAATGTTACTTTCTTCGATCCTGGAGCCTCATCAGCAGCTGTAAAGCTTGCA 475
Query 397 TGTTCTGACAAGAGGTG-TTCCTCGGATCTAC-AGAAGAAAT 436
|||||||||||||||| ||| ||||||||| | |||||||
Sbjct 476 TGTTCTGACAAGAGGTTCTTC-TCGGATCTATTA-AAGAAAT 515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48339858756
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5