BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G42770.1
Length=1599
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897047 jgi|Araly1|897047|Al_scaffold_0005_1013 309 4e-83
Ahg937029 jgi|Araly1|937029|scaffold_501220.1 305 5e-82
Ahg347486 jgi|Araly1|347486|fgenesh1_pg.C_scaffold_5000878 230 3e-59
Ahg936896 jgi|Araly1|936896|scaffold_501087.1 206 5e-52
Ahg897043 jgi|Araly1|897043|Al_scaffold_0005_1009 171 2e-41
> Ahg897047 jgi|Araly1|897047|Al_scaffold_0005_1013
Length=867
Score = 309 bits (167), Expect = 4e-83
Identities = 468/604 (77%), Gaps = 57/604 (9%)
Strand=Plus/Plus
Query 310 TGGATATGTAATGCCCTTG-AACACGGTGTCTCTGAGCTTCATCTAAG-GATAGACTATA 367
|||||||||| | | | || ||| || ||||||||||||||||| || ||||| | ||
Sbjct 106 TGGATATGTAGTTCTC-TGAAACGTGGCGTCTCTGAGCTTCATCT-AGCCATAGAATCTA 163
Query 368 CGAAGCGGTGT-CATCTCCCATCCGAAA-TCTTCACCAGCACGAA-ATTGGTTAAGCTGT 424
| || || | | | |||||||| ||| ||||||||||||| || | | ||||||||||
Sbjct 164 TGTGGCTGTTTGC-TATCCCATCC-AAAGTCTTCACCAGCAC-AACACTCGTTAAGCTGT 220
Query 425 CATTGGTAACACAAAGTTGCTTCCCAG-TTGTACCTAAT-TG-TATATCTCTCCCATCAC 481
|||||| ||||| |||||| |||| ||| ||| | | || || ||| ||| |||
Sbjct 221 CATTGGGAACACGTTTTTGCTT-CCAGAGTGTTCCT--TCGGATACATATCTTCCAGCAC 277
Query 482 TAAAGGTTCTCTTCCTTGATTCAATTTGGTTTGAAGTTCCTCAATTC-TTAA--TATTTC 538
|||||||||||||||||||||||||||||||||| ||| ||||||| ||| | ||||
Sbjct 278 TAAAGGTTCTCTTCCTTGATTCAATTTGGTTTGACTTTCATCAATTCGCTAATGTGTTTC 337
Query 539 TCACTGCTTGCCCTGC-ACTTGAAGA-CTTAACCAT--ATATCAAAAGCCTCATTC-TGT 593
|| || |||||||| | |||||| || ||| | ||| ||||| ||| ||||||| |
Sbjct 338 TCCCTCCTTGCCCT-CTACTTGAGGACCTTGA-CATACATATC--AAGTCTCATTCAAG- 392
Query 594 AGGAATGCCATACCA-TATATCTAGCAAAACCATTAAGAGACTCTCTGTT-ACCTATA-C 650
||||| |||| || |||||| |||||||||||||||||||||| | || ||||||| |
Sbjct 393 AGGAAAGCCA-GTCATTATATCCAGCAAAACCATTAAGAGACTCT-TATTTACCTATAAC 450
Query 651 -ATGTGGTTATTTTGTTGATTATGGCCTTAAATTATTTAACACACCGAGTGTTGTCGACC 709
||| | ||||| || ||||| || | ||| | |||||| | |||||||||||
Sbjct 451 CATG-G-TTATTATGAC-ATTAT----TTCACTTA---A-CACACCAAATGTTGTCGACC 499
Query 710 TCTACTACTCT-GATTATGTTCGACATAAGTATCCACATATG-AATTTGGATTCACTTC- 766
||||||||| | | ||||| | | ||| ||| || ||| || ||| ||| |||||||
Sbjct 500 TCTACTACTGTAG-TTATGCTAGGCATGAGTCTCTTCAT-TGTAATCTGGGTTCACTTGT 557
Query 767 CTAAAGCTACACTGGACATTCATTTCTTAGA---TGATAATGCCGCTAACGTGACAGAG- 822
| ||||||||||| ||| |||| ||||||| |||| | | ||| | ||||| ||
Sbjct 558 C-AAAGCTACACTAGACCTTCAAATCTTAGAACATGATGAGGACGCGGATGTGAC-GAAT 615
Query 823 CTCCTCAGTGGGATACGCAACGTCAAGACCCTTCACTTGACTTCTTCCACTGTTAAGGTG 882
||||||||||||||| |||| |||||||||||||||||||||||||| |||| ||||||
Sbjct 616 CTCCTCAGTGGGATAAGCAATGTCAAGACCCTTCACTTGACTTCTTCTGCTGTCAAGGTG 675
Query 883 ATTT 886
||||
Sbjct 676 ATTT 679
Score = 191 bits (103), Expect = 2e-47
Identities = 138/154 (90%), Gaps = 6/154 (4%)
Strand=Plus/Plus
Query 1275 TGTTCCTTCGGATACATATCTTCCAGCACTTAAGGTTCTCTTCCTTGACTCAGTGTGGTT 1334
|||||||||||||||||||||||||||||| ||||||||||||||||| ||| | |||||
Sbjct 249 TGTTCCTTCGGATACATATCTTCCAGCACTAAAGGTTCTCTTCCTTGATTCAATTTGGTT 308
Query 1335 TGACTTTCATCAATTCGCTAATGtttttttCCCTGCTTGTCCTGC-ACTTGAGGACTTTG 1393
|||||||||||||||||||||||| ||| ||||| |||| ||| | |||||||||| |||
Sbjct 309 TGACTTTCATCAATTCGCTAATGTGTTTCTCCCTCCTTGCCCT-CTACTTGAGGACCTTG 367
Query 1394 -CAATACATATCAAGTC--ATTCAGGAGGAAAGC 1424
|| ||||||||||||| ||||| |||||||||
Sbjct 368 ACA-TACATATCAAGTCTCATTCAAGAGGAAAGC 400
> Ahg937029 jgi|Araly1|937029|scaffold_501220.1
Length=1243
Score = 305 bits (165), Expect = 5e-82
Identities = 703/944 (74%), Gaps = 111/944 (12%)
Strand=Plus/Plus
Query 1 ATGAATTGTCTTCCAGATGAGCTTCTTGTTCAAATCTTATCCTTCCTTCCCACTAAAGAA 60
|||||||||||||||||||| |||||||| |||||||| ||||| ||| | || ||||||
Sbjct 45 ATGAATTGTCTTCCAGATGATCTTCTTGTCCAAATCTTGTCCTTTCTTACTACGAAAGAA 104
Query 61 GCTACTTCAACCTCTCTTCTCTCCAAGAGGTGGAGGACTCTATTTACTCTCAGTCCTAAT 120
||| |||| |||| | || | |||||||| ||||||||||| ||| ||||| ||| ||||
Sbjct 105 GCTGCTTCGACCTTTGTTTTGTCCAAGAGATGGAGGACTCTGTTTGCTCTCCGTCATAAT 164
Query 121 CTTGACTTTGACAAC-TCCCTCCTTTT-G-CAATCCAA-A-AAGCGTAAATGGAATATG- 174
||||||||||||||| | |||||| | || | || | || |||| | || |
Sbjct 165 CTTGACTTTGACAACAT-GAACCTTTTGGACACT-GAAGATTTGCTTAAACATAGTA-GA 221
Query 175 CGCAATATTCAAAAGAGTTTCGTTGGTTTCGTGGAT-AGTACATTGGCTTTACAAGGCGG 233
||| | ||| ||||||||||| || ||| |||||| | |||||||||||| || |||
Sbjct 222 CGCCACATTAAAAAGAGTTTCAATGATTTTGTGGATCA-TACATTGGCTTTGCATGGCAA 280
Query 234 TAAGGGTATAAA-ATCGTTCTCA-TTAAAATTTAAAGAAACACTTGGAGATGTA-AATGG 290
||| |||||| | ||||||| || || ||| || || | | | || | |||
Sbjct 281 TAACACTATAAAGA-AGTTCTCACTT-GAACTTAGTGATACTCAT--A-TTG-ATAAT-C 333
Query 291 TGAAGTTGATGTTAACCGATGGATATGTAATGCCCTTGAACACGGTGTCTCTGAGCTTCA 350
| | ||| ||| |||| ||||||||||||||||| |||| |||||||||||| |||||
Sbjct 334 T--ACATGACGTTGACCGCTGGATATGTAATGCCCTGGAACGCGGTGTCTCTGACCTTCA 391
Query 351 TCTAAGG-ATAG-A-CT--A-TA-CGAAGCGGTGT-CATCTCCCATCCGAAA-TCTTCAC 401
| | ||| |||| | || | || | ||| | || |||||||| ||| |||||||
Sbjct 392 T-TTAGGCATAGAATCTGAATTATTTTTGTGGTCTGGAT-TCCCATCC-AAAGTCTTCAC 448
Query 402 CAGCACGAA-ATTGGTTAAGCTGTCA-T-----TGGTAACACA-AAGTTGCTTCC--CAG 451
|||||| || | |||||||||||||| | ||| |||| | | || | || ||
Sbjct 449 CAGCAC-AACACTGGTTAAGCTGTCACTGGGAGTGGGAACA-AGATTTTAC-ACCGAAAG 505
Query 452 TTGTACC-T-A-ATTGTATATCTCTCCCATCACTAAAGGTTCTCTTCCTTGATTCAATT- 507
||| || | | | | | ||||||| ||| |||||||||||||||||||||||||||||
Sbjct 506 -TGTTCCTTCAGA-T-T-TATCTCTTCCAGCACTAAAGGTTCTCTTCCTTGATTCAATTA 561
Query 508 T--GGTTTGAAG--T--TCCT-CAATTCTTAA-TAT-TT-CTCACTGCTTGCCCTGCACT 557
| ||||| ||| | || | ||||| |||| | | || ||| ||||||||||||||||
Sbjct 562 TTTGGTTT-AAGGGTGATC-TACAATTATTAAATGTGTTTCTCGCTGCTTGCCCTGCACT 619
Query 558 TGAAGACTTAACCATATATCAAAAGCCTC-ATTCTGTAGGAATGCCAT-ACCAT-ATATC 614
|| |||||||||||| || | | | | || ||| | || || | || | |||||
Sbjct 620 CGAGGACTTAACCATACATTATATGTGTGGAT-CTGAA--AAC-CC-TCACG-TCATATC 673
Query 615 TAGCAAAACCATTAAGAGACTCTCTGTT-ACCTAT----ACATGTG-G-TTATTTTG-TT 666
|||||||||||||||| |||||| ||| |||||| | || | | ||||| || ||
Sbjct 674 CAGCAAAACCATTAAGAAACTCTC-GTTTACCTATGGTTATATCTATGATTATTATGGTT 732
Query 667 GATTATGGCCTTA-AATTATTT-A----ACACACCGAGTGTTGTCGACCTCTACTACTCT 720
||| | | | | |||||||| | ||||||||| |||||||||| ||||||||||
Sbjct 733 -ATTTTT-C-T-AGAATTATTTCATTTGACACACCGAATGTTGTCGACTTCTACTACTCA 788
Query 721 GATTATGTTCG-ACAT-AAGTATCCACATATGA-A-TTTGGATTCACTT-CCTAAAGCTA 775
|||||| || | | | || | ||| || | | | |||| ||||| || || |||||||
Sbjct 789 GATTATTTTGGGAG-TGAA-TCTCCGCA-ACGTCACTTTG-ATTCAATTGCC-AAAGCTA 843
Query 776 CACTGGACATTCATTTCTTAGA---TGATAATGCC-GCTAACGTGACAGAGCTCCTCAGT 831
|| ||||| ||||||||||| | ||| || | || | |||||||| ||| |||||
Sbjct 844 CATTGGACCTTCATTTCTTAAAAGGTGACAA-GATTGCGGATGTGACAGATCTCATCAGT 902
Query 832 GGGATACGCAACGTCAAGACCCTTCACTTGACTTCTTCCACTGT 875
||||||||||| || |||||||| ||||||| |||||| |||||
Sbjct 903 GGGATACGCAATGTTAAGACCCTCCACTTGAATTCTTCTACTGT 946
> Ahg347486 jgi|Araly1|347486|fgenesh1_pg.C_scaffold_5000878
Length=948
Score = 230 bits (124), Expect = 3e-59
Identities = 274/343 (80%), Gaps = 23/343 (7%)
Strand=Plus/Plus
Query 468 ATCTCTCCCATCACTAAAGGTTCTCTTCCTTGATTCAATTTGGTTTGA-AGTTCCTCAAT 526
|||||||||| |||||||||||||| ||||||||||||| | |||| | || | |||||
Sbjct 150 ATCTCTCCCAGCACTAAAGGTTCTCCTCCTTGATTCAATCT-GTTTTACAGATAATCAAT 208
Query 527 TCTT-AA--TATTTCTCACTGCTTGCCCTGCACTTGAAGACTTAACCATATATCAAAAGC 583
| || || |||||||||||||||||||||||||||| |||||||| ||| |||| ||
Sbjct 209 TGTTAAATGTATTTCTCACTGCTTGCCCTGCACTTGAGGACTTAACGATACATCACGAGA 268
Query 584 CTCATTCTGTAGGAATGCCATACCAT-ATATCTAGCAAAACCATTAAGAGACTCTCTGTT 642
|| ||| ||| |||| | | ||||||||||||||||| || | ||||||||||
Sbjct 269 AAAATGAAGTA-CAAT--CATA-CGTCATATCTAGCAAAACCATCAAAAAACTCTCTGTT 324
Query 643 ACCTA-TACATGTGGTTATTTTGTTGATTAT---GGCCTTAAATTATTTAACACACCGAG 698
||| | || || | | ||| | |||||| | | | ||| || | || ||||||| ||
Sbjct 325 ACC-ATTAAATTTAATAATTATCTTGATTCTCCCGTCATTATATCAATTGACACACCTAG 383
Query 699 TGTTGTCGACCTCTACTACTCTGATTAT-GTTCGACATAAGTATCCACATATG--AATTT 755
|||||||||||||||||||||||||||| || || ||||| | ||||| | || ||||
Sbjct 384 TGTTGTCGACCTCTACTACTCTGATTATCGT-CGGCATAAATCTCCACGT-TGTCAATT- 440
Query 756 GGATTCACTT-CCTAAAGCTACACTGGACATTCATTTCTTAGA 797
|||||||||| || ||||||||| ||||| |||||||||||||
Sbjct 441 GGATTCACTTGCC-AAAGCTACATTGGACCTTCATTTCTTAGA 482
> Ahg936896 jgi|Araly1|936896|scaffold_501087.1
Length=804
Score = 206 bits (111), Expect = 5e-52
Identities = 349/457 (76%), Gaps = 43/457 (9%)
Strand=Plus/Plus
Query 296 TTGATGTTAACCGATGGATATGTAATGCCCTTGAACACGGTGTCTCTGAGCTTCATCTAA 355
||| |||| | || ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 349 TTGTTGTTGATCGCTGGATATGTAAGGCCCTGGAACACGGTGTCTCTGAGCTTCATCTAC 408
Query 356 GGAT--AGACT--A-T-ACGAAG-CG-GT-GT-CATCTCCCATCCGAAATCTTCACCAGC 405
| || | | | | | | | || || || || ||||||||||| |||||||||||
Sbjct 409 GCATACAAAATGAATTGTTGTGGCCGTGTGGTGGAT-TCCCATCCGAAGTCTTCACCAGC 467
Query 406 ACGAA-ATTGGTTAAGCTGTCATTGGTAACACA-AAGTTGCTTCC-CAGTTGTACCTAAT 462
|| || | |||||||||||||||||| |||| | | | | ||| | | | ||| |
Sbjct 468 AC-AACACTGGTTAAGCTGTCATTGGGAACA-AGATCTCACATCCTTA-CTATTCCT--T 522
Query 463 -TG-TATATCTCTCCCATCACTAAAGGTTCTCTTCCTTGATTCAATTTGGTTTGAAGTTC 520
| || || ||| ||| |||||||||||||||||||||||||||| |||||| ||| |
Sbjct 523 GGGATACATATCTGCCAGCACTAAAGGTTCTCTTCCTTGATTCAATATGGTTT-AAGGAC 581
Query 521 -CTCAATTCTT-AA--TATTTCTCACTGCTTGCCCTGCACTTGAAGACTTAACCATATAT 576
| || | || || | |||||| |||||||||||||||||| |||||||||||| ||
Sbjct 582 GATAAACTATTGAATGTGTTTCTCGTTGCTTGCCCTGCACTTGAGGACTTAACCATACAT 641
Query 577 CAAAAGCCTCATTCTGTAGGAATGCCATACCAT-ATATCTAGCAAAACCATTAAGAGACT 635
|| || || | ||| || || | | | ||||| ||||||||||||||||||||
Sbjct 642 GAAGAG----ATG-TATAGAAAGGC-AGAGG-TCATATCAAGCAAAACCATTAAGAGACT 694
Query 636 CTCTGTTACCTATA-CA-T-GTGGTTATTT-TGTTGATTATGGCCTTAAATT-ATTTAAC 690
||| |||||||||| || | ||| ||||| | | |||| |||| ||| || | || ||
Sbjct 695 CTCAGTTACCTATAACACTAGTGAATATTTCTAT-GATTCTGGCATTAT-TTCACTTGAC 752
Query 691 ACACCGAGTGTTGTCGACCTCTACTACTCTGATTATG 727
|||||| ||| || ||||||||||||||||||||||
Sbjct 753 ACACCGTGTGATG--GACCTCTACTACTCTGATTATG 787
> Ahg897043 jgi|Araly1|897043|Al_scaffold_0005_1009
Length=468
Score = 171 bits (92), Expect = 2e-41
Identities = 169/203 (83%), Gaps = 17/203 (8%)
Strand=Plus/Plus
Query 380 ATCTCCCATCCGAAATCTTCACCAGCACGAAATTGGTTAAGCTGTCATTGGTAACACAA- 438
||||||||||| |||||||||||||||| ||| | |||||||||||||||| || | ||
Sbjct 17 ATCTCCCATCCAAAATCTTCACCAGCACAAAACTCGTTAAGCTGTCATTGGGAAGAGAAT 76
Query 439 AGTTGCTTC-CCAGTTGTACCTAATT-G-TATATCTCTCCCAT-CACTAAAGGTTCTCTT 494
| ||||||| | |||| | ||| || | |||||||||||| | ||||||||||||||||
Sbjct 77 A-TTGCTTCTCAAGTT-TTCCT--TTGGATATATCTCTCCC-TGCACTAAAGGTTCTCTT 131
Query 495 CCTTGATTCAATTTGGTTTGAAGTTCC-TCAA-T-TCTTAATAT-TT-CTCACTGCTTGC 549
|||||||||||| |||||| ||| | |||| | || ||| | || ||| ||||||||
Sbjct 132 CCTTGATTCAATCTGGTTT-AAGGACAATCAACTATCG-AATGTGTTTCTCGCTGCTTGC 189
Query 550 CCTGCACTTGAAGACTTAACCAT 572
||||||||||| |||||||||||
Sbjct 190 CCTGCACTTGAGGACTTAACCAT 212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59915955385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5