BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G42670.1
Length=3879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484766 jgi|Araly1|484766|fgenesh2_kg.5__758__AT3G42670.1 6095 0.0
Ahg351139 jgi|Araly1|351139|fgenesh1_pg.C_scaffold_6001732 1995 0.0
> Ahg484766 jgi|Araly1|484766|fgenesh2_kg.5__758__AT3G42670.1
Length=3873
Score = 6095 bits (3300), Expect = 0.0
Identities = 3692/3884 (95%), Gaps = 16/3884 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAGAAAGCATTACTTTGAGTTTAACCATCCATTTAATCCATGTCCTTTCGAGGTG 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGAGAAAGCATTACTTTGAGTTTAATCATCCATTTAATCCATGTCCTTTCGAGGTG 60
Query 61 TTCTGCTGGGGGACATGGAAGGCCGTGGAGTACTTAAGGATCGAGAATGGAACGATGACA 120
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 TTCTGCTGGGGGACATGGAAGGCCGTGGAGTACTTAAGAATCGAGAATGGAACGATGACG 120
Query 121 ATGCGTCTCTTAGAAAATGGACAAGTTTTGGATGATATAAAACCATTTCAGAGGCTTCGA 180
||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 121 ATGCGTCTCTTGGAAAATGGACAAGTATTGGATGATATAAGACCATTTCAGAGGCTTCGT 180
Query 181 ATTAGATCAAGAAAGGCGACTTTGATCGACTGTACTTCTTTTTTAAGACCCGGTATCGAT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTAGATCAAGAAAGGCGACTTTGATCGACTGTACTTCTTTTTTAAGACCCGGTATCGAT 240
Query 241 GTTTGCGTTCTTTATCAGAGAGATGAAGAGACTCCAGAACCAGTTTGGGTGGATGCAAGG 300
||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 GTTTGCGTTCTCTATCAGAAAGATGAAGAGACTCCAGAACCGGTTTGGGTGGATGCAAGG 300
Query 301 GTTTTATCTATAGAGAGGAAGCCTCATGAATCTGAATGCTTGTGTACGTTCCATGTCAGT 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 ATATTATCTATAGAGAGGAAGCCTCATGAATCTGAATGCTTGTGTACGTTCCATGTCATT 360
Query 361 GTTTATATAGACCAAGGCTGCATTGGTTTGGAGAAGCATAGAATGAATAAAGTTCCGGTA 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTTATATAGACCAAGGCTGCATCGGTTTGGAGAAGCATAGAATGAATAAAGTTCCGGTA 420
Query 421 CTCGTGGGACTCAACGAAATCGCCATCCTTCAAAAGTTTTGCAAGGAACAAAGCTTGGAC 480
||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||
Sbjct 421 CTCGTGGGACTCAACCAAATCGCCATTCTCCAAAAGTTTTGCAAGGAACAAAGCTTGGAC 480
Query 481 CGTTACTATAGATGGAGATACTCTGAGGACTGTTCTTCGTTGGTGAAAACAAGACTAAAC 540
|| ||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 481 CGCTACTACAGATGGAGATACTCTGAGGACTGCTCTTCGCTGGTGAAAACAAGACTAAAC 540
Query 541 TTAGGGAAGTTCTTGCCTGATCTTACATGGTTGCTTGTTACATCAGTTTTGAAAAACATT 600
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTGGGGAAGTTCTTGCCTGATCTTACATGGTTGCTTGTTACATCAGTTTTGAAAAACATT 600
Query 601 GTGTTTCAGATTAGAACCGTTCACGAGAAGATGGTTTATCAGATTGTGACGGATGAAGAT 660
||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 GTGTTTCAGATCAGAACAGTTCACGAGAAGATGGTTTATCAGATTGTGACTGATGAAGAT 660
Query 661 TGCGAAGGCTCTAGTAGCTCTTTGAGTGCAATGAACATTACGGTTGAAGACGGTGTTGTC 720
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||
Sbjct 661 TGCGAAGGCTCTAGTAGCTCTTTGAGTGCAATGAACATCACGGTCGAAGACGGTGTTTTC 720
Query 721 ATGTCTAAGGTTGTTTTGTTCAATCCAGCTGAGGATACTTGTCAAGATAGTGATGTAAAG 780
||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 721 ATGTCTAAGGTGGTTTTGTTCAATCCAGCTGAGGATACTTATGAAGATAGTGATGTAAAG 780
Query 781 GAGGAGATTGAAGAGGAGGTAATGGAGCTGCGTCGGTCCAAGAGAAGAAGCGGGCGGCCT 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 781 GAGGAGATTGAAGAGGAGGTAATGGAGCTGCGTCGGTCCAAGAGAAGAAGCGGGCGACCT 840
Query 841 GAGAGATACGGAGACTCTGAGATTCAGCCGGATTCGAAGGATGGATGGGTAAGGATGATG 900
||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 841 GAGAGATACGGGGACTCTGAGATTCAGCCAGATTCAAAGGATGGATGGGTAAGGATGATG 900
Query 901 CCATATAGGTACAACATATGGAATGTTTCAAGtgatgatgatgatgaagaagaagattgc 960
||||||||||||| | ||||| ||||||||||||||| ||||| |||| | || ||||
Sbjct 901 CCATATAGGTACAGTACATGGACTGTTTCAAGTGATGACGATGACGAAG-A-AA-ATTGT 957
Query 961 gaggatgataaagatactgatgatgatTTATACTTACCGTTATCGCATTTACTTAGAAAG 1020
|| ||||||| |||||| ||||| |||||||||||||||||||||||||||||| | |||
Sbjct 958 GATGATGATAGAGATACCGATGACGATTTATACTTACCGTTATCGCATTTACTT-GGAAG 1016
Query 1021 -AAAGGAAGCAAAAAGGGATTTAGTAAGGATAAGCAGAGAGAGATAGTTTTGGTAGACAA 1079
|||||||||| ||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 1017 AAAAGGAAGCACAAAGGGATTAAGTAAGGATAAGCAAAGAGAGATTGTTTTGGTAGACAA 1076
Query 1080 AACTGAGAGGAAGAAGAGAAAGAAAACAGAGGGATTTAGTCGAAGTTGTGAGCTTTCGGT 1139
|||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1077 AACTGAAAGGAAGAAGAGAAAGAAAACAGAGGGATTTGGTCGAAATTGTGAGCTTTCGGT 1136
Query 1140 TATTCCTTTCACTCCTGTCTTTGAACCTATACCGTTGGAACAGTTTGGTCTCAATGCAAA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TATTCCTTTCACTCCTGTCTTTGAACCTATACCGTTGGAACAGTTTGGTCTCAATGCAAA 1196
Query 1200 TAGTTTGTGTGGTGGTGTCTCTGGAA---ATTTGATGGATGAGATCGATAAGTATCGTAG 1256
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1197 TAGTTTGTGTGGTGGTTTCTCTGGAAGTCATTTGATGGATGAGATCGATAAGTATCGTAG 1256
Query 1257 TAAAGCAGCGAAATACGGgaagaagaagaagaagaagaTT-GAAATGGAAGAGATGGAAT 1315
|||||||||||||||| | | ||||||||||||| || |||||||||||||||||||
Sbjct 1257 TAAAGCAGCGAAATAC--G--G--GAAGAAGAAGAAG-TTAGAAATGGAAGAGATGGAAT 1309
Query 1316 CTGATCTAGGTTGGAATGGACCTATTGGGAATGTGGTTCATAAAAGAAATGGACCGCATT 1375
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1310 CTGATCTAGGTTGGAATGGACCCATTGGCAATGTGGTTCATAAAAGAAATGGACCGCATT 1369
Query 1376 CTCGAATAAGGTCCGTTTCTAGGGAAACCGGAGTTTCTGAGGAACCGCAGATTTATAAGA 1435
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 CCCGAATAAGGTCCGTTTCTAGGGAAACCGGAGTTTCTGAGGAACCGCAGATTTATAAGA 1429
Query 1436 AGAGAACGTTGAGCGCAGGTGCGTATAACAAGTTGATAGACTCGTACATGAGTAGAATTG 1495
||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||
Sbjct 1430 AGAGAACGTTGAGCGCAGGCGCGTATAACAAGCTGATCGACTCGTACATGAGTAGAATTG 1489
Query 1496 ATTCTACAATTGCAGCCAAGGACAAAGCAACCAATGTTGTTGAGCAGTGGCAAGGGTTAA 1555
||||||||||||||||||| || |||||||||||||||||||||||||| | ||| |||
Sbjct 1490 ATTCTACAATTGCAGCCAAAGATGAAGCAACCAATGTTGTTGAGCAGTGGGAGGGGATAA 1549
Query 1556 AGAACCCCGCAAGCTTTTCGATCGAAGCCGAAGAAAGGTTGAGTGAGGAGGAGGAGGATG 1615
||||| | |||| |||||| || ||||||||||||||||||||||| ||||| || ||||
Sbjct 1550 AGAACACTGCAACCTTTTCTATAGAAGCCGAAGAAAGGTTGAGTGACGAGGATGACGATG 1609
Query 1616 ATGGCGAGACTTCAGAGAATGAGATTCTATGGAGGGAAATGGAACTATGCTTGGCTTCTT 1675
| || ||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1610 ACGGAGAGACGTCAGAGAACGAGATGCTATGGAGGGAAATGGAACTATGTTTGGCTTCTT 1669
Query 1676 CTTACATTCTTGATGACCATGAGGTGAGAGTGGATAACGAGGCGTTCCATAAAGCAACCT 1735
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 CTTACATTCTTGATGACAATGAGGTGAGAGTGGATAACGAGGCGTTCCATAAAGCAACCG 1729
Query 1736 GTGATTGTGAACATGACTATGAATTGAATGAAGAAATCGGAATGTGTTGCAGATTGTGTG 1795
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1730 GTGATTGTGAACATGATTATGAATTGAATGAAGAAATCGGAATGTGTTGCAGATTGTGTA 1789
Query 1796 GTCATGTAGGAACTGAGATAAAACATGTTTCTGCACCTTTTGCGCGGCACAAGAAATGGA 1855
||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1790 GTCATGTAGGATCTGAGATAAAACATGTCTCTGCACCTTTTGCGCAGCACAAGAAATGGA 1849
Query 1856 CGACGGAGACTAAGCAAATCAACGAAGATGACATTAATACTACTATAGTTAACCAAGATG 1915
| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1850 CCACGGAGACTAAGCAAATCAACGAAGATGACATTAATACTACTAAAGTGAACCAAGATG 1909
Query 1916 GAGTTGAGAGCCATACTTTCACTATACCAGTTGCTTCCTCAGATATGCCATCGGCTGAAG 1975
||||||||| |||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 1910 GAGTTGAGAACCATACTTTCACTATACCAGTTGCTTCCTCCGATATGCCCTCTGCTGAAG 1969
Query 1976 AAAGTGACAATGTCTGGTCTTTAATACCTCAGCTTAAGAGAAAACTGCATTTGCACCAGA 2035
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1970 AAAGTGACAATGTTTGGTCTCTAATACCTCAGCTTAAGAGAAAACTGCATTTGCACCAGA 2029
Query 2036 AAAAAGCTTTTGAGTTTCTCTGGAAGAACCTAGCCGGGTCAGTGGTTCCCGCGATGATGG 2095
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 2030 AAAAAGCTTTTGAGTTTCTCTGGAAGAACTTAGCCGGGTCAGTGATTCCCGCGATGATGG 2089
Query 2096 ATCCGAGTTCAGATAAGATAGGTGGGTGTGTAGTTTCTCATACTCCCGGAGCAGGAAAAA 2155
||||||||||||| |||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 2090 ATCCGAGTTCAGAGAAGATAGGTGGGTGCGTGGTTTCTCATACTCCCGGAGCAGGCAAAA 2149
Query 2156 CATTTCTAATCATAGCTTTTCTCGCGAGCTACTTGAAGATATTTCCGGGTAAAAGACCTT 2215
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 2150 CATTTCTGATCATAGCTTTTCTCGCGAGCTACTTGAAGATATTTCCGGGTAAAAGGCCAT 2209
Query 2216 TGGTTCTTGCTCCAAAAACAACTTTGTACACTTGGTACAAGGAGTTCATCAAATGGGAGA 2275
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 2210 TGGTTCTTGCTCCAAAAACAACGTTGTACACATGGTATAAGGAGTTCATCAAATGGGAGA 2269
Query 2276 TTCCGGTCCCTGTTCACTTGCTCCATGGTCGTAGAACCTACTGTATGTCCAAAGAGAAGA 2335
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 2270 TTCCGGTCCCTGTTCACTTGCTCCATGGTCGTAGAACCTACTGTGTGTCCAAAGAGAACA 2329
Query 2336 CCATTCAGTTCGAGGGAATTCCAAAACCAAGCCAAGATGTTATGCATGTTCTTGACTGTT 2395
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2330 CCATTCAGTTCAAGGGAATTCCAAAACCGAGCCAAGATGTTATGCATGTTCTTGACTGTT 2389
Query 2396 TAGACAAAATCCAGAAATGGCATGCACAGCCGAGTGTTCTTGTAATGGGTTACACATCGT 2455
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2390 TAGACAAAATCCAGAAATGGCATGCACAGCCGAGTGTTCTTGTGATGGGTTACACATCGT 2449
Query 2456 TTCTAACTTTGATGAGGGAAGATTCAAAGTTTGCTCATAGAAAGTACATGGCTAAAGTAC 2515
| ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 2450 TCCTAACATTGATGAGGGAAGATTCAAAGTTTGCTCATAGAAAATACATGGCCAAAGTAC 2509
Query 2516 TGAGAGAGTCTCCTGGATTACTGGTTCTAGACGAGGGACATAACCCGAGGAGTACCAAGT 2575
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
Sbjct 2510 TGAGAGAGTCTCCTGGATTACTAGTTTTAGACGAGGGACATAACCCGAGGAGTACCAAAT 2569
Query 2576 CGAGATTACGAAAGGCCTTGATGAAAGTTGATACTGACTTGAGGATTCTGCTTTCTGGTA 2635
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 2570 CGAGATTACGAAAGGCCTTGATGAAAGTTGATACTGATTTGAGGATTCTGCTTTCGGGTA 2629
Query 2636 CATTGTTTCAGAACAACTTCTGTGAGTACTTCAACACTTTGTGCTTGGCTAGACCCAAGT 2695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2630 CATTGTTTCAGAACAACTTCTGTGAGTACTTCAACACTTTGTGCTTGGCTAGACCCAAGT 2689
Query 2696 TTGTTCATGAGGTTCTAGTGGAGTTGGACAAGAAGTTCCAGACCAACCAAGCCGAGCAAA 2755
|||||||||||||||| |||||||||||| |||||||||||||||||||||| | | |||
Sbjct 2690 TTGTTCATGAGGTTCTTGTGGAGTTGGACCAGAAGTTCCAGACCAACCAAGCTGTGGAAA 2749
Query 2756 AGGCGCCTCACTTGCTTGAAAATAGAGCTCGGAAGTTCTTCCTTGACATTATAGCCAAGA 2815
|||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 2750 AGGCGCCTCACTTGCTTGAAAATAGAGCTCGGAAATTCTTCCTCGACATTATTGCCAAGA 2809
Query 2816 AGATTGACACAAAAGTGGGCGATGAGCGCTTGCAGGGTCTCAACATGTTGAGGAATATGA 2875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2810 AGATTGACACAAAAGTGGGCGATGAGCGCTTGCAGGGTCTCAACATGTTGAGGAATATGA 2869
Query 2876 CGAGTGGTTTCATCGATAACTATGAAGGGAGTGGAAGCGGAAGTGGTGATGTTCTCCCAG 2935
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2870 CCAGTGGTTTCATCGATAACTATGAAGGGAGCGGAAGCGGAAGTGGTGATGTTCTCCCAG 2929
Query 2936 GTTTGCAGATTTACACATTGTTGATGAATTCCACTGATGTACAGCACAAGAGTCTTACCA 2995
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2930 GTTTGCAGATTTACACATTGTTGATGAATTCAACTGATGTACAGCACAAGAGTCTTACCA 2989
Query 2996 AACTTCAGAACATAATGTCAACTTACCATGGATATCCACTCGAGCTCGAGTTACTCATAA 3055
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 2990 AACTTCAGAATATAATGTCGACTTACCATGGATATCCACTCGAGCTTGAGTTACTCATAA 3049
Query 3056 CGTTAGCTGCTATCCATCCTTGGTTGGTCAAAACCACAACCTGTTGCGCCAAATTCTTCA 3115
||||||| ||||||||||||||||||||||||||||| || |||||| ||||||||||||
Sbjct 3050 CGTTAGCAGCTATCCATCCTTGGTTGGTCAAAACCACTACATGTTGCACCAAATTCTTCA 3109
Query 3116 ACCCTCAGGAGCTTTTAGAGATTGAGAAGCTCAAGCACGATGCAAAGAAAGGATCAAAAG 3175
| ||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3110 ATCCTGAGGAGCTTTTCGAGATTGAGAAGCTCAAGCATGATGCAAAGAAAGGATCAAAAG 3169
Query 3176 TCATGTTTGTGCTTAATCTTGTGTTCCGGGTGGTCAAGAGGGAGAAAATCCTCATATTTT 3235
|||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 3170 TCATGTTTGTGCTTAACCTAGTGTTCCGGGTGGTCAAGAGGGAGAAAATCCTCATCTTTT 3229
Query 3236 GTCACAACATTGCGCCGATCCGCCTGTTTCTTGAGCTGTTCGAGAATGTATTCAGGTGGA 3295
| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 3230 GCCACAACATTGCGCCGATCCGCCTGTTTCTTGAGCTGTTTGAGAATGTTTTCAGGTGGC 3289
Query 3296 AGAGAGGCCGAGAGCTCCTGACCTTGACAGGGGATCTCGAGCTGTTTGAAAGAGGCAGAG 3355
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3290 AGAGAGGCCGAGAGCTCCTGACCTTGACAGGGGATCTCGAGCTGTTTGAGAGAGGCAGAG 3349
Query 3356 TAATAGACAAATTTGAAGAGCCAGGAGGCCAGTCCCGTGTTCTGCTGGCTTCGATTACAG 3415
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 3350 TGATAGACAAATTTGAAGAACCAGGAGGCCAGTCCCGTGTTCTGCTGGCTTCGATCACAG 3409
Query 3416 CCTGTGCAGAAGGCATCAGTCTAACCGCTGCTTCACGGGTGATCATGCTTGATTCAGAGT 3475
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 3410 CCTGTGCAGAAGGCATCAGTCTAACCGCTGCTTCCCGGGTGATCATGCTTGATTCGGAGT 3469
Query 3476 GGAATCCTTCTAAGACAAAGCAAGCAATCGCACGTGCATTCAGACCGGGACAGCAGAAAG 3535
|||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 3470 GGAATCCTTCTAAGACTAAGCAAGCAATCGCACGTGCGTTCAGACCAGGACAGCAGAAAG 3529
Query 3536 TGGTGTACGTTTACCAGCTCTTGTCGAGAGGAACACTTGAAGAAGACAAATACAGGAGGA 3595
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 3530 TGGTGTACGTTTACCAGCTCTTGTCCAGAGGAACACTTGAGGAAGACAAATACAGGAGGA 3589
Query 3596 CGACCTGGAAAGAATGGGTCTCCAGTATGATTTTCAGTGAAGAATTTGTGGAGGACCCAT 3655
||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 3590 CGACCTGGAAAGAGTGGGTGTCAAGTATGATTTTCAGCGAAGAATTTGTGGAGGACCCAT 3649
Query 3656 CTCAATGGCAAGCTGAGAAGATTGAGGACGATGTTCTTAGAGAAATCGTGGAGGAAGACA 3715
| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3650 CACAGTGGCAAGCTGAGAAGATCGAGGACGATGTTCTTAGAGAAATCGTGGAGGAAGACA 3709
Query 3716 AAGTCAAATCCTTCCATATGATCATGAAGAACGAGAAAGCTTCAACAGGTGGCTGATTGC 3775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3710 AAGTCAAATCCTTCCATATGATCATGAAGAACGAGAAAGCTTCAACAGGTGGCTGATTGC 3769
Query 3776 TGAATTTTTCCAGTTCAAGTTTCTGTTTCACCATGCCTTTGATGATGATTCTTTAACAGC 3835
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3770 TGAAGTTTTACAGTTCAAGTTTCTGTTTCACCATGCCTTTGATGATGATTCTTTAACAGC 3829
Query 3836 TTGTTGTATTGTAATATAAACTAATCCTGTATCATAAGTTTGTG 3879
||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 3830 TTGTTGTATTGTAATATAAACTAATCCGGTATCACAAGTTTGTG 3873
> Ahg351139 jgi|Araly1|351139|fgenesh1_pg.C_scaffold_6001732
Length=3783
Score = 1995 bits (1080), Expect = 0.0
Identities = 2192/2711 (81%), Gaps = 147/2711 (5%)
Strand=Plus/Plus
Query 1129 GAGCTTTCGGTTATTCCTTTCACTCCTGTCTTTGAACCTATACCGTTGGAACAGTTTGGT 1188
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 1141 GAGCTTTCGGTTATTCCTTTCACTCCAGTATTTGAGCCTATACCGTTGGAACAGTTTGGT 1200
Query 1189 CTCAATGC-AAATAGTTT--GT-GTGGT-G--GTGTCTCTGGAA---ATTTGATGGATGA 1238
|| ||||| || | |||| || | ||| | || | || ||| | | | |||||
Sbjct 1201 CTTAATGCTAACT-GTTTGGGTGGGGGTGGCAGTTTTTCAAGAAGCCAGTACTTTGATGA 1259
Query 1239 GATCGATAAGTATCGTAGTAAAGCAGCGAAATACGGgaagaagaagaaga-agaagaTTG 1297
||| || |||||||| |||||| | |||||||||||||| | || | || |||| | ||
Sbjct 1260 GATTGAAAAGTATCGAAGTAAATCCTCGAAATACGGGAAG-A-AA-ATGACAGAA-A-TG 1314
Query 1298 AAATGGAAGA-GATGGAATCTGATCTAGGTTGGAATGGACCT-A-T-TGGGAATGT-GGT 1352
|| | ||| |||||||||||||||| ||||||| || ||| | | | ||| || |||
Sbjct 1315 GAA--G-AGATGATGGAATCTGATCTATGTTGGAAAGGTCCTAACTACGTGAA-GTCGGT 1370
Query 1353 TCATAAAA-GAAATGGACCGC-ATTC-TCGAATAAGGTCCGTTT-CTAGGGAAACCGGA- 1407
||| |||| | || ||| | | | ||| ||| | ||| || ||| | ||
Sbjct 1371 TCA-AAAACG-AA--CACCCCGA-CCTTCG----CGGT-CATTTGCT-CCAAAAACAGAG 1419
Query 1408 GTTTCTGAGGAACCGCAGATTTATAAGAAGAG-AACGTTGAGCGCAGGTGCGTATAACAA 1466
| ||| || ||||| | | | |||||||| || ||| ||||| |||||||| ||||||||
Sbjct 1420 GATTCCGATGAACCACGGGTCTATAAGAA-AGTAACATTGAGTGCAGGTGCATATAACAA 1478
Query 1467 GTTGATAGACTCGTACATGAGTAGA-ATTGATTCTACAATTGCAGCCAAGGACAAAG-CA 1524
| ||||||| || ||||||| | | ||||| || |||||| ||||||||||| || |
Sbjct 1479 GCTGATAGATTCATACATGAACA-ACATTGAGTCCACAATTTCAGCCAAGGAC-GAGCCT 1536
Query 1525 ACCAATGTTGTTGAGCAGTGGCAAGG-GTTAAAGAACCCCGCAAGCTTTTCG-ATCGAAG 1582
|||||||||||||| |||||| ||| ||||||||| || || ||||| || ||
Sbjct 1537 ACCAATGTTGTTGACCAGTGG-GAGGAGTTAAAGAA-GACG-AA---TTTCGCATTTAAA 1590
Query 1583 CCG-A-A--GA-AAGG---TTGAGTGAGGAG-GAGGA-GGATGATGGCGAGACTTCAGAG 1632
| | | | || | || | | | || ||||| || ||| || ||||||||||||
Sbjct 1591 CTGCATAGGGATATGGAACAAAACTTA--AGTGAGGATGG-TGAGGGAGAGACTTCAGAG 1647
Query 1633 AATGAGAT-TCTATGGAGGGAAATGGAACTATGCTTGGCTTCTTCTTACATTCTTGATGA 1691
|| || || | ||||||| ||||||||||| |||||||||||||||||||| || |||||
Sbjct 1648 AACGAAATGT-TATGGAGAGAAATGGAACTCTGCTTGGCTTCTTCTTACATACTCGATGA 1706
Query 1692 CCATGAGGTGAGAGTGGATAACGAGGCGTTCCATAAA-GCAACCTGTGATTGTGAACATG 1750
| | |||| |||||||| |||||||| || | ||| || | ||| ||||||||| |
Sbjct 1707 CAACGAGGCAAGAGTGGACAACGAGGCTTTAGA-AAAGGCGAGAAGTGGTTGTGAACACG 1765
Query 1751 ACTATGAA-TTGAATGAAGAAATCGGAATGTGTTGCAGATTGTGTGGTCATGTAGGAACT 1809
| ||| || || | ||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 1766 ATTAT-AAGCTGGACGAAGAAATCGGGATGTGTTGCAGGTTATGTGGTCATGTAGGAACT 1824
Query 1810 GAGATAAAACATGTTTCTGCACCTTTTGCGCG-GCACAAGAAATGGACGACGGAGACTAA 1868
||||||||| |||| |||||||| ||||| | || ||||||||||| | ||| |||||
Sbjct 1825 GAGATAAAAGATGTATCTGCACCATTTGC-AGAACATAAGAAATGGACAATGGACACTAA 1883
Query 1869 GCAAATC-AACGAAGATGACATTAATACTACTATAGTT-AACCA-AGATGGAGTTGAGAG 1925
||| || || |||||||||| ||| | |||| |||| | ||| | | | || ||||
Sbjct 1884 GCAGCTCGAA-GAAGATGACA-TAA-A-GACTA-AGTTGAGCCACA-AAGAAGGCGAGA- 1936
Query 1926 C--CATACTTTCACTAT-ACCAGTTGCTTCCTCAG-ATATGCCAT-CGGCTGAAGAAAGT 1980
| | | ||||||||| | || || ||| || | | ||| | | | ||||||||||||
Sbjct 1937 CTGAAGA-TTTCACTATGTCAAG-TGATTCTTC-GAAAATG-CTTGCCGCTGAAGAAAGT 1992
Query 1981 GACAATGTCTGGTCTTTAATACCTCAGCTTAAGAGAAAACTGCATTTGCACCAGA-AAAA 2039
|| || || ||| | |||||||||||||||||||||||||| ||| |||| || | ||
Sbjct 1993 GAAAACGTTTGGGCATTAATACCTCAGCTTAAGAGAAAACTACATATGCATCA-ACGAAG 2051
Query 2040 AGCTTTTGAGTTTCTCTGGAAG-AACCTAGCCGGGTCAGTGGTTCCCGCGATGATGGATC 2098
||||||||||||||||||| || || ||||| || || |||| ||| || | |||||||
Sbjct 2052 AGCTTTTGAGTTTCTCTGG-AGAAATCTAGCAGGATCTGTGGAACCCTCGCTTATGGATC 2110
Query 2099 CGAGTTCAGATAAGATAGGTGGGTGTGTAG-TTTCTCATACTCCCGGAGCAGGAAAAACA 2157
| | ||||||||| |||||||| ||||| | | |||||| |||| ||||| || |||||
Sbjct 2111 CCACTTCAGATAACATAGGTGGTTGTGT-GATCTCTCATTCTCCAGGAGCTGGTAAAAC- 2168
Query 2158 TTT-CTAATCATAGCTTTTCTCGCGAGCTACTTGAAGATATTT-CCGGGTAAAAGACCTT 2215
||| ||||| || ||||| ||| | |||||||||||| ||||| ||||| |||||||| |
Sbjct 2169 TTTCCTAATAATCGCTTTCCTCACTAGCTACTTGAAGCTATTTCCCGGG-AAAAGACCCT 2227
Query 2216 TGGTTCTTGCTCCAAAAACAACTTTGTACACTTGGTACAAGGAGTTCATCAAATGGGAGA 2275
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2228 TGGTTCTTGCTCCTAAAACAACTTTGTACACATGGTACAAGGAGTTCATCAAATGGGAGA 2287
Query 2276 TTCCGGTCCCTGTTCACTTGCTCCATGGTCGTAGAACCTACTGTATGTCCAAAG-AGAAG 2334
| || || || ||||| ||| |||| ||||| ||||||||||||| | ||| | ||||
Sbjct 2288 TCCCAGTTCCGGTTCATTTGATCCACGGTCGAAGAACCTACTGTACCTTCAA-GCAGAAC 2346
Query 2335 A-C-CA-TTCAGTTCGAGGGAATTCCAAAACCAAGCCAAGATGTTATGCATGTTCTTGAC 2391
| | || |||||||| | ||| |||| ||||| ||||||||||||||||||||||||||
Sbjct 2347 AGCACAATTCAGTTCAATGGAGTTCCGAAACCGAGCCAAGATGTTATGCATGTTCTTGAT 2406
Query 2392 TGTTTAGACAAA-ATCCAGAAATGGCATGCACAGCCGAGTGTTCTTGTAATGGGTTACAC 2450
|| ||||| ||| || ||||||||||| || || ||||||||||||||||||||||||||
Sbjct 2407 TGCTTAGA-AAAGATACAGAAATGGCACGCGCATCCGAGTGTTCTTGTAATGGGTTACAC 2465
Query 2451 ATCGTTTCTAACTTTGATGAGGGAAGATTCAAAGTTTGCTCATAGAAAGTACATGGCTAA 2510
|||||||| ||||||||||||||||| || ||||||||| || ||||||||||||||||
Sbjct 2466 CTCGTTTCTGACTTTGATGAGGGAAGACTCGAAGTTTGCTTATCGAAAGTACATGGCTAA 2525
Query 2511 AGTACTGAGAGAGTCTCCTGGA-TTACTGGTTCTAGACGAGGGACATAACCCGAGGAGTA 2569
||| || |||||| |||||| || || ||||| || || ||||||||||| |||||||
Sbjct 2526 AGTGCTAAGAGAGAGTCCTGGGCTT-CTTGTTCTTGATGAAGGACATAACCCAAGGAGTA 2584
Query 2570 CCAAGTCGAGATTACGAAAGGCCTTGATGAAAGTTGATACTGACTTGAGGATTCTGCTTT 2629
|||||||| ||||||| ||||||||||||||||||| ||||||||| ||||| || ||||
Sbjct 2585 CCAAGTCGCGATTACGCAAGGCCTTGATGAAAGTTGGTACTGACTTAAGGATACTTCTTT 2644
Query 2630 CTGGTACATTGTTTCAGAACAACTTCTGTGAGTACTTCAACACTTTGTGCTTGGCTAGAC 2689
| ||||| |||||||||||||||||||| |||||||||||||| |||| ||||||||||
Sbjct 2645 CGGGTACTTTGTTTCAGAACAACTTCTGCGAGTACTTCAACACGCTGTGTTTGGCTAGAC 2704
Query 2690 CCAAGTTTGTTCATGAGGTTCTAGTGGAGTTGGA-CAAGAAGTTCCAGACCAACCAAGCC 2748
| |||||| |||||||||||||| ||||||| || || ||| ||| ||||||| |||
Sbjct 2705 CAAAGTTTATTCATGAGGTTCTAATGGAGTTAGATCA-GAAATTCAAGACCAATCAAA-- 2761
Query 2749 GAGCAAA-A-GGCGCCTCACTTGCTTGAAAATAGAGCTCGGAAGTTCTTCCTTGACATTA 2806
| | ||| | ||||||||||||||| || ||||||||||| || |||||| | || || |
Sbjct 2762 GTGTAAATAAGGCGCCTCACTTGCTCGAGAATAGAGCTCGTAAATTCTTCATCGATATAA 2821
Query 2807 TAGCCAAGAAGATTGACACAAAAGTGGGCGATGAGCGC-TTGCAGGGTCTCAACATGTTG 2865
| |||||||||||||| || ||||| ||||| ||| || || |||||||| ||||||
Sbjct 2822 TTGCCAAGAAGATTGATGCAGGCGTGGGAGATGAACGCCTT-CAAGGTCTCAATATGTTG 2880
Query 2866 AGGAATATGACGAGTGGTTTCATCGATAACTATGAAGGGAGTGGAAGCGGAAGTGGTGAT 2925
| ||| ||||| | | ||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 2881 AAGAACATGACTAATAGTTTCATTGATAACTATGAAGGGAGTGGAAGTGGAAGTGGCGAT 2940
Query 2926 GTTCT-CCCAGGTTTGCAGATTTACACATT-GTTGATGAATTCCACTGATGTACAGCACA 2983
| ||| ||| ||| | || || || ||| | || |||||| || || ||| ||||||| |
Sbjct 2941 GCTCTTCCC-GGTCTACAAATCTATACACTAGT-GATGAACTCGACGGATATACAGCATA 2998
Query 2984 AGAGT-CTTACCAAACTTCAGAACATAATGTCA-ACTTACCAT-GGATATCCACTCGAGC 3040
||| | || || ||||||||| | |||| | ||||| | || ||||||||||||
Sbjct 2999 AGA-TACTCACAAAACTTCAGGATGTAATAA-AGACTTATT-TCGGGTATCCACTCGAGG 3055
Query 3041 TCGAG-TTACTCATAACGTTAGCTGCTATCCATCCTTGGTTGGTCAAAACCACAACCTGT 3099
||||| || | ||||| || || ||||| |||||||||||||||| | | ||| ||||
Sbjct 3056 TCGAGCTT-CAGATAACATTGGCAGCTATACATCCTTGGTTGGTCACGAGCTCAAACTGT 3114
Query 3100 TGCGCCAAATTCTTCAACCCTCAGGAGCTTTTAGAGATTGAGAAGCTCAAGCACGATGCA 3159
||| |||||||||||||| || || ||||||||||| || || |||||||||||||||
Sbjct 3115 TGCAAAAAATTCTTCAACCCGCAAGAACTTTTAGAGATCGAAAAACTCAAGCACGATGCA 3174
Query 3160 AAGAAAGGATCAAAAGTCATGTTTGTGCTTAATCTTGTGTTCCGGGTGGTCAAGAGGGAG 3219
||||||||||| ||||||||||||||||| || ||||| | ||| |||||||||||||||
Sbjct 3175 AAGAAAGGATCTAAAGTCATGTTTGTGCTAAACCTTGTCTACCGAGTGGTCAAGAGGGAG 3234
Query 3220 AAAATCCTCATATTTTGTCACAACATTGCGCCGATCCGCCTGTTT-CTTGAGCTGTTCGA 3278
|| ||| | || ||||| |||||||||||||| ||||| ||||| | || ||||| ||
Sbjct 3235 AAGATCTTGATCTTTTGCCACAACATTGCGCCAATCCGTATGTTTACC-GAACTGTTTGA 3293
Query 3279 GAATGTATTCAGGTGG-AAGAGAGGCCGAGAGCTCCTGACCTTGACAGGGGATCTCGAGC 3337
|||||| ||||||||| || |||||| ||||| || ||||||| || || ||||| || |
Sbjct 3294 GAATGTTTTCAGGTGGCAA-AGAGGCAGAGAGATCTTGACCTTAACCGGTGATCTTGAAC 3352
Query 3338 TGTTTGAAAGAGGCAGAGTAATAGACAAATTTGAAGAGCCAGGAGGCC-AGTCCCGTGTT 3396
|||| || ||||||||||| ||||||||||||||||| || ||| || | ||||| ||
Sbjct 3353 TGTTCGAGAGAGGCAGAGTGATAGACAAATTTGAAGAACCTGGAAACCCA-TCCCGAGT- 3410
Query 3397 CTG-CTGGCTTCGATTACAGCCTGTGCAGAAGGCATCAGTCTAACCGCTGCTTCACGGGT 3455
|| ||||| || || ||||| || |||||||| || |||||||||||||||||||||||
Sbjct 3411 CTTACTGGCCTCAATCACAGCTTGCGCAGAAGGGATTAGTCTAACCGCTGCTTCACGGGT 3470
Query 3456 GATCATGCTTGATTCAGAGTGGAATCCTTCTAAGACAAAGCAAGCAATCGCACGTGCATT 3515
|||||||| || || || ||||| ||||| |||||||||||||| || || ||||||||
Sbjct 3471 CATCATGCTCGACTCGGAATGGAACCCTTCAAAGACAAAGCAAGCCATAGCTCGTGCATT 3530
Query 3516 CAGACCGGGACAGCAGAAAGTGGTGTACGTTTACCAGCTCTTGTCGAGAGGAACACTT-G 3574
||||||||||||||||||||| || || ||||| ||||||||||| ||||||||| || |
Sbjct 3531 CAGACCGGGACAGCAGAAAGTTGTTTATGTTTATCAGCTCTTGTCCAGAGGAACA-TTAG 3589
Query 3575 AAGAAGACAAATACAGGAGGACGACCTGGAAAGAATGGGTCTCCAGTATGATTTTCAGTG 3634
| ||||| || ||||||||||| || |||||||| |||||||| |||||||| |||||||
Sbjct 3590 AGGAAGATAAGTACAGGAGGACAACATGGAAAGAGTGGGTCTCGAGTATGATATTCAGTG 3649
Query 3635 AAGAATTTGTGGAGGACCCATCTCAATGGCAAGCTGAGAAGATTGAGGACGATGTTCTTA 3694
| || ||||| | ||| ||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 3650 AGGAGTTTGTTGCGGATCCATCTCTATGGCAAGCTGAGAAGATTGAAGACGATGTTCTTA 3709
Query 3695 GAGAAATCGT-GGAGGAAGACAAAGTCAAATCCTTCCATATGATCATGAAGAACGAGAAA 3753
|||| ||||| |||| |||| ||||| ||||| |||||||||||||||||||| |||||
Sbjct 3710 GAGAGATCGTTGGAG-AAGATAAAGTTAAATCTTTCCATATGATCATGAAGAATGAGAAG 3768
Query 3754 GCTTCAACAGG 3764
|||||||||||
Sbjct 3769 GCTTCAACAGG 3779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 146597771196
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5