BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G42725.1
Length=808
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484768 jgi|Araly1|484768|fgenesh2_kg.5__760__AT3G42725.1 846 0.0
> Ahg484768 jgi|Araly1|484768|fgenesh2_kg.5__760__AT3G42725.1
Length=617
Score = 846 bits (458), Expect = 0.0
Identities = 567/620 (91%), Gaps = 5/620 (1%)
Strand=Plus/Plus
Query 9 AAAACATCAATGGCTTCTTTTCACAGAAAGTTATGTTTGTTCCAAAACATTCTCGTATCG 68
|||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1 AAAA-ATCAATGGCTTCTTTTCACAGATTGTTATGTTTGTTCCAAAACATTCTTGTATCG 59
Query 69 TGTCTGAATTTCACTCTCCTCCTCCTCTCCCTCTGTTCTTTCGTACCAATCATTCTTCTT 128
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TGTCTGAATTTCACACTCCTCCTCCTCTCCCTCTGTTCTTTCGTACCAATCATTCTTCTT 119
Query 129 AGAAACCCTCCAACTTCACTCGGTTTAGCCTTCCTCGCAGTCTCACTCGTCTCTCTGATC 188
|||||||||||||||||||| |||||||||||| |||| ||||| ||||| |||||||||
Sbjct 120 AGAAACCCTCCAACTTCACTTGGTTTAGCCTTCATCGCGGTCTCTCTCGTATCTCTGATC 179
Query 189 TCCTCTTTCGGTAGTGCCTCTTCGCACCAATCTCGATCATGTTTCATCGCGCGGATAACG 248
|||||||| ||| ||||||||||||||||||||||| | |||||||| | || || ||
Sbjct 180 TCCTCTTTTGGTGGTGCCTCTTCGCACCAATCTCGAGCCTGTTTCATTGTTCGAATCACC 239
Query 249 CTTCATGTTTCCTCACTGACGGGTCAGTTTATTGCAGTTTTAATGTTGTTTAGTAGAGAG 308
||||||||||||||| |||||||||| | || |||||||||||||||||||||||||||
Sbjct 240 CTTCATGTTTCCTCATTGACGGGTCAACTAATGGCAGTTTTAATGTTGTTTAGTAGAGAG 299
Query 309 AAACAGAGTCTTTCTTTGCTGATATCGACTCGAGACCCTAGAGAGGCTAAAGCTTTGGTT 368
|||||||||||| |||||||||||||| |||||||||| ||||||||||||||||| |||
Sbjct 300 AAACAGAGTCTTGCTTTGCTGATATCGCCTCGAGACCCAAGAGAGGCTAAAGCTTTAGTT 359
Query 369 AG-AGTAGAATGTGGTGTTTTCGTGGCGATGATTCCGTTACAGATAATGGTTCTAGTGCT 427
|| | ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 360 AGGA-TAGAATGTGGTGTTTTCATGGCGATGATTCCGTTACAGATGATGGTTCTAGTGCT 418
Query 428 GGCTTGTTTGTTACATTGTTATTGGGTTAGAGAGTTCGAAGGGTTAGATGTTGAGAGTGA 487
||||||| |||| |||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 419 GGCTTGTGTGTTGCATTGTTATTGGGTTAGAGAGTTCCAAGGGTTAGAAGTTGAGAGTGA 478
Query 488 AGATTCTTTTAGAAGAAAATGTAACCGAAGAGTCTCGACCGCTGAAGATGGGACTAGTTC 547
||||||||||||||||||||||||||||||| ||||||||| |||||| | ||| ||||
Sbjct 479 AGATTCTTTTAGAAGAAAATGTAACCGAAGATTCTCGACCGTTGAAGAAGCTACTGGTTC 538
Query 548 GGATTT-AAAGAAAATGGAGTTGGACGAGAAGATGAATGTGAAACATGTTCAGTGGGTTA 606
|||| | ||||||| |||| ||||| ||||| | ||||| |||||||||||||||||| |
Sbjct 539 GGATGTCAAAGAAA-TGGAATTGGAAGAGAAAACGAATGCGAAACATGTTCAGTGGGTCA 597
Query 607 AAACAGATTTCGAAGGTTAA 626
|||||||||| |||||||||
Sbjct 598 AAACAGATTTTGAAGGTTAA 617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29850244011
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5