BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G42630.1
Length=1534
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484762 jgi|Araly1|484762|fgenesh2_kg.5__754__AT3G42630.1 1847 0.0
> Ahg484762 jgi|Araly1|484762|fgenesh2_kg.5__754__AT3G42630.1
Length=1313
Score = 1847 bits (1000), Expect = 0.0
Identities = 1158/1236 (94%), Gaps = 4/1236 (0%)
Strand=Plus/Plus
Query 79 TCTATCTTTGAAACCCCAACATCTCAAGCTCTTATCTTGTTACACGGATTCGTCTGCTCC 138
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 27 TCTATCTTTGGAACCCCAACAACTCAAGCTCTTATCTTGTTACACGGATTCGTCTGCTCC 86
Query 139 TTCAATCGCGAAAAAGTTGATCAAGGAATCAAAGCTATCTAGGGACTTCAGTCAAAAGAT 198
||||||||| ||||||||||||||||||||||||||| || || ||||||| ||||||
Sbjct 87 TTCAATCGCTCGAAAGTTGATCAAGGAATCAAAGCTATCAAGAGATTTCAGTCGAAAGAT 146
Query 199 ACAAATCGTAGACTACGCTCCATTAGTTCAAACTTTAAGCCAGAGAAGATTACCTGATGT 258
|||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 147 ACAAATTGTAGACTATGCTCCATTAGTCCAAACTTTAAGCCAGAGAAGATTGCCTGATGT 206
Query 259 AGCTCATGAGATTTTTCTCCAAACGAAATCAGTTAACTTGTTACCAAATTACAGAACCCT 318
||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 207 TGCTCATGAGATTTTTATCCAAACGAAATCAGTTAACTTGTTGCCAAATTATAGAACCCT 266
Query 319 TTGTGCTCTTATGCTTTGTTTTGCTGAAAATGGGTTTGTTCTTCGAGCACGTACGATTTG 378
||| ||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 267 TTGCGCTCTTACGCTTTGCTTTGCTGAAAATGGGTTTGTTCTTCGAGCACGTATGATTTG 326
Query 379 GGATGAGATTATAAACAGTTGTTTTGTACCTGATGTCTTTGTAGTCTCTAAGCTTATATC 438
||||| |||| ||||||||| ||| || || ||||||||||| |||||||||||||||||
Sbjct 327 GGATGGGATTTTAAACAGTTCTTTCGTGCCCGATGTCTTTGTCGTCTCTAAGCTTATATC 386
Query 439 TGCTTATGAGCAATTTGGTTGTTTTGATGAAGTTGCCAAGATCACCAAGGATGTTGCTGC 498
|||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 387 TGCTTACGAGCAGGTTGGTTTTTTTGATGAAGTTGCCAAGATCACCAAGGATGTTGCTGC 446
Query 499 AAGGCACTCGAAGCTTCTTCCGGTTGTGTCTTCACTTGCTATATCCTGTTTTGGTAAGAA 558
|||||| |||||||| ||||||||||||| |||| |||||||||| ||||||||||||||
Sbjct 447 AAGGCATTCGAAGCTGCTTCCGGTTGTGTATTCAGTTGCTATATCGTGTTTTGGTAAGAA 506
Query 559 TGGACAGTTGGAACTGATGGAGGGTGTTATAGAGGAAATGGATTCAAAGGGAGTGTTGTT 618
||| ||||||||| ||||||||||||||||||||||||||||||| |||||| ||| |||
Sbjct 507 TGGTCAGTTGGAATTGATGGAGGGTGTTATAGAGGAAATGGATTCGAAGGGAATGTCGTT 566
Query 619 AGAGGCTGAGACTGCTAATGTGATTGTTAGATACTATAGTTTTTTCGGTAGTTTAGATAA 678
||| ||| |||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 567 AGATTCTGCTACTGCTAATGCGATTGTTAGATACTTTAGTTTTTTCGGTACTTTAGATAA 626
Query 679 GATGGAGAAGGCTTATGGCCGGGTTAAGAAGTTTGGTA-TTGTGATAGAGGAAGAAGAGA 737
||| ||| |||||||||||||| ||||||||||||| | |||||||||||||||||||||
Sbjct 627 GATAGAGCAGGCTTATGGCCGGCTTAAGAAGTTTGG-ATTTGTGATAGAGGAAGAAGAGA 685
Query 738 TAAGAGCTGTGGTGTTAGCGTACTTGAAACAACGGAAGTTTTATCGGTTACGCGAGTTTT 797
||||||||||| ||||||| ||||| ||||||||||||||||||||| |||| |||||||
Sbjct 686 TAAGAGCTGTGTTGTTAGCATACTTAAAACAACGGAAGTTTTATCGGCTACGTGAGTTTT 745
Query 798 TGTCAGATGTTGGTCTCGGTAGAAGAAATCTTGGAAATATGTTATGGAATTCTGTATTAC 857
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 746 TGTCAGATGTTGGTCTCGGTAGAAGAAATCTTGGGAATATGTTATGGAATTCTGTATTAC 805
Query 858 TGTCATATGCAGCTGATTTTAAGATGAAAAGCTTGCAGAGAGAGTTTATTGGAATGCTTG 917
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 TGTCATATGCAGCTGACTTTAAGATGAAAAGCTTGCAGAGAGAGTTTATTGGAATGCTTG 865
Query 918 ATGCGGGTTTCTCTCCTGACCTTACCACCTTTAACATTCGCGCTCTTGCGTTTTCTAGAA 977
|||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||
Sbjct 866 ATGCGGGTTTCTCTCCTGACCTTACCACCTTTAATATCCGCGCCCTCGCGTTTTCTAGAA 925
Query 978 TGGCTCTCTTCTGGGATCTACATCTCACTCTTGAACATATGAGACGTTTGAACATTGTTC 1037
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 TGGCTCTTTTCTGGGATATACATCTCACTCTTGAACATATGAGACGTTTGAACATTGTTC 985
Query 1038 CGGATCTTGTGACTTTCGGATGTGTTGTCGATGCATATATGGATAAGCGACTAGCGAGAA 1097
| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 986 CAGATCTTGTGACTTTCGGATGTGTGGTCGATGCATACATGGATAAGCGACTAGCAAGAA 1045
Query 1098 ATTTGGAGTTTGTATACAACCGAATGAATCT-GGACGATTCTCCTCTTGTCTTAACTGAT 1156
||||||||||||||||||||| |||||| || ||||||||||||| ||||||||||||||
Sbjct 1046 ATTTGGAGTTTGTATACAACCAAATGAA-CTTGGACGATTCTCCTGTTGTCTTAACTGAT 1104
Query 1157 CCACTTGCATTTGAAGTTCTGGGGAAAGGGGATTTCCATCTTAGCTCGGAAGCTGTTTTG 1216
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1105 CCACTTGCATTTGAAGTACTGGGGAAAGGGGATTTCCATCTTAGCTCAGAAGCTGTTTTG 1164
Query 1217 GAGTTCAGTCCACGGAAAAACTGGACGTATAGAAAGCTAATTGGAGTTTATCTCAAGAAA 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1165 GAGTTCAGTCCACGGAAAAACTGGACGTATAGAAAGCTAATTGGAGTTTATCTGAAGAAA 1224
Query 1277 AAGTTGCGGAGAGACCAGATTTTCTGGAATTACTAG 1312
||||||||||||||||||||||||||||||||||||
Sbjct 1225 AAGTTGCGGAGAGACCAGATTTTCTGGAATTACTAG 1260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57440089460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5