BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G42790.1
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484769 jgi|Araly1|484769|fgenesh2_kg.5__761__AT3G42790.1 1589 0.0
Ahg941601 jgi|Araly1|941601|scaffold_602145.1 512 2e-144
> Ahg484769 jgi|Araly1|484769|fgenesh2_kg.5__761__AT3G42790.1
Length=1017
Score = 1589 bits (860), Expect = 0.0
Identities = 980/1035 (95%), Gaps = 20/1035 (2%)
Strand=Plus/Plus
Query 34 TAGAAGAAAAACAAGATCGGGTCTCGTCACGGTCCACGGCGCAGCTTTTTCTTCGTCTTC 93
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 TAGAAGAAAAACAAGATCGGGTCTCGTCACGGTCCACGCCGCAGCTTTTTCTTCGTCTTC 60
Query 94 TTCAATTATTCTATTCCCTCTGAGAGATTCTCTCTGCGTTTCTTAGATCGAGCGAGCGAA 153
||| ||||||||||| ||||||||||||||||||| ||||| | || || || |
Sbjct 61 TTCCATTATTCTATT-TCTCTGAGAGATTCTCTCTGAGTTTC-----T-GA--GATCG-A 110
Query 154 GCGAGAGATCATGGAAGGTGGAGCTGCTCTCTACAATCCTCGAACTGTCGAAGAAGTTTT 213
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 111 GC--GAGATCATGGAAGGTGGAGCTGCTCTTTACAATCCTCGAACTGTCGAAGAAGTTTT 168
Query 214 CAAGGATTTCAAAGGTCGTCGTACTGCCATTGTCAAAGCTCTCACCACCGATGTTCAAGA 273
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 169 CAAGGATTTCAAAGGTCGTCGTGCTGCCATTGTCAAAGCTCTCACCACCGATGTTCAAGA 228
Query 274 GTTTTACCAACAATGTGACCCTGAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGA 333
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 229 GTTTTACCAACAATGTGACCCTGAAAAGGAGAATCTTTGTTTGTATGGGTTACCGAATGA 288
Query 334 AGAATGGGAAGTGAATTTACCAGCTGAAGAAGTGCCTCCTGAGTTACCAGAGCCAGCTCT 393
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 289 AGAATGGGAAGTGAATTTACCAGCTGAAGAAGTGCCTCCTGAGCTACCAGAGCCAGCTCT 348
Query 394 TGGTATTAACTTTGCTAGGGATGGGCTCTCTGAAAAGGAATGGCTTTCGCTTGTTGCTAT 453
||| || ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 349 TGGCATCAACTTTGCTAGAGATGGGCTCTCTGAAAAAGAATGGCTTTCTCTTGTTGCTAT 408
Query 454 TCACAGTGACGCTTGGTTACTGTCTGTCTCGTTTTACTTTGGCTCAAGGTTTTCTTTCCA 513
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 409 TCACAGTGATGCTTGGTTACTCTCTGTCTCGTTTTACTTTGGCTCAAGGTTTTCTTTCCA 468
Query 514 CAAGGAAGAGAGGAAGCGTTTGTTCAACATGATCAATGATGTTCCTACTATATTTGAAGT 573
|||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 469 CAAGGAGGAAAGGAAGCGCTTGTTCAACATGATCAATGATGTTCCTACTATATTTGAAGT 528
Query 574 AGTGACTGGAATGGCTAAAGCAAAGGACAAGTCATCTGCTGCAAATCAAAACGGAAACAA 633
||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 529 AGTGACTGGAATGGCCAAAGCGAAGGACAAGTCATCTGCTGCCAATCAAAACGGAAACAA 588
Query 634 ATCCAAGTCTAACTCTAAAGTTAGAACTTCAGAGGGAAAAAGCTCAAAGACCAAGCAGCC 693
||||||||| ||||| ||||||||||||||||| || |||||||||||||||| ||||||
Sbjct 589 ATCCAAGTCGAACTCAAAAGTTAGAACTTCAGAAGGCAAAAGCTCAAAGACCATGCAGCC 648
Query 694 AAAAGAGGAGGACGAAGAAATAGATGAAGATGATGAGGATGACCACGGGGAAACCCTTTG 753
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 649 AAAAGAGGAGGACGAAGGAATAGATGAAGATGATGAGGATGACCACGGCGAAACCCTTTG 708
Query 754 TGGAGCCTGTGGAGACAGTGATGGTGCTGATGAATTCTGGATCTGCTGTGACCTTTGTGA 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 TGGAGCCTGTGGAGACAGTGATGGTGCTGATGAATTCTGGATCTGCTGTGACCTTTGTGA 768
Query 814 GAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCAGCTAGAGCTGAGCATATCAAACA 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCAGCTAGAGCTGAGCATATCAAACA 828
Query 874 ATACAAGTGCCCTTCATGCAGCAACAAAAGAGCTCGAGCTTAAAAATGTTGTATTGTAGA 933
||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||
Sbjct 829 ATACAAGTGCCCTTCATGCAGCAACAAAAGAGCACGAGCTTAAA--TGTTCTATTGTAGT 886
Query 934 GAATAGCCTGTAGTGACAACTCTCACTACCCTCGATCTGTCTTTATTTGGCTAGTCTTTT 993
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 887 GAATAGCCTGTAGTGACAACTCTCACTACCCTC--T--GTCTTTATTTGGCTAGTCTT-- 940
Query 994 AGCTCGTTATTGGCCATAACAGCTTGGGCCTATTTCTCTGTATAATTGGTTTGATTTTGC 1053
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 AGCGCTTTATTGGCCATAACAGCTTGGGCCTATTTCTCTGTATAATTGGTTTGATTTTGC 1000
Query 1054 AACTGAGaaaaaaaa 1068
|||||||||||||||
Sbjct 1001 AACTGAGAAAAAAAA 1015
> Ahg941601 jgi|Araly1|941601|scaffold_602145.1
Length=825
Score = 512 bits (277), Expect = 2e-144
Identities = 624/786 (79%), Gaps = 46/786 (6%)
Strand=Plus/Plus
Query 163 CATGGAAGGTGGAGCTG-CTCTCTACAATCCTCGAACTGTCGAAGAAGT-TTTCAAGGAT 220
||||||||| ||||| | | | |||||| |||||||||||||||||||| || | | |||
Sbjct 21 CATGGAAGGAGGAGC-GTCGCACTACAACCCTCGAACTGTCGAAGAAGTCTTCCGA-GAT 78
Query 221 TTCAAAGGTCGTCGTA-CTGCCATTGTCAAAGCTCTCACCACCGATGTTCAAGAGTTTTA 279
||||| || ||||| | || ||| || ||||||||||||| ||||| |||| ||||
Sbjct 79 TTCAAGGGCCGTCG-AGATGGCATCATCCAAGCTCTCACCACTGATGTGGAAGA-TTTTT 136
Query 280 CCAA-CAATGTGACCCTGAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAAT 338
|| ||||| |||||||||||||||||||||||||||||||| || || ||||||| |
Sbjct 137 TAAAGCAATGCGACCCTGAGAAGGAGAATCTTTGCTTGTATGGATTCCCAAATGAAGTGT 196
Query 339 GGGAAGTGAATTTACCAGCTGAAGAAGTGCCTCCTGAG-TTACCAGAGCCAGCTCTTGGT 397
||||||| || ||||||||||||||||||||||||||| || || || || || || ||
Sbjct 197 GGGAAGTTAACTTACCAGCTGAAGAAGTGCCTCCTGAGCTTCCC-GAACCTGCACTCGGC 255
Query 398 ATTAACTTTGCTAGGGATGGGCTCTCTG-AAAAGGAATGGCTTTCGCTTGTTGCTATTCA 456
||||||||||| || |||||| | | | |||| || |||||||| || |||||| | ||
Sbjct 256 ATTAACTTTGCCAGAGATGGGATG-CAGGAAAAAGACTGGCTTTCTCTCGTTGCTGTCCA 314
Query 457 CAGTGACGCTTGGTTACTGTCTGTCTCGTTTTACTTTGGCTCAAGGTTTTCTTTCCACA- 515
|||||| || |||||||| ||||| || ||||||||||| ||||| || ||| | |
Sbjct 315 CAGTGATGCGTGGTTACTTTCTGTGTCCTTTTACTTTGGTTCAAGAATTGGTTTTGATAG 374
Query 516 AGGAAGAGAGGAAGCGTTTGTTCAACATGATCAATGATGTTCCTACTATATTTGAAGTAG 575
|| || |||||||| |||||||||||||| ||||| ||||||||| |||||||||| |
Sbjct 375 AGCT-GACAGGAAGCGCTTGTTCAACATGATAAATGAGGTTCCTACTGTATTTGAAGTTG 433
Query 576 TGACTGGAA-TG-GCT-AAAG---CAAAGGACAAGTCATCTGCTGCAAATCAAAACGGAA 629
| ||||||| || | ||| ||||||| ||| | ||| | ||||||||||| || |
Sbjct 434 TAACTGGAAATGAGAAGAAACAAACAAAGGAAAAGCCCTCTTCAGCAAATCAAAATGGCA 493
Query 630 ACAAATCCAAGTCTAACTCTAAAGTTAGAACTTCAGAGGGAAAAAGCTCAAAGACCA-A- 687
||| ||||||||| || || ||||| ||| || ||| || || || |||||||| | |
Sbjct 494 ACAGATCCAAGTCAAATTCAAAAGTGAGAGGTTTAGAAGGTAACAGTTCAAAGACGATAC 553
Query 688 -G-C-A-GC-CAA--AAGA-GGA---G-GAC-GA--A-G---AA-AT-A-GATGAAGATG 725
| | | | | | |||| ||| | || || | | || | | || ||||| |
Sbjct 554 AGGCTAAGGACGAGGAAGAAGGATTAGAGATAGAGGAAGGGGAAGAGGAAGAGGAAGAGG 613
Query 726 ATGAGGATGACCACGGGGAAACCCTTTGTGGAGCCTGTGGAGACAG-TGATGGTGCTGAT 784
|||| ||||| ||||| |||||||| |||||||| |||||||| | | ||| | |||||
Sbjct 614 ATGAAGATGAACACGGTGAAACCCTATGTGGAGCTTGTGGAGATAACT-ATGCTTCTGAT 672
Query 785 GAATTCTGGATCTGCTGTGACCTTTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATC 844
||||||||||| ||||||||| | || ||||| |||||||| || |||||||||||||||
Sbjct 673 GAATTCTGGATTTGCTGTGACATGTGCGAGAAATGGTTCCACGGGAAGTGTGTGAAGATC 732
Query 845 ACTCCAGCTAGAGCTGAGCATATCAAACAATACAAGTGCCCTTCATGCAGCAACAAAAGA 904
|||||||||||||||||||||||||| || || ||||||||||| |||||||||||||||
Sbjct 733 ACTCCAGCTAGAGCTGAGCATATCAAGCATTATAAGTGCCCTTCTTGCAGCAACAAAAGA 792
Query 905 GCTCGA 910
|| |||
Sbjct 793 GCACGA 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40448414937
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5