BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G42724.1

Length=1247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg897043 jgi|Araly1|897043|Al_scaffold_0005_1009                    250    2e-65
  Ahg897044 jgi|Araly1|897044|Al_scaffold_0005_1010                    209    3e-53


> Ahg897043 jgi|Araly1|897043|Al_scaffold_0005_1009
Length=468

 Score =  250 bits (135),  Expect = 2e-65
 Identities = 189/214 (88%), Gaps = 8/214 (4%)
 Strand=Plus/Plus

Query  347  TTGTCGACCTCCACTACTCTGATTATACTCTG-C-C-GGGGTCTCTGCATTGTAATTTGG  403
            |||| |||||| |||||||||||||| ||| | | |    |||||| |||||||||||||
Sbjct  257  TTGTGGACCTCTACTACTCTGATTATGCTCGGCCTCATCAGTCTCTACATTGTAATTTGG  316

Query  404  ATTCACTTGCCAAAGTTACACTGGACATTACTTTCGCaaaaaaaTCAAATGGGCTGCTGG  463
            ||| ||||||||||| |||||| ||| |||||||||||||||||||| || ||  |||||
Sbjct  317  ATTTACTTGCCAAAGCTACACTTGACCTTACTTTCGCAAAAAAATCAGAT-GG--GCTGG  373

Query  464  TTTACGGGGATGT--GGAATCTCATCAGCGGGATACGCAACGTCAAGACCCTGCACCTGA  521
            |||||| ||||||  || ||| |||||||||||||||||||||||||||||||||| |||
Sbjct  374  TTTACGAGGATGTGAGGGATCGCATCAGCGGGATACGCAACGTCAAGACCCTGCACTTGA  433

Query  522  CTTCTTCTGCTGTCGAGGTCAGTTTTAGTGTATG  555
            ||||||||||||||||||||||||||||||||||
Sbjct  434  CTTCTTCTGCTGTCGAGGTCAGTTTTAGTGTATG  467


> Ahg897044 jgi|Araly1|897044|Al_scaffold_0005_1010
Length=276

 Score =  209 bits (113),  Expect = 3e-53
 Identities = 137/149 (92%), Gaps = 0/149 (0%)
 Strand=Plus/Plus

Query  1014  ATGGATGACCCCCAAAAGGTGCAACTCACAAAGGATCTATTGGAACTTGCCACCGCTTCA  1073
             |||||||||||  ||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct  1     ATGGATGACCCAAAAAAGGTGCAACTCACAAAGGATCTGTTGGAGCTTGCCACCGCTTCA  60

Query  1074  CCCAAGCTCAAGATATTGAAGAATCTGTTGAAGCTTGCCACCGCTTCACCCAAGCTCAAG  1133
             ||||||||||||||||||||| ||||||||||||||||||| ||| |||| ||| |||||
Sbjct  61    CCCAAGCTCAAGATATTGAAGGATCTGTTGAAGCTTGCCACGGCTACACCGAAGATCAAG  120

Query  1134  ATATTGAAGAACCTGTTGAAGCTTGCCAC  1162
             ||| ||||| | |||||||||||||||||
Sbjct  121   ATAATGAAGGATCTGTTGAAGCTTGCCAC  149


 Score =  119 bits (64),  Expect = 6e-26
 Identities = 87/98 (89%), Gaps = 2/98 (2%)
 Strand=Plus/Plus

Query  1092  AAGAATCTGTTGAAGCTTGCCACCGCTTCACCCAAGCTCAAGATATTGAAGAACCTGTTG  1151
             ||| |||||||| |||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct  31    AAGGATCTGTTGGAGCTTGCCACCGCTTCACCCAAGCTCAAGATATTGAAGGATCTGTTG  90

Query  1152  AAGCTTGCCACCACCT-CACCCAAGGTCAAGATATTGA  1188
             |||||||||||  | | |||| ||| |||||||| |||
Sbjct  91    AAGCTTGCCACGGC-TACACCGAAGATCAAGATAATGA  127



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 46586204574


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5