BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G42550.1 Length=1293 Score E Sequences producing significant alignments: (Bits) Value Ahg891248 jgi|Araly1|891248|Al_scaffold_0007_3234 514 6e-145 Ahg947280 jgi|Araly1|947280|scaffold_703509.1 250 2e-65 > Ahg891248 jgi|Araly1|891248|Al_scaffold_0007_3234 Length=861 Score = 514 bits (278), Expect = 6e-145 Identities = 444/521 (85%), Gaps = 23/521 (4%) Strand=Plus/Plus Query 19 AGGTTGATCATCGCTGCCATCTTTGTCATGGTATGCGG---C---TACGAGGCGACGGTT 72 ||||||||||||| |||||||||||| |||||||| || | ||||||| ||||||| Sbjct 28 AGGTTGATCATCGTTGCCATCTTTGTTATGGTATGGGGATACGAGTACGAGGGGACGGTT 87 Query 73 CTTCCGCTGAAGAGGATGATTCCGCCGAGCCATGAACTCGACCTCACTCAGCTTATGACA 132 | ||| |||||||||||||||||||||||||||||||||| || ||||||||| | || Sbjct 88 CGTCCATTGAAGAGGATGATTCCGCCGAGCCATGAACTCGATCTTACTCAGCTTGGGGCA 147 Query 133 TTTGATTCTGCTCGGCATGGAAGGTTGTTACAGTCTCCTGTACACGGATCTTTCAACTGG 192 |||||||||||||||||||||||| |||||||||||| ||| || ||| | |||| | Sbjct 148 TTTGATTCTGCTCGGCATGGAAGGATGTTACAGTCTCATGTCCATGGAGCCTTCAGTTTT 207 Query 193 AAAGTTGAAAGAGACACTAGTATAC--TTCTCTCAGCGCTTTACTACACAACAGTACAAA 250 |||||||||| ||| | || | || || ||| | |||||||||| ||| |||||| Sbjct 208 CCGGTTGAAAGAGGCAC-A-AATCCGATT-TC-CAG-GATTTACTACACGACATTACAAA 262 Query 251 TTGGGACACCTCCAAGAGAGTTGGATGTGGTAATTGACACGGGAAGTGATCTTGTATGGG 310 |||||||||| ||||||||||| |||||||||||||||| ||||||||| || |||||| Sbjct 263 TTGGGACACCGCCAAGAGAGTTCAATGTGGTAATTGACACCGGAAGTGATGTTTTATGGG 322 Query 311 TTAGCTGCAATTCCTGCGTCGGCTGCCCGCTCCATAATGTTACTTTCTTCGATCCTGGAG 370 ||||||||| ||| |||||||| ||||| || || |||||||||||||| |||||||||| Sbjct 323 TTAGCTGCATTTCTTGCGTCGGTTGCCCTCTTCAGAATGTTACTTTCTTTGATCCTGGAG 382 Query 371 CCTCATCCTCAGCTGTAAAGCTGGCATGTTCTGACAAGAGGTGTTCCTCGGATCTACAGA 430 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 383 CCTCATCCTCAGCTGTAAAGCTGGCATGTTCTGACAAGAGGTGTTTCTCGGATCTACATA 442 Query 431 AGAAATCCCGTTGTTCGCTACTTGAAAGTTGTACCTACAAGGTGGAGTACGGTGATGGAA 490 ||||||| ||||||| | |||||| || || | | |||||||||| ||||||||| Sbjct 443 AGAAATCTGGTTGTTCTCCACTTGA--GT---AC--A-A-GGTGGAGTACAGTGATGGAA 493 Query 491 GTGTAACCTCCGGCTACTACATATCAGATCTCATTTC-TTT 530 || | ||||||||||||||||| |||||||||||||| ||| Sbjct 494 GTTTCACCTCCGGCTACTACATCTCAGATCTCATTTCCTTT 534 > Ahg947280 jgi|Araly1|947280|scaffold_703509.1 Length=552 Score = 250 bits (135), Expect = 2e-65 Identities = 194/222 (87%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 218 TTC-TCTCAGCGCTTTACTACACAACAGTACAAATTGGGACACCTCCAAGAGAGTTGGAT 276 ||| || ||| |||||||||||| ||| |||||||| ||| ||| ||||||||||| || Sbjct 297 TTCATCACAG-GCTTTACTACACGACATTACAAATTAGGAAACCGCCAAGAGAGTTCAAT 355 Query 277 GTGGTAATTGACACGGGAAGTGATCTTGTATGGGTTAGCTGCAATTCCTGCGTCGGCTGC 336 ||||||||||||||||||||| || || ||||||||||||||| ||| |||||||| ||| Sbjct 356 GTGGTAATTGACACGGGAAGTAATGTTTTATGGGTTAGCTGCATTTCATGCGTCGGTTGC 415 Query 337 CCGCTCCATAATGTTACTTTCTTCGATCCTGGAGCCTCATCCTCAGCTGTAAAGCTGGCA 396 || || || |||||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 416 CCTCTTCAGAATGTTACTTTCTTCGATCCTGGAGCCTCATCAGCAGCTGTAAAGCTTGCA 475 Query 397 TGTTCTGACAAGAGGTG-TTCCTCGGATCTAC-AGAAGAAAT 436 |||||||||||||||| ||| ||||||||| | ||||||| Sbjct 476 TGTTCTGACAAGAGGTTCTTC-TCGGATCTATTA-AAGAAAT 515 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48339858756 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5